Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30696 * 125.64260 * 2 1 4 4 N 1.39904 * 109.52537 * 180.02562 * 3 2 1 5 5 C 1.36311 * 132.15992 * 180.02562 * 4 3 2 6 6 C 1.35760 * 119.15391 * 179.97438 * 5 4 3 7 7 C 1.39964 * 119.35398 * 0.02562 * 6 5 4 8 8 N 1.31498 * 120.10911 * 0.02562 * 7 6 5 9 9 C 1.33385 * 120.85259 * 359.64549 * 8 7 6 10 10 C 1.40646 * 125.63756 * 180.02562 * 2 1 3 11 11 C 1.46588 * 126.53435 * 359.97438 * 10 2 1 12 12 O 1.21720 * 119.99636 * 90.02792 * 11 10 2 13 13 N 1.34772 * 120.00346 * 270.02131 * 11 10 2 14 14 C 1.46498 * 120.00078 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47015 * 324.99960 * 14 13 11 16 16 C 1.53000 * 109.47046 * 205.00299 * 14 13 11 17 17 N 1.46504 * 109.47261 * 54.99916 * 16 14 13 18 18 C 1.36939 * 120.00041 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99997 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00361 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00247 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46891 * 90.00101 * 22 20 18 24 24 H 1.48497 * 109.47358 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47012 * 330.00534 * 22 20 18 26 26 C 1.52994 * 109.47321 * 84.99937 * 14 13 11 27 27 C 1.52997 * 109.47404 * 295.00158 * 26 14 13 28 28 C 1.53002 * 109.46817 * 294.99916 * 27 26 14 29 29 C 1.53000 * 109.47060 * 175.00005 * 27 26 14 30 30 H 1.09000 * 109.47321 * 269.98065 * 1 2 3 31 31 H 1.08999 * 109.46638 * 29.97810 * 1 2 3 32 32 H 1.08996 * 109.47037 * 149.97777 * 1 2 3 33 33 H 1.07996 * 120.42501 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.31624 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.94221 * 179.97438 * 7 6 5 36 36 H 0.96995 * 120.00034 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.47250 * 174.99730 * 16 14 13 38 38 H 1.09002 * 109.47443 * 294.99939 * 16 14 13 39 39 H 0.96993 * 119.99618 * 0.02562 * 17 16 14 40 40 H 0.96999 * 120.00488 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47017 * 174.99801 * 26 14 13 42 42 H 1.09008 * 109.46970 * 55.00109 * 26 14 13 43 43 H 1.09002 * 109.47153 * 54.99686 * 27 26 14 44 44 H 1.08996 * 109.47407 * 60.00219 * 28 27 26 45 45 H 1.09000 * 109.46986 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.47075 * 299.99262 * 28 27 26 47 47 H 1.09004 * 109.46724 * 180.02562 * 29 27 26 48 48 H 1.09001 * 109.47194 * 299.99650 * 29 27 26 49 49 H 1.08992 * 109.47399 * 59.99823 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2686 1.0621 0.0000 4 7 3.6127 0.6737 -0.0006 5 6 4.7721 1.3905 -0.0004 6 6 5.9581 0.7298 -0.0006 7 6 5.9637 -0.6699 -0.0016 8 7 4.8288 -1.3341 -0.0028 9 6 3.6601 -0.6914 0.0040 10 6 2.3265 -1.1431 -0.0005 11 6 1.8777 -2.5385 -0.0006 12 8 1.6915 -3.1178 -1.0548 13 7 1.6714 -3.1802 1.1665 14 6 1.2234 -4.5750 1.1663 15 1 0.5512 -4.7406 0.3243 16 6 0.4867 -4.8742 2.4734 17 7 -0.6026 -3.9108 2.6517 18 6 -1.4053 -3.9819 3.7589 19 1 -1.2355 -4.7485 4.5005 20 6 -2.4376 -3.0695 3.9275 21 7 -3.2088 -3.1375 4.9918 22 14 -2.7316 -1.7440 2.6443 23 1 -3.6788 -2.2496 1.6185 24 1 -3.3059 -0.5408 3.2982 25 1 -1.4437 -1.3881 1.9963 26 6 2.4356 -5.5000 1.0408 27 6 3.1000 -5.2881 -0.3210 28 6 2.1408 -5.7253 -1.4299 29 6 4.3817 -6.1201 -0.3980 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.7477 2.4702 0.0008 34 1 6.8881 1.2789 0.0000 35 1 6.9017 -1.2051 -0.0022 36 1 1.8195 -2.7185 2.0065 37 1 0.0766 -5.8835 2.4366 38 1 1.1822 -4.7948 3.3090 39 1 -0.7551 -3.2226 1.9854 40 1 -3.9300 -2.4996 5.1099 41 1 2.1120 -6.5370 1.1298 42 1 3.1494 -5.2729 1.8327 43 1 3.3435 -4.2331 -0.4463 44 1 1.2277 -5.1326 -1.3751 45 1 2.6139 -5.5739 -2.4002 46 1 1.8973 -6.7803 -1.3047 47 1 4.8553 -5.9688 -1.3681 48 1 5.0651 -5.8087 0.3920 49 1 4.1382 -7.1751 -0.2728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753740937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = 64.721952 kcal Electronic energy + Delta-G solvation = -31631.871323 eV Core-core repulsion = 27595.435327 eV Total energy + Delta-G solvation = -4036.435996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.52021 -41.00567 -39.27227 -37.92336 -36.52360 -35.29686 -34.94532 -33.28788 -33.18273 -31.37790 -30.21811 -29.35788 -27.92116 -27.30322 -25.55680 -25.20549 -24.18674 -22.81317 -21.97656 -21.18352 -20.74465 -19.83124 -19.28137 -18.47813 -18.08931 -17.48067 -17.05316 -16.83125 -16.57806 -16.32072 -15.78597 -15.27744 -15.16568 -14.99614 -14.77453 -14.66359 -14.49615 -14.44000 -14.14137 -14.04821 -13.73265 -13.50780 -13.43958 -13.40274 -13.09583 -12.98764 -12.85580 -12.53852 -12.44818 -12.35624 -12.13679 -11.94600 -11.79261 -11.63532 -11.35729 -11.21841 -11.02253 -10.90581 -10.81563 -10.52600 -9.90402 -9.29996 -9.07745 -8.01333 -5.34987 -0.52067 -0.22854 0.91033 1.18774 1.36779 1.41548 1.48247 1.59410 2.26415 2.41351 2.49504 2.74145 2.96661 3.30941 3.50185 3.52779 3.75495 3.88244 4.01518 4.04930 4.11476 4.14545 4.17953 4.33553 4.37799 4.43634 4.48753 4.54225 4.64151 4.66882 4.75013 4.83443 4.90129 4.91469 4.95741 5.00735 5.02580 5.11107 5.16527 5.19515 5.24652 5.42363 5.46592 5.61989 5.64197 5.70922 5.77142 6.21237 6.21388 6.54531 6.60811 7.08232 7.31653 7.83503 8.03135 9.19544 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008811 B = 0.004665 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.910942 B = 6000.609926 C = 8162.044090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.150 3.850 3 N -0.331 5.331 4 N -0.310 5.310 5 C 0.145 3.855 6 C -0.196 4.196 7 C 0.191 3.809 8 N -0.501 5.501 9 C 0.293 3.707 10 C -0.321 4.321 11 C 0.613 3.387 12 O -0.554 6.554 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.077 0.923 16 C 0.149 3.851 17 N -0.754 5.754 18 C -0.230 4.230 19 H 0.060 0.940 20 C -0.060 4.060 21 N -0.983 5.983 22 Si 0.941 3.059 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.236 1.236 26 C -0.113 4.113 27 C -0.091 4.091 28 C -0.132 4.132 29 C -0.136 4.136 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.215 0.785 34 H 0.226 0.774 35 H 0.225 0.775 36 H 0.402 0.598 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.365 0.635 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.580 8.066 -13.188 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 N -0.156 5.156 4 N -0.078 5.078 5 C 0.011 3.989 6 C -0.219 4.219 7 C 0.011 3.989 8 N -0.214 5.214 9 C 0.061 3.939 10 C -0.337 4.337 11 C 0.399 3.601 12 O -0.432 6.432 13 N -0.351 5.351 14 C 0.038 3.962 15 H 0.095 0.905 16 C 0.023 3.977 17 N -0.400 5.400 18 C -0.361 4.361 19 H 0.078 0.922 20 C -0.252 4.252 21 N -0.634 5.634 22 Si 0.768 3.232 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.160 1.160 26 C -0.152 4.152 27 C -0.109 4.109 28 C -0.189 4.189 29 C -0.193 4.193 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.232 0.768 34 H 0.242 0.758 35 H 0.241 0.759 36 H 0.236 0.764 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.076 7.898 -13.745 29.667 hybrid contribution -0.896 1.000 0.114 1.347 sum 24.180 8.898 -13.631 29.149 Atomic orbital electron populations 1.20580 0.84794 1.04944 1.04414 1.22498 0.97645 0.88557 0.92256 1.77418 0.83411 1.21052 1.33744 1.47083 1.07150 1.07123 1.46488 1.23113 0.80856 1.01517 0.93372 1.22538 0.99166 0.95545 1.04653 1.24464 0.96463 0.93179 0.84768 1.68245 0.96673 1.38401 1.18080 1.20315 0.93890 0.81411 0.98279 1.19319 0.90165 0.94754 1.29485 1.16834 0.75686 0.83966 0.83620 1.90762 1.52613 1.67699 1.32175 1.46006 1.67421 1.13374 1.08292 1.21304 0.96066 0.80878 0.97957 0.90504 1.21086 0.88866 0.93105 0.94676 1.42654 1.36260 1.36522 1.24608 1.19027 1.07268 1.11379 0.98445 0.92162 1.25432 0.98116 1.01951 0.99682 1.69874 1.22406 1.40368 1.30723 0.85656 0.79293 0.79139 0.79100 1.21195 1.22299 1.16019 1.21940 0.96008 0.99410 0.97795 1.21069 0.95528 1.00168 0.94159 1.21757 0.99808 0.99874 0.97500 1.21756 0.96464 0.99839 1.01288 0.89389 0.87809 0.90328 0.76820 0.75771 0.75910 0.76352 0.93677 0.94361 0.80127 0.93460 0.89737 0.91081 0.92371 0.93081 0.94337 0.92899 0.93163 0.92589 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 10.26 71.24 0.73 -1.86 16 2 C 0.15 4.77 7.22 43.32 0.31 5.08 16 3 N -0.33 -9.70 12.58 -46.97 -0.59 -10.29 16 4 N -0.31 -7.49 3.86 -191.79 -0.74 -8.24 16 5 C 0.15 1.71 11.29 83.42 0.94 2.65 16 6 C -0.20 -0.99 10.05 22.11 0.22 -0.77 16 7 C 0.19 2.01 11.28 85.16 0.96 2.97 16 8 N -0.50 -11.62 10.47 -191.88 -2.01 -13.63 16 9 C 0.29 8.32 7.90 133.98 1.06 9.38 16 10 C -0.32 -10.63 5.91 -19.88 -0.12 -10.75 16 11 C 0.61 21.48 5.83 86.42 0.50 21.99 16 12 O -0.55 -21.59 12.06 -4.41 -0.05 -21.64 16 13 N -0.70 -23.17 4.46 -446.58 -1.99 -25.16 16 14 C 0.14 4.63 2.33 44.99 0.10 4.73 16 15 H 0.08 2.77 5.92 -2.39 -0.01 2.76 16 16 C 0.15 5.58 5.82 86.38 0.50 6.08 16 17 N -0.75 -35.05 5.24 -343.44 -1.80 -36.85 16 18 C -0.23 -13.08 10.47 84.03 0.88 -12.20 16 19 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 20 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 21 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 22 Si 0.94 45.29 27.74 68.60 1.90 47.20 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.24 -9.93 5.04 99.48 0.50 -9.43 16 26 C -0.11 -3.03 4.36 30.59 0.13 -2.90 16 27 C -0.09 -2.51 2.38 -10.79 -0.03 -2.53 16 28 C -0.13 -3.85 8.03 71.98 0.58 -3.27 16 29 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 30 H 0.09 2.66 6.66 -2.39 -0.02 2.65 16 31 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 2.38 7.97 -2.39 -0.02 2.36 16 33 H 0.22 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.23 -1.36 8.06 -2.91 -0.02 -1.38 16 35 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.40 13.25 8.58 -92.71 -0.80 12.46 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.37 16.63 5.20 -92.71 -0.48 16.15 16 40 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.06 1.92 5.19 -2.39 -0.01 1.91 16 44 H 0.05 1.74 4.75 -2.39 -0.01 1.73 16 45 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -83.50 393.68 2.44 -81.06 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.49 Total: 37.33 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 7.91 Total: 13.18 kcal Atomic # 7 Polarization: -150.30 SS G_CDS: -6.83 Total: -157.13 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Total: -83.50 2.44 -81.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753740937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.781 kcal (2) G-P(sol) polarization free energy of solvation -83.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds