Wall clock time and date at job start Wed Apr 1 2020 04:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47013 * 2 1 4 4 N 1.40078 * 126.04091 * 269.98123 * 3 2 1 5 5 C 1.30843 * 108.20542 * 179.73902 * 4 3 2 6 6 C 1.50696 * 125.89975 * 180.25650 * 5 4 3 7 7 C 1.39863 * 108.19913 * 0.43629 * 5 4 3 8 8 C 1.50709 * 126.03813 * 179.82088 * 7 5 4 9 9 C 1.50704 * 109.46659 * 269.68760 * 8 7 5 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99258 * 179.97438 * 9 8 7 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47105 * 90.00179 * 22 20 18 24 24 H 1.48499 * 109.46684 * 210.00001 * 22 20 18 25 25 H 1.48503 * 109.47226 * 329.99788 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 C 1.34947 * 126.02972 * 90.00226 * 3 2 1 28 28 C 1.50700 * 126.13316 * 359.95643 * 27 3 2 29 29 H 1.09005 * 109.47284 * 60.00054 * 1 2 3 30 30 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47232 * 299.99363 * 1 2 3 32 32 H 1.09003 * 109.46808 * 240.00418 * 2 1 3 33 33 H 1.08991 * 109.47272 * 120.00543 * 2 1 3 34 34 H 1.09003 * 109.46879 * 270.21082 * 6 5 4 35 35 H 1.08996 * 109.47413 * 30.20799 * 6 5 4 36 36 H 1.08998 * 109.47264 * 150.21370 * 6 5 4 37 37 H 1.08995 * 109.46797 * 149.69039 * 8 7 5 38 38 H 1.08990 * 109.46910 * 29.68858 * 8 7 5 39 39 H 0.96991 * 120.00480 * 0.02562 * 11 9 8 40 40 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 41 41 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 42 42 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 43 43 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 44 44 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 45 45 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 46 46 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.47464 * 270.02676 * 28 27 3 48 48 H 1.08999 * 109.46773 * 30.02649 * 28 27 3 49 49 H 1.09000 * 109.47311 * 150.02476 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1582 -1.1327 5 6 2.7031 3.3344 -0.7319 6 6 3.1012 4.4824 -1.6233 7 6 2.7116 3.3408 0.6667 8 6 3.1198 4.4951 1.5455 9 6 4.5954 4.4057 1.8387 10 8 5.2510 3.4948 1.3789 11 7 5.1865 5.3387 2.6111 12 6 6.5590 5.2560 2.8833 13 6 7.4346 4.2637 2.4140 14 6 8.6675 4.5352 2.8989 15 6 9.9159 3.7283 2.6511 16 7 8.5825 5.6604 3.6395 17 6 9.6889 6.3120 4.3449 18 6 10.3445 7.3162 3.4323 19 1 9.9739 7.4554 2.4275 20 6 11.4169 8.0579 3.8805 21 7 11.8679 7.8887 5.1042 22 14 12.2291 9.3031 2.7495 23 1 11.5675 10.6228 2.9098 24 1 13.6673 9.4247 3.0987 25 1 12.0983 8.8516 1.3408 26 7 7.2514 6.0957 3.6163 27 6 2.2829 2.1296 1.0913 28 6 2.1283 1.6947 2.5259 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.1671 4.4194 -1.8426 35 1 2.5355 4.4332 -2.5536 36 1 2.8892 5.4248 -1.1185 37 1 2.5606 4.4554 2.4803 38 1 2.9071 5.4339 1.0344 39 1 4.6623 6.0674 2.9785 40 1 7.1701 3.4306 1.7798 41 1 10.0177 2.9690 3.4265 42 1 10.7842 4.3870 2.6713 43 1 9.8488 3.2454 1.6762 44 1 9.3063 6.8207 5.2297 45 1 10.4205 5.5617 4.6450 46 1 12.6226 8.4103 5.4194 47 1 1.1221 1.9325 2.8713 48 1 2.2930 0.6197 2.5994 49 1 2.8578 2.2172 3.1447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292929429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:18 Heat of formation + Delta-G solvation = 104.884711 kcal Electronic energy + Delta-G solvation = -29720.788906 eV Core-core repulsion = 25686.094498 eV Total energy + Delta-G solvation = -4034.694408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59709 -40.61400 -39.07761 -35.29584 -34.70513 -33.39087 -33.12836 -31.82663 -31.32783 -30.79846 -29.41298 -27.50122 -26.84232 -26.33226 -25.99510 -23.41515 -22.88707 -21.49534 -19.83284 -19.69749 -19.54547 -18.97564 -16.83565 -16.73042 -16.58771 -16.06627 -15.44325 -15.32754 -15.27715 -14.84967 -14.41206 -14.14888 -14.00232 -13.72649 -13.49765 -13.43484 -13.30796 -13.24083 -12.91528 -12.66537 -12.46988 -12.36126 -12.35164 -12.26383 -12.08620 -11.95117 -11.75299 -11.62728 -11.61919 -11.38850 -11.05180 -10.82964 -10.54125 -10.39210 -10.22339 -9.86853 -9.49779 -9.47670 -9.12791 -8.63745 -8.38417 -7.89184 -7.40719 -6.24682 -4.32314 1.73754 2.30804 2.44157 2.52516 2.94753 3.05225 3.22356 3.28528 3.33801 3.77921 3.98043 4.19781 4.31571 4.41692 4.60079 4.67473 4.71570 4.84397 4.88601 5.00462 5.08039 5.08893 5.19148 5.21963 5.28357 5.29702 5.40170 5.52589 5.55333 5.59535 5.67054 5.75959 5.82065 5.93777 5.98310 6.06586 6.11543 6.30318 6.50704 6.60169 6.62445 6.79239 6.92576 6.95772 7.06926 7.52287 7.67263 7.68041 7.73961 7.90228 8.08496 8.40181 8.69180 8.77454 9.34054 10.82433 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.002081 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.220661 B =13452.183190 C =13803.001895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.370 5.370 4 N -0.300 5.300 5 C 0.093 3.907 6 C -0.075 4.075 7 C -0.220 4.220 8 C -0.054 4.054 9 C 0.515 3.485 10 O -0.506 6.506 11 N -0.636 5.636 12 C 0.265 3.735 13 C -0.290 4.290 14 C 0.090 3.910 15 C -0.088 4.088 16 N -0.318 5.318 17 C 0.259 3.741 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.323 5.323 27 C 0.103 3.897 28 C -0.094 4.094 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.409 0.591 40 H 0.158 0.842 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.268 0.732 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.357 -13.316 -6.791 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.152 5.152 4 N -0.121 5.121 5 C -0.073 4.073 6 C -0.134 4.134 7 C -0.231 4.231 8 C -0.095 4.095 9 C 0.301 3.699 10 O -0.379 6.379 11 N -0.284 5.284 12 C 0.013 3.987 13 C -0.321 4.321 14 C -0.041 4.041 15 C -0.147 4.147 16 N -0.100 5.100 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.153 5.153 27 C -0.025 4.025 28 C -0.152 4.152 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.244 0.756 40 H 0.175 0.825 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.019 -13.726 -7.246 26.939 hybrid contribution 0.471 0.928 -0.028 1.041 sum -21.548 -12.798 -7.274 26.096 Atomic orbital electron populations 1.22179 0.94389 1.02935 1.03166 1.21612 0.95025 0.78212 1.04354 1.48373 1.51829 1.11742 1.03256 1.77286 1.23790 1.03468 1.07588 1.22096 0.97784 0.94128 0.93286 1.20195 1.02267 0.93196 0.97703 1.18908 1.15213 0.95948 0.93042 1.19837 0.91472 0.98051 1.00167 1.20774 0.89953 0.81391 0.77808 1.90648 1.64844 1.33045 1.49335 1.42597 1.05778 1.29101 1.50908 1.19024 0.84564 0.95892 0.99249 1.21243 0.90699 1.06085 1.14079 1.21055 0.96929 0.90371 0.95770 1.20371 0.93800 0.98581 1.01926 1.48973 1.05739 1.18013 1.37303 1.19673 0.80209 0.93376 0.92634 1.21330 1.14848 1.21390 0.99828 0.91750 1.24930 0.96443 0.97021 0.95415 1.69916 1.25960 1.40990 1.16106 0.86361 0.78339 0.81247 0.80779 1.20332 1.20896 1.19649 1.77246 0.89926 1.22510 1.25657 1.20723 0.99542 0.91595 0.90627 1.20475 1.03249 1.02228 0.89247 0.91651 0.90594 0.92058 0.88799 0.89080 0.90217 0.91029 0.90569 0.88302 0.87935 0.75605 0.82481 0.91166 0.89930 0.90703 0.93041 0.92867 0.92273 0.90207 0.91079 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.13 0.94 6.96 -4.04 -0.03 0.91 16 3 N -0.37 -4.14 3.61 -57.14 -0.21 -4.35 16 4 N -0.30 -4.05 12.58 33.67 0.42 -3.63 16 5 C 0.09 1.19 7.22 -82.41 -0.59 0.59 16 6 C -0.07 -0.76 10.26 36.00 0.37 -0.39 16 7 C -0.22 -2.58 4.59 -105.05 -0.48 -3.07 16 8 C -0.05 -0.52 5.61 -29.03 -0.16 -0.69 16 9 C 0.52 7.27 7.79 -10.98 -0.09 7.19 16 10 O -0.51 -9.09 13.17 5.55 0.07 -9.02 16 11 N -0.64 -9.59 5.45 -11.13 -0.06 -9.65 16 12 C 0.27 5.38 8.11 -154.38 -1.25 4.13 16 13 C -0.29 -6.05 9.52 -39.83 -0.38 -6.43 16 14 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 15 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 16 N -0.32 -7.59 3.59 -58.32 -0.21 -7.80 16 17 C 0.26 6.67 5.81 -5.19 -0.03 6.64 16 18 C -0.54 -14.79 9.39 -34.44 -0.32 -15.12 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 22 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 N -0.32 -7.45 12.59 31.44 0.40 -7.06 16 27 C 0.10 1.11 6.93 -82.26 -0.57 0.54 16 28 C -0.09 -0.70 9.72 36.01 0.35 -0.35 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.49 7.05 -51.93 -0.37 0.12 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.62 7.25 -51.93 -0.38 0.24 16 37 H 0.10 0.69 7.77 -51.93 -0.40 0.29 16 38 H 0.10 0.77 7.25 -51.93 -0.38 0.40 16 39 H 0.41 4.82 8.82 -40.82 -0.36 4.46 16 40 H 0.16 3.25 5.92 -52.49 -0.31 2.94 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.45 7.08 -51.93 -0.37 0.08 16 49 H 0.08 0.70 7.77 -51.93 -0.40 0.29 16 LS Contribution 411.36 15.07 6.20 6.20 Total: -1.00 -35.78 411.36 -8.32 -44.11 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.53 Total: 4.14 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.12 Total: -4.75 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 1.08 Total: -56.82 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.78 -8.32 -44.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292929429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.991 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds