Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47013 * 2 1 4 4 N 1.40078 * 126.04091 * 269.98123 * 3 2 1 5 5 C 1.30843 * 108.20542 * 179.73902 * 4 3 2 6 6 C 1.50696 * 125.89975 * 180.25650 * 5 4 3 7 7 C 1.39863 * 108.19913 * 0.43629 * 5 4 3 8 8 C 1.50709 * 126.03813 * 179.82088 * 7 5 4 9 9 C 1.50704 * 109.46659 * 269.68760 * 8 7 5 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99258 * 179.97438 * 9 8 7 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47105 * 90.00179 * 22 20 18 24 24 H 1.48499 * 109.46684 * 210.00001 * 22 20 18 25 25 H 1.48503 * 109.47226 * 329.99788 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 C 1.34947 * 126.02972 * 90.00226 * 3 2 1 28 28 C 1.50700 * 126.13316 * 359.95643 * 27 3 2 29 29 H 1.09005 * 109.47284 * 60.00054 * 1 2 3 30 30 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47232 * 299.99363 * 1 2 3 32 32 H 1.09003 * 109.46808 * 240.00418 * 2 1 3 33 33 H 1.08991 * 109.47272 * 120.00543 * 2 1 3 34 34 H 1.09003 * 109.46879 * 270.21082 * 6 5 4 35 35 H 1.08996 * 109.47413 * 30.20799 * 6 5 4 36 36 H 1.08998 * 109.47264 * 150.21370 * 6 5 4 37 37 H 1.08995 * 109.46797 * 149.69039 * 8 7 5 38 38 H 1.08990 * 109.46910 * 29.68858 * 8 7 5 39 39 H 0.96991 * 120.00480 * 0.02562 * 11 9 8 40 40 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 41 41 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 42 42 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 43 43 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 44 44 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 45 45 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 46 46 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.47464 * 270.02676 * 28 27 3 48 48 H 1.08999 * 109.46773 * 30.02649 * 28 27 3 49 49 H 1.09000 * 109.47311 * 150.02476 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1582 -1.1327 5 6 2.7031 3.3344 -0.7319 6 6 3.1012 4.4824 -1.6233 7 6 2.7116 3.3408 0.6667 8 6 3.1198 4.4951 1.5455 9 6 4.5954 4.4057 1.8387 10 8 5.2510 3.4948 1.3789 11 7 5.1865 5.3387 2.6111 12 6 6.5590 5.2560 2.8833 13 6 7.4346 4.2637 2.4140 14 6 8.6675 4.5352 2.8989 15 6 9.9159 3.7283 2.6511 16 7 8.5825 5.6604 3.6395 17 6 9.6889 6.3120 4.3449 18 6 10.3445 7.3162 3.4323 19 1 9.9739 7.4554 2.4275 20 6 11.4169 8.0579 3.8805 21 7 11.8679 7.8887 5.1042 22 14 12.2291 9.3031 2.7495 23 1 11.5675 10.6228 2.9098 24 1 13.6673 9.4247 3.0987 25 1 12.0983 8.8516 1.3408 26 7 7.2514 6.0957 3.6163 27 6 2.2829 2.1296 1.0913 28 6 2.1283 1.6947 2.5259 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.1671 4.4194 -1.8426 35 1 2.5355 4.4332 -2.5536 36 1 2.8892 5.4248 -1.1185 37 1 2.5606 4.4554 2.4803 38 1 2.9071 5.4339 1.0344 39 1 4.6623 6.0674 2.9785 40 1 7.1701 3.4306 1.7798 41 1 10.0177 2.9690 3.4265 42 1 10.7842 4.3870 2.6713 43 1 9.8488 3.2454 1.6762 44 1 9.3063 6.8207 5.2297 45 1 10.4205 5.5617 4.6450 46 1 12.6226 8.4103 5.4194 47 1 1.1221 1.9325 2.8713 48 1 2.2930 0.6197 2.5994 49 1 2.8578 2.2172 3.1447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292929429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = 82.602016 kcal Electronic energy + Delta-G solvation = -29721.755157 eV Core-core repulsion = 25686.094498 eV Total energy + Delta-G solvation = -4035.660658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.45952 -42.15364 -40.35976 -36.30263 -35.90264 -35.25405 -33.98988 -33.03747 -32.65273 -32.27582 -30.24532 -28.60500 -28.15482 -27.86291 -27.02295 -24.98418 -23.87569 -22.75804 -21.19681 -20.97125 -20.37828 -20.16045 -18.79267 -17.84721 -17.71520 -17.40428 -17.00314 -16.54970 -16.25057 -16.13352 -15.69127 -15.46492 -15.03302 -14.76704 -14.61587 -14.34392 -14.20647 -14.15185 -13.99853 -13.81216 -13.79714 -13.62875 -13.54330 -13.24472 -13.15343 -13.00074 -12.89900 -12.80424 -12.68831 -12.62984 -12.49508 -12.24141 -12.14367 -12.05166 -11.50699 -11.36552 -11.29481 -10.79671 -10.72434 -9.94630 -9.54468 -9.20885 -9.09293 -8.32077 -6.49833 0.93362 0.98212 1.35526 1.38156 1.39674 1.49611 1.52387 1.64872 1.81694 2.28947 2.33015 2.54236 2.97252 3.54054 3.74111 3.75899 3.98623 4.02814 4.11029 4.15752 4.18139 4.27139 4.35998 4.36565 4.49814 4.60203 4.67992 4.71916 4.74540 4.77487 4.79032 4.83252 4.85633 4.89895 5.00254 5.01655 5.04251 5.08091 5.16893 5.17776 5.20271 5.29303 5.32660 5.54335 5.79741 5.81980 6.00891 6.22127 6.27731 6.39553 6.63288 6.83768 7.07564 7.21098 7.26886 8.73562 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.002081 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.220661 B =13452.183190 C =13803.001895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 N -0.374 5.374 4 N -0.339 5.339 5 C 0.075 3.925 6 C -0.074 4.074 7 C -0.243 4.243 8 C -0.041 4.041 9 C 0.519 3.481 10 O -0.545 6.545 11 N -0.626 5.626 12 C 0.277 3.723 13 C -0.300 4.300 14 C 0.085 3.915 15 C -0.085 4.085 16 N -0.344 5.344 17 C 0.276 3.724 18 C -0.552 4.552 19 H 0.048 0.952 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 N -0.359 5.359 27 C 0.100 3.900 28 C -0.092 4.092 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.426 0.574 40 H 0.161 0.839 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.025 0.975 45 H 0.050 0.950 46 H 0.274 0.726 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.769 -13.670 -6.903 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.002 4.002 3 N -0.156 5.156 4 N -0.161 5.161 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.255 4.255 8 C -0.082 4.082 9 C 0.307 3.693 10 O -0.419 6.419 11 N -0.277 5.277 12 C 0.023 3.977 13 C -0.331 4.331 14 C -0.046 4.046 15 C -0.143 4.143 16 N -0.126 5.126 17 C 0.157 3.843 18 C -0.591 4.591 19 H 0.067 0.933 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.794 3.206 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.195 1.195 26 N -0.189 5.189 27 C -0.029 4.029 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.264 0.736 40 H 0.179 0.821 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.470 -14.087 -7.362 28.346 hybrid contribution 0.795 0.892 -0.021 1.195 sum -22.676 -13.194 -7.383 27.254 Atomic orbital electron populations 1.22109 0.92964 1.04253 1.02356 1.21956 0.96210 0.76751 1.05258 1.48721 1.51382 1.12640 1.02859 1.77204 1.25244 1.04355 1.09333 1.22528 0.97747 0.94420 0.94368 1.20250 1.01344 0.93571 0.98097 1.19200 1.16237 0.97126 0.92910 1.19911 0.87821 0.98664 1.01799 1.21689 0.91472 0.80004 0.76135 1.90628 1.66111 1.34575 1.50622 1.42776 1.03709 1.30131 1.51058 1.19373 0.86602 0.94525 0.97237 1.21387 0.90800 1.06485 1.14380 1.21711 0.98560 0.89672 0.94619 1.20481 0.91424 0.98369 1.04072 1.48761 1.05805 1.19190 1.38852 1.19225 0.80599 0.92837 0.91636 1.21432 1.15635 1.22562 0.99425 0.93329 1.25725 0.96707 0.98567 0.96834 1.69995 1.26371 1.41762 1.17421 0.85370 0.77833 0.78667 0.78714 1.19884 1.19532 1.19532 1.77172 0.89969 1.24122 1.27651 1.21313 0.98254 0.91398 0.91904 1.20593 1.04599 1.02916 0.86919 0.93522 0.88190 0.91684 0.89166 0.86925 0.91598 0.90416 0.88488 0.84857 0.85278 0.73620 0.82130 0.88939 0.91438 0.88305 0.95670 0.93191 0.91735 0.87618 0.89891 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.24 71.98 0.74 -0.76 16 2 C 0.12 1.56 6.96 86.38 0.60 2.16 16 3 N -0.37 -8.00 3.61 -334.69 -1.21 -9.21 16 4 N -0.34 -9.15 12.58 -47.39 -0.60 -9.74 16 5 C 0.07 1.86 7.22 43.10 0.31 2.17 16 6 C -0.07 -1.46 10.26 71.23 0.73 -0.73 16 7 C -0.24 -5.31 4.59 -20.14 -0.09 -5.41 16 8 C -0.04 -0.69 5.61 29.11 0.16 -0.53 16 9 C 0.52 13.76 7.79 87.66 0.68 14.44 16 10 O -0.54 -19.13 13.17 -3.06 -0.04 -19.17 16 11 N -0.63 -17.99 5.45 -307.50 -1.68 -19.66 16 12 C 0.28 11.16 8.11 133.32 1.08 12.24 16 13 C -0.30 -12.47 9.52 22.11 0.21 -12.26 16 14 C 0.08 3.65 6.92 41.38 0.29 3.93 16 15 C -0.09 -2.95 9.89 71.24 0.70 -2.24 16 16 N -0.34 -16.79 3.59 -338.43 -1.22 -18.01 16 17 C 0.28 14.70 5.81 85.63 0.50 15.20 16 18 C -0.55 -31.18 9.39 25.60 0.24 -30.93 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.02 1.25 5.46 84.66 0.46 1.71 16 21 N -0.92 -51.91 13.29 21.45 0.28 -51.62 16 22 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 N -0.36 -16.79 12.59 -54.44 -0.69 -17.48 16 27 C 0.10 1.99 6.93 41.41 0.29 2.28 16 28 C -0.09 -1.12 9.72 71.24 0.69 -0.43 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 0.96 7.05 -2.39 -0.02 0.94 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.41 7.25 -2.39 -0.02 1.40 16 37 H 0.13 1.33 7.77 -2.39 -0.02 1.31 16 38 H 0.13 1.50 7.25 -2.39 -0.02 1.48 16 39 H 0.43 9.18 8.82 -92.71 -0.82 8.37 16 40 H 0.16 6.60 5.92 -2.91 -0.02 6.58 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 43 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 44 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 2.64 7.65 -2.39 -0.02 2.62 16 46 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 47 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.08 0.81 7.08 -2.39 -0.02 0.79 16 49 H 0.08 1.10 7.77 -2.39 -0.02 1.08 16 Total: -1.00 -79.71 411.36 4.64 -75.07 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.16 Total: 23.69 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 7.60 Total: 0.84 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.10 Total: -125.73 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.17 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.71 4.64 -75.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292929429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.671 kcal (2) G-P(sol) polarization free energy of solvation -79.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds