Wall clock time and date at job start Wed Apr 1 2020 04:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47262 * 2 1 4 4 C 1.50707 * 109.46946 * 240.00675 * 2 1 3 5 5 H 1.08001 * 119.99931 * 239.99813 * 4 2 1 6 6 C 1.37873 * 119.99885 * 60.00014 * 4 2 1 7 7 N 1.31519 * 119.99778 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00282 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46908 * 270.00239 * 8 6 4 10 10 H 1.48501 * 109.46998 * 29.99903 * 8 6 4 11 11 H 1.48498 * 109.47162 * 150.00333 * 8 6 4 12 12 N 1.46900 * 109.47369 * 120.00872 * 2 1 3 13 13 C 1.46902 * 110.99812 * 176.04580 * 12 2 1 14 14 C 1.38490 * 110.99726 * 299.99492 * 12 2 1 15 15 N 1.31293 * 126.35757 * 300.87889 * 14 12 2 16 16 N 1.28507 * 110.15359 * 179.97438 * 15 14 12 17 17 C 1.31468 * 109.92932 * 359.97438 * 16 15 14 18 18 C 1.47223 * 126.50469 * 180.02562 * 17 16 15 19 19 C 1.36531 * 126.09382 * 14.97672 * 18 17 16 20 20 C 1.40336 * 107.33059 * 179.97438 * 19 18 17 21 21 C 1.35106 * 107.74836 * 359.97438 * 20 19 18 22 22 N 1.36343 * 108.53689 * 359.73674 * 21 20 19 23 23 H 0.97001 * 125.71634 * 180.30485 * 22 21 20 24 24 N 1.36623 * 126.35018 * 120.55995 * 14 12 2 25 25 C 1.46495 * 127.18486 * 0.02562 * 24 14 12 26 26 C 1.52999 * 109.47445 * 84.26074 * 25 24 14 27 27 H 1.08995 * 110.33412 * 305.04043 * 26 25 24 28 28 C 1.54482 * 110.37437 * 182.78475 * 26 25 24 29 29 C 1.54510 * 104.06254 * 217.19046 * 28 26 25 30 30 C 1.54476 * 104.06238 * 0.02562 * 29 28 26 31 31 O 1.44419 * 104.80752 * 23.97355 * 30 29 28 32 32 H 1.09002 * 109.47034 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46768 * 299.99445 * 1 2 3 34 34 H 1.09000 * 109.47132 * 59.99309 * 1 2 3 35 35 H 0.97001 * 119.99404 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.47331 * 54.10762 * 13 12 2 37 37 H 1.09005 * 109.46829 * 174.10303 * 13 12 2 38 38 H 1.08992 * 109.47307 * 294.09892 * 13 12 2 39 39 H 1.08005 * 126.33029 * 359.97438 * 19 18 17 40 40 H 1.07998 * 126.12376 * 180.02562 * 20 19 18 41 41 H 1.07996 * 125.73297 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47670 * 204.26331 * 25 24 14 43 43 H 1.09007 * 109.47241 * 324.26026 * 25 24 14 44 44 H 1.08996 * 110.50989 * 335.83923 * 28 26 25 45 45 H 1.08998 * 110.50744 * 98.40863 * 28 26 25 46 46 H 1.09004 * 110.50465 * 118.64608 * 29 28 26 47 47 H 1.08993 * 110.50889 * 241.35552 * 29 28 26 48 48 H 1.08998 * 110.37322 * 142.81373 * 30 29 28 49 49 H 1.09009 * 110.37039 * 265.14414 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1372 -0.8593 -3.5567 8 14 0.6247 1.2793 -2.6540 9 1 -0.8029 0.8729 -2.6996 10 1 0.8469 2.1766 -1.4918 11 1 0.9757 1.9955 -3.9066 12 7 2.0197 -0.6927 1.1993 13 6 3.4852 -0.7947 1.1868 14 6 1.5758 -0.0648 2.3511 15 7 1.8067 1.1805 2.6971 16 7 1.2477 1.4375 3.8253 17 6 0.6235 0.3693 4.2698 18 6 -0.1367 0.2582 5.5257 19 6 -0.5664 1.2970 6.3003 20 6 -1.2470 0.7469 7.3974 21 6 -1.2178 -0.5977 7.2681 22 7 -0.5462 -0.9085 6.1229 23 1 -0.3829 -1.8039 5.7875 24 7 0.8111 -0.6245 3.3352 25 6 0.2998 -1.9964 3.3868 26 6 1.3741 -2.9198 3.9647 27 1 2.2982 -2.8297 3.3937 28 6 0.8820 -4.3841 3.9639 29 6 1.4516 -4.9724 5.2742 30 6 2.2200 -3.7937 5.9119 31 8 1.6073 -2.6099 5.3562 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.9025 -0.5279 -4.4376 36 1 3.9173 0.1972 1.0537 37 1 3.8280 -1.2165 2.1316 38 1 3.7974 -1.4403 0.3661 39 1 -0.4112 2.3479 6.1049 40 1 -1.7118 1.2993 8.2006 41 1 -1.6563 -1.3070 7.9543 42 1 -0.5871 -2.0302 4.0196 43 1 0.0407 -2.3257 2.3805 44 1 -0.2073 -4.4209 3.9705 45 1 1.2759 -4.9189 3.0997 46 1 0.6438 -5.3000 5.9285 47 1 2.1291 -5.7986 5.0590 48 1 2.1047 -3.8077 6.9957 49 1 3.2750 -3.8377 5.6412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290879754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:39 Heat of formation + Delta-G solvation = 106.817379 kcal Electronic energy + Delta-G solvation = -32167.798563 eV Core-core repulsion = 28133.187961 eV Total energy + Delta-G solvation = -4034.610601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62696 -40.84063 -39.81689 -37.29117 -35.07687 -32.89875 -32.55223 -31.09666 -30.90639 -30.51727 -30.13638 -27.72931 -26.26421 -25.48797 -24.54230 -22.85910 -22.55870 -21.67319 -21.38361 -20.70942 -20.23998 -19.23969 -18.04655 -17.20500 -16.82041 -16.63758 -16.17205 -15.89310 -15.54412 -15.15608 -14.81923 -14.38484 -14.18343 -14.01486 -13.75674 -13.68229 -13.37439 -12.99228 -12.77425 -12.70110 -12.49384 -12.29475 -12.22075 -12.21246 -12.05463 -11.84912 -11.63244 -11.30297 -11.08710 -11.08597 -10.81035 -10.76549 -10.36146 -10.28339 -10.18991 -9.92665 -9.64365 -9.31099 -9.25764 -8.92485 -8.67419 -8.00408 -7.66194 -6.18490 -4.19455 1.43402 2.35544 2.48754 2.93803 3.03469 3.21971 3.35372 3.39382 3.45063 3.49498 4.09626 4.15257 4.32385 4.35093 4.40485 4.47430 4.57289 4.66075 4.89585 5.02438 5.04894 5.13706 5.14478 5.31622 5.34039 5.40778 5.42474 5.43173 5.51934 5.58129 5.62537 5.75227 5.88870 6.10684 6.16975 6.18929 6.24518 6.28340 6.32120 6.37767 6.43173 6.58836 6.72375 6.85014 6.89039 7.01674 7.06920 7.36838 7.46150 7.59293 7.89267 8.45688 8.83423 9.06208 9.42022 10.93250 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003982 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.759037 B = 7029.145539 C = 8453.102175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.195 3.805 3 H 0.023 0.977 4 C -0.513 4.513 5 H 0.086 0.914 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.878 3.122 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.293 1.293 12 N -0.462 5.462 13 C 0.052 3.948 14 C 0.379 3.621 15 N -0.312 5.312 16 N -0.268 5.268 17 C 0.241 3.759 18 C 0.088 3.912 19 C -0.140 4.140 20 C -0.203 4.203 21 C 0.000 4.000 22 N -0.545 5.545 23 H 0.416 0.584 24 N -0.469 5.469 25 C 0.119 3.881 26 C 0.056 3.944 27 H 0.090 0.910 28 C -0.148 4.148 29 C -0.154 4.154 30 C 0.046 3.954 31 O -0.374 6.374 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.266 0.734 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 -9.165 21.330 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.089 3.911 3 H 0.040 0.960 4 C -0.551 4.551 5 H 0.104 0.896 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.708 3.292 9 H -0.205 1.205 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.188 5.188 13 C -0.095 4.095 14 C 0.024 3.976 15 N -0.155 5.155 16 N -0.110 5.110 17 C -0.024 4.024 18 C -0.026 4.026 19 C -0.168 4.168 20 C -0.228 4.228 21 C -0.133 4.133 22 N -0.145 5.145 23 H 0.257 0.743 24 N -0.163 5.163 25 C -0.005 4.005 26 C -0.002 4.002 27 H 0.108 0.892 28 C -0.186 4.186 29 C -0.192 4.192 30 C -0.031 4.031 31 O -0.293 6.293 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.999 -8.197 21.026 23.114 hybrid contribution -0.735 -0.554 -0.475 1.036 sum -5.733 -8.751 20.551 23.060 Atomic orbital electron populations 1.22178 0.98476 1.00916 0.98758 1.19862 0.91426 0.93766 0.86073 0.95977 1.20827 1.32825 1.13972 0.87479 0.89570 1.24814 0.95561 0.96438 0.95639 1.69853 1.45169 1.40078 0.97965 0.86983 0.80647 0.84041 0.77517 1.20488 1.18848 1.22059 1.59011 1.12167 1.49932 0.97735 1.22234 0.83965 1.01961 1.01338 1.22763 0.94927 0.88550 0.91353 1.74702 1.21247 1.11880 1.07686 1.74405 1.10149 1.20868 1.05564 1.21552 1.03164 0.86208 0.91447 1.16933 1.05775 0.86600 0.93255 1.20942 1.02382 0.98134 0.95324 1.20811 1.07467 0.93227 1.01264 1.21903 1.03195 0.97272 0.90976 1.42377 1.43984 1.08118 1.19973 0.74335 1.46383 1.40961 1.11413 1.17556 1.21991 0.95499 0.78455 1.04519 1.23532 0.99056 0.93567 0.84086 0.89247 1.22932 1.02055 0.94506 0.99103 1.22941 1.00685 0.98879 0.96657 1.23430 0.97019 0.83629 0.99016 1.89097 1.81292 1.36890 1.22038 0.92359 0.95812 0.93149 0.92363 0.94158 0.93716 0.88737 0.83766 0.84275 0.81708 0.89571 0.85802 0.90291 0.89162 0.90529 0.90066 0.88941 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.55 37.16 0.32 -2.95 16 2 C 0.19 4.62 1.57 -68.86 -0.11 4.51 16 3 H 0.02 0.59 7.13 -51.93 -0.37 0.22 16 4 C -0.51 -13.60 8.57 -34.44 -0.29 -13.89 16 5 H 0.09 2.40 6.66 -52.49 -0.35 2.05 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 8 Si 0.88 21.78 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.31 16 10 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 N -0.46 -9.43 4.65 -176.03 -0.82 -10.25 16 13 C 0.05 0.99 9.10 60.07 0.55 1.54 16 14 C 0.38 7.57 4.99 -318.67 -1.59 5.98 16 15 N -0.31 -6.91 12.10 30.34 0.37 -6.54 16 16 N -0.27 -5.57 12.22 32.50 0.40 -5.17 16 17 C 0.24 4.28 7.90 -153.75 -1.21 3.06 16 18 C 0.09 1.32 6.90 -82.38 -0.57 0.75 16 19 C -0.14 -1.95 10.80 -39.41 -0.43 -2.37 16 20 C -0.20 -2.23 10.83 -39.91 -0.43 -2.66 16 21 C 0.00 0.00 11.92 -16.66 -0.20 -0.20 16 22 N -0.55 -6.29 5.42 -9.51 -0.05 -6.34 16 23 H 0.42 4.24 4.67 -40.82 -0.19 4.05 16 24 N -0.47 -7.86 2.83 -114.77 -0.32 -8.18 16 25 C 0.12 1.47 5.27 -4.04 -0.02 1.45 16 26 C 0.06 0.59 3.52 -25.95 -0.09 0.50 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 C -0.15 -1.08 6.63 -25.16 -0.17 -1.25 16 29 C -0.15 -0.93 7.09 -25.16 -0.18 -1.10 16 30 C 0.05 0.35 7.63 37.93 0.29 0.64 16 31 O -0.37 -4.08 9.22 -35.23 -0.32 -4.41 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.51 7.22 -51.93 -0.38 0.13 16 34 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.04 0.74 8.06 -51.93 -0.42 0.33 16 38 H 0.09 1.82 6.46 -51.93 -0.34 1.49 16 39 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.09 0.90 5.93 -51.93 -0.31 0.59 16 43 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.03 385.01 -9.74 -42.77 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.18 Total: 3.96 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -4.24 Total: -3.92 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.34 Total: -61.83 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.32 Total: -4.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.03 -9.74 -42.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290879754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.587 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds