Wall clock time and date at job start Wed Apr 1 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47262 * 2 1 4 4 C 1.50707 * 109.46946 * 240.00675 * 2 1 3 5 5 H 1.08001 * 119.99931 * 239.99813 * 4 2 1 6 6 C 1.37873 * 119.99885 * 60.00014 * 4 2 1 7 7 N 1.31519 * 119.99778 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00282 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46908 * 270.00239 * 8 6 4 10 10 H 1.48501 * 109.46998 * 29.99903 * 8 6 4 11 11 H 1.48498 * 109.47162 * 150.00333 * 8 6 4 12 12 N 1.46900 * 109.47369 * 120.00872 * 2 1 3 13 13 C 1.46902 * 110.99812 * 176.04580 * 12 2 1 14 14 C 1.38490 * 110.99726 * 299.99492 * 12 2 1 15 15 N 1.31293 * 126.35757 * 300.87889 * 14 12 2 16 16 N 1.28507 * 110.15359 * 179.97438 * 15 14 12 17 17 C 1.31468 * 109.92932 * 359.97438 * 16 15 14 18 18 C 1.47223 * 126.50469 * 180.02562 * 17 16 15 19 19 C 1.36531 * 126.09382 * 14.97672 * 18 17 16 20 20 C 1.40336 * 107.33059 * 179.97438 * 19 18 17 21 21 C 1.35106 * 107.74836 * 359.97438 * 20 19 18 22 22 N 1.36343 * 108.53689 * 359.73674 * 21 20 19 23 23 H 0.97001 * 125.71634 * 180.30485 * 22 21 20 24 24 N 1.36623 * 126.35018 * 120.55995 * 14 12 2 25 25 C 1.46495 * 127.18486 * 0.02562 * 24 14 12 26 26 C 1.52999 * 109.47445 * 84.26074 * 25 24 14 27 27 H 1.08995 * 110.33412 * 305.04043 * 26 25 24 28 28 C 1.54482 * 110.37437 * 182.78475 * 26 25 24 29 29 C 1.54510 * 104.06254 * 217.19046 * 28 26 25 30 30 C 1.54476 * 104.06238 * 0.02562 * 29 28 26 31 31 O 1.44419 * 104.80752 * 23.97355 * 30 29 28 32 32 H 1.09002 * 109.47034 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46768 * 299.99445 * 1 2 3 34 34 H 1.09000 * 109.47132 * 59.99309 * 1 2 3 35 35 H 0.97001 * 119.99404 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.47331 * 54.10762 * 13 12 2 37 37 H 1.09005 * 109.46829 * 174.10303 * 13 12 2 38 38 H 1.08992 * 109.47307 * 294.09892 * 13 12 2 39 39 H 1.08005 * 126.33029 * 359.97438 * 19 18 17 40 40 H 1.07998 * 126.12376 * 180.02562 * 20 19 18 41 41 H 1.07996 * 125.73297 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47670 * 204.26331 * 25 24 14 43 43 H 1.09007 * 109.47241 * 324.26026 * 25 24 14 44 44 H 1.08996 * 110.50989 * 335.83923 * 28 26 25 45 45 H 1.08998 * 110.50744 * 98.40863 * 28 26 25 46 46 H 1.09004 * 110.50465 * 118.64608 * 29 28 26 47 47 H 1.08993 * 110.50889 * 241.35552 * 29 28 26 48 48 H 1.08998 * 110.37322 * 142.81373 * 30 29 28 49 49 H 1.09009 * 110.37039 * 265.14414 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1372 -0.8593 -3.5567 8 14 0.6247 1.2793 -2.6540 9 1 -0.8029 0.8729 -2.6996 10 1 0.8469 2.1766 -1.4918 11 1 0.9757 1.9955 -3.9066 12 7 2.0197 -0.6927 1.1993 13 6 3.4852 -0.7947 1.1868 14 6 1.5758 -0.0648 2.3511 15 7 1.8067 1.1805 2.6971 16 7 1.2477 1.4375 3.8253 17 6 0.6235 0.3693 4.2698 18 6 -0.1367 0.2582 5.5257 19 6 -0.5664 1.2970 6.3003 20 6 -1.2470 0.7469 7.3974 21 6 -1.2178 -0.5977 7.2681 22 7 -0.5462 -0.9085 6.1229 23 1 -0.3829 -1.8039 5.7875 24 7 0.8111 -0.6245 3.3352 25 6 0.2998 -1.9964 3.3868 26 6 1.3741 -2.9198 3.9647 27 1 2.2982 -2.8297 3.3937 28 6 0.8820 -4.3841 3.9639 29 6 1.4516 -4.9724 5.2742 30 6 2.2200 -3.7937 5.9119 31 8 1.6073 -2.6099 5.3562 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.9025 -0.5279 -4.4376 36 1 3.9173 0.1972 1.0537 37 1 3.8280 -1.2165 2.1316 38 1 3.7974 -1.4403 0.3661 39 1 -0.4112 2.3479 6.1049 40 1 -1.7118 1.2993 8.2006 41 1 -1.6563 -1.3070 7.9543 42 1 -0.5871 -2.0302 4.0196 43 1 0.0407 -2.3257 2.3805 44 1 -0.2073 -4.4209 3.9705 45 1 1.2759 -4.9189 3.0997 46 1 0.6438 -5.3000 5.9285 47 1 2.1291 -5.7986 5.0590 48 1 2.1047 -3.8077 6.9957 49 1 3.2750 -3.8377 5.6412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290879754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:38 Heat of formation + Delta-G solvation = 85.956191 kcal Electronic energy + Delta-G solvation = -32168.703172 eV Core-core repulsion = 28133.187961 eV Total energy + Delta-G solvation = -4035.515210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.02967 -41.80088 -40.54862 -39.01557 -36.28099 -34.91347 -33.20042 -32.60106 -32.01872 -31.76187 -31.31883 -28.99187 -27.46590 -27.03895 -26.25466 -23.93086 -23.81054 -22.94184 -22.11744 -21.67350 -21.49358 -20.53773 -19.14048 -19.02447 -17.96721 -17.86685 -17.36487 -16.96569 -16.71161 -16.57606 -16.19881 -15.73186 -15.32497 -15.20047 -14.94165 -14.77173 -14.60598 -14.49535 -14.16962 -13.97096 -13.67181 -13.58485 -13.48070 -13.11051 -13.10628 -12.92831 -12.78450 -12.73521 -12.57856 -12.45729 -12.23448 -12.22155 -11.76575 -11.61924 -11.60292 -11.33451 -11.24746 -10.92667 -10.81499 -10.61830 -9.83979 -9.73731 -8.78820 -8.35004 -6.38313 0.19981 1.05268 1.22532 1.25966 1.32903 1.40439 1.84620 2.10181 2.25183 2.29478 2.66384 2.77132 2.99734 3.28452 3.40892 3.47438 3.65828 3.83134 3.93280 4.06022 4.08497 4.20407 4.28594 4.35952 4.38035 4.39166 4.40295 4.46096 4.52081 4.53992 4.64982 4.70721 4.73925 4.77487 4.82748 4.88951 4.94713 4.99448 5.03268 5.12112 5.15673 5.25595 5.34706 5.40953 5.53909 5.68225 5.75430 5.93442 6.04272 6.11421 6.48756 6.63760 6.66296 7.25889 7.59521 8.79696 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003982 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.759037 B = 7029.145539 C = 8453.102175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.202 3.798 3 H -0.006 1.006 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.035 3.965 7 N -0.931 5.931 8 Si 0.926 3.074 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.291 1.291 12 N -0.451 5.451 13 C 0.058 3.942 14 C 0.365 3.635 15 N -0.349 5.349 16 N -0.312 5.312 17 C 0.260 3.740 18 C 0.046 3.954 19 C -0.146 4.146 20 C -0.215 4.215 21 C 0.032 3.968 22 N -0.537 5.537 23 H 0.423 0.577 24 N -0.462 5.462 25 C 0.111 3.889 26 C 0.060 3.940 27 H 0.063 0.937 28 C -0.142 4.142 29 C -0.144 4.144 30 C 0.039 3.961 31 O -0.392 6.392 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.042 0.958 35 H 0.269 0.731 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.165 0.835 41 H 0.214 0.786 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -11.153 24.452 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.095 3.905 3 H 0.011 0.989 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.571 5.571 8 Si 0.755 3.245 9 H -0.187 1.187 10 H -0.196 1.196 11 H -0.219 1.219 12 N -0.177 5.177 13 C -0.090 4.090 14 C 0.008 3.992 15 N -0.193 5.193 16 N -0.153 5.153 17 C -0.005 4.005 18 C -0.068 4.068 19 C -0.175 4.175 20 C -0.239 4.239 21 C -0.103 4.103 22 N -0.137 5.137 23 H 0.265 0.735 24 N -0.154 5.154 25 C -0.011 4.011 26 C 0.002 3.998 27 H 0.081 0.919 28 C -0.180 4.180 29 C -0.181 4.181 30 C -0.037 4.037 31 O -0.312 6.312 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.182 0.818 41 H 0.230 0.770 42 H 0.128 0.872 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.109 0.891 48 H 0.127 0.873 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.466 -10.217 24.157 27.271 hybrid contribution 0.032 0.018 -1.202 1.203 sum -7.434 -10.199 22.955 26.196 Atomic orbital electron populations 1.22029 0.97087 1.01712 0.98498 1.19581 0.92405 0.92013 0.86541 0.98859 1.20956 1.31783 1.13037 0.88576 0.91606 1.25403 0.96815 0.98685 0.95521 1.69947 1.46867 1.41742 0.98502 0.86200 0.80162 0.81157 0.77027 1.18714 1.19588 1.21857 1.58924 1.12597 1.49050 0.97145 1.22187 0.83521 1.00924 1.02322 1.22549 0.96346 0.88565 0.91770 1.74560 1.22511 1.13398 1.08803 1.74303 1.12385 1.22745 1.05853 1.22060 1.01202 0.85390 0.91898 1.16828 1.08296 0.88393 0.93295 1.21158 1.02300 0.97770 0.96246 1.21145 1.07593 0.94076 1.01087 1.22723 1.00043 0.97747 0.89741 1.42393 1.43570 1.07493 1.20205 0.73511 1.46498 1.39926 1.12764 1.16227 1.22366 0.96971 0.76454 1.05291 1.23393 0.97374 0.95179 0.83903 0.91944 1.22940 1.03205 0.91865 1.00006 1.22922 1.01160 0.98167 0.95876 1.23625 0.96718 0.83389 1.00009 1.89073 1.81586 1.38682 1.21849 0.90961 0.95429 0.93903 0.92147 0.95848 0.91421 0.89333 0.84905 0.81778 0.76963 0.87202 0.85944 0.88458 0.89169 0.88501 0.89139 0.87256 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.55 71.98 0.62 -5.45 16 2 C 0.20 9.79 1.57 44.17 0.07 9.86 16 3 H -0.01 -0.34 7.13 -2.39 -0.02 -0.36 16 4 C -0.51 -27.44 8.57 25.60 0.22 -27.22 16 5 H 0.07 3.79 6.66 -2.91 -0.02 3.77 16 6 C 0.04 1.99 5.45 84.65 0.46 2.45 16 7 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 8 Si 0.93 45.33 24.37 68.60 1.67 47.00 16 9 H -0.26 -12.02 6.87 99.48 0.68 -11.34 16 10 H -0.27 -13.48 6.53 99.48 0.65 -12.83 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 N -0.45 -18.92 4.65 -710.84 -3.31 -22.23 16 13 C 0.06 2.29 9.10 127.69 1.16 3.45 16 14 C 0.36 14.90 4.99 260.04 1.30 16.20 16 15 N -0.35 -16.12 12.10 -57.92 -0.70 -16.82 16 16 N -0.31 -13.41 12.22 -51.08 -0.62 -14.03 16 17 C 0.26 9.27 7.90 135.92 1.07 10.35 16 18 C 0.05 1.30 6.90 40.25 0.28 1.57 16 19 C -0.15 -3.88 10.80 22.38 0.24 -3.63 16 20 C -0.22 -3.97 10.83 22.06 0.24 -3.73 16 21 C 0.03 0.47 11.92 83.27 0.99 1.46 16 22 N -0.54 -10.59 5.42 -184.00 -1.00 -11.58 16 23 H 0.42 7.06 4.67 -92.71 -0.43 6.63 16 24 N -0.46 -15.41 2.83 -517.01 -1.46 -16.87 16 25 C 0.11 2.60 5.27 86.38 0.46 3.05 16 26 C 0.06 1.19 3.52 31.10 0.11 1.30 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 C -0.14 -1.69 6.63 31.61 0.21 -1.48 16 29 C -0.14 -1.23 7.09 31.61 0.22 -1.01 16 30 C 0.04 0.50 7.63 72.48 0.55 1.06 16 31 O -0.39 -7.80 9.22 -148.98 -1.37 -9.17 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.03 1.18 7.22 -2.39 -0.02 1.17 16 34 H 0.04 1.97 3.27 -2.39 -0.01 1.96 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.02 0.98 8.12 -2.38 -0.02 0.96 16 37 H 0.07 2.33 8.06 -2.38 -0.02 2.31 16 38 H 0.09 3.58 6.46 -2.39 -0.02 3.56 16 39 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 42 H 0.11 2.01 5.93 -2.39 -0.01 1.99 16 43 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 44 H 0.10 0.82 7.87 -2.39 -0.02 0.80 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -74.96 385.01 2.17 -72.79 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.46 Total: 17.83 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 8.20 Total: 8.22 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -6.79 Total: -136.67 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -1.37 Total: -9.17 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -74.96 2.17 -72.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290879754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.749 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds