Wall clock time and date at job start Wed Apr 1 2020 04:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46961 * 2 1 4 4 N 1.28444 * 125.19148 * 274.77945 * 3 2 1 5 5 C 1.30861 * 110.93163 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.06624 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47148 * 95.02468 * 6 5 4 8 8 C 1.52998 * 109.47441 * 215.02466 * 6 5 4 9 9 C 1.39669 * 107.86529 * 359.77687 * 5 4 3 10 10 C 1.36601 * 125.18944 * 94.82354 * 3 2 1 11 11 C 1.47128 * 126.89020 * 359.92606 * 10 3 2 12 12 O 1.21650 * 119.99777 * 5.31936 * 11 10 3 13 13 N 1.34777 * 120.00344 * 185.31684 * 11 10 3 14 14 C 1.40076 * 119.99855 * 174.78540 * 13 11 10 15 15 C 1.40429 * 125.97817 * 0.28130 * 14 13 11 16 16 C 1.35231 * 107.86679 * 180.14865 * 15 14 13 17 17 C 1.50698 * 126.06851 * 179.90688 * 16 15 14 18 18 N 1.34976 * 107.86357 * 359.63676 * 16 15 14 19 19 C 1.46499 * 125.97019 * 180.23197 * 18 16 15 20 20 C 1.50698 * 109.47337 * 90.00264 * 19 18 16 21 21 H 1.08005 * 119.99774 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00048 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99991 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47185 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47250 * 120.00105 * 24 22 20 27 27 H 1.48495 * 109.47632 * 239.99878 * 24 22 20 28 28 N 1.31229 * 125.97277 * 180.02562 * 14 13 11 29 29 H 1.09003 * 109.46789 * 60.00753 * 1 2 3 30 30 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47670 * 300.00503 * 1 2 3 32 32 H 1.09000 * 109.47510 * 240.00236 * 2 1 3 33 33 H 1.08997 * 109.47350 * 119.99629 * 2 1 3 34 34 H 1.09001 * 109.47225 * 335.02973 * 6 5 4 35 35 H 1.09001 * 109.46645 * 60.00150 * 7 6 5 36 36 H 1.09000 * 109.47145 * 179.97438 * 7 6 5 37 37 H 1.08991 * 109.47242 * 300.00051 * 7 6 5 38 38 H 1.09001 * 109.47324 * 300.00446 * 8 6 5 39 39 H 1.09009 * 109.46504 * 60.00363 * 8 6 5 40 40 H 1.08997 * 109.47406 * 179.97438 * 8 6 5 41 41 H 1.08000 * 127.32409 * 180.27236 * 9 5 4 42 42 H 0.96996 * 119.99905 * 354.78423 * 13 11 10 43 43 H 1.08001 * 126.06642 * 0.02562 * 15 14 13 44 44 H 1.08994 * 109.47105 * 269.68920 * 17 16 15 45 45 H 1.09001 * 109.47233 * 149.68279 * 17 16 15 46 46 H 1.09007 * 109.46755 * 29.68486 * 17 16 15 47 47 H 1.09009 * 109.46870 * 210.00180 * 19 18 16 48 48 H 1.09001 * 109.47303 * 329.99930 * 19 18 16 49 49 H 0.96994 * 120.00267 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1825 2.1083 -1.0460 5 6 2.6311 3.2949 -0.7249 6 6 2.9428 4.4150 -1.6837 7 6 1.7329 5.3454 -1.7918 8 6 4.1490 5.2044 -1.1710 9 6 2.7654 3.3406 0.6646 10 6 2.3692 2.0922 1.1124 11 6 2.3278 1.6266 2.5075 12 8 2.0434 0.4699 2.7545 13 7 2.6051 2.4816 3.5118 14 6 2.4598 2.0694 4.8426 15 6 2.0417 0.7995 5.2720 16 6 2.0283 0.8023 6.6243 17 6 1.6404 -0.3535 7.5101 18 7 2.4298 2.0221 7.0398 19 6 2.5643 2.4555 8.4327 20 6 3.9591 2.1574 8.9191 21 1 4.6738 1.6912 8.2570 22 6 4.3228 2.4797 10.2094 23 7 3.4524 3.0469 11.0158 24 14 6.0515 2.1094 10.8126 25 1 6.8314 1.4737 9.7204 26 1 6.7143 3.3736 11.2223 27 1 5.9836 1.1871 11.9744 28 7 2.6953 2.8011 5.9063 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.1708 4.0000 -2.6655 35 1 1.5049 5.7604 -0.8100 36 1 1.9585 6.1558 -2.4849 37 1 0.8737 4.7831 -2.1570 38 1 3.9210 5.6195 -0.1892 39 1 5.0109 4.5416 -1.0941 40 1 4.3747 6.0143 -1.8647 41 1 3.1072 4.1726 1.2625 42 1 2.9052 3.3823 3.3130 43 1 1.7758 -0.0314 4.6353 44 1 0.5714 -0.3092 7.7179 45 1 2.1953 -0.2957 8.4465 46 1 1.8741 -1.2916 7.0065 47 1 2.3777 3.5275 8.4993 48 1 1.8421 1.9219 9.0506 49 1 3.7084 3.2739 11.9234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348911644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:14 Heat of formation + Delta-G solvation = 105.018824 kcal Electronic energy + Delta-G solvation = -29798.805052 eV Core-core repulsion = 25764.116460 eV Total energy + Delta-G solvation = -4034.688592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.81159 -40.76203 -39.16936 -36.40659 -35.04592 -33.89185 -33.41968 -31.81943 -31.15399 -30.53302 -29.45893 -27.40922 -26.79146 -26.41500 -24.55367 -24.06859 -23.00358 -22.30070 -20.94979 -20.03420 -19.71933 -18.90470 -17.56365 -16.73324 -16.50823 -16.19894 -16.00758 -15.44441 -15.03595 -14.95985 -14.80652 -14.36148 -14.34112 -14.21083 -13.98577 -13.51222 -13.37354 -13.05751 -12.72696 -12.52620 -12.41075 -12.35162 -12.33009 -12.22806 -11.81549 -11.69313 -11.50072 -11.46491 -11.41148 -11.36538 -11.11119 -10.88678 -10.72193 -10.51611 -10.29378 -10.06610 -9.75688 -9.57490 -9.30238 -9.08087 -8.68035 -8.02019 -7.53888 -6.28996 -4.36748 1.03444 2.07804 2.33453 2.61081 2.78293 2.99794 3.18211 3.26438 3.32389 3.68869 3.75118 4.11408 4.27085 4.38016 4.57331 4.68674 4.72849 4.91448 4.99971 5.04088 5.04835 5.10923 5.26265 5.32243 5.38812 5.40048 5.41778 5.54934 5.61280 5.64187 5.70513 5.77711 5.81426 5.87319 6.00180 6.04681 6.05997 6.14206 6.27849 6.40442 6.45196 6.56285 6.64322 6.87690 7.00602 7.31822 7.51124 7.63831 7.84760 7.89212 7.98378 8.05570 8.56869 8.71266 9.29995 10.78373 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002357 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.899230 B =11875.442457 C =13135.337152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.251 5.251 4 N -0.273 5.273 5 C 0.031 3.969 6 C -0.009 4.009 7 C -0.142 4.142 8 C -0.145 4.145 9 C -0.181 4.181 10 C -0.030 4.030 11 C 0.599 3.401 12 O -0.516 6.516 13 N -0.614 5.614 14 C 0.263 3.737 15 C -0.288 4.288 16 C 0.093 3.907 17 C -0.089 4.089 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.315 5.315 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.160 0.840 42 H 0.413 0.587 43 H 0.159 0.841 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -1.266 -23.206 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.038 5.038 4 N -0.106 5.106 5 C -0.125 4.125 6 C -0.029 4.029 7 C -0.200 4.200 8 C -0.203 4.203 9 C -0.210 4.210 10 C -0.159 4.159 11 C 0.384 3.616 12 O -0.391 6.391 13 N -0.260 5.260 14 C 0.011 3.989 15 C -0.319 4.319 16 C -0.039 4.039 17 C -0.147 4.147 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 N -0.146 5.146 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.178 0.822 42 H 0.250 0.750 43 H 0.177 0.823 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.818 -1.678 -23.192 23.746 hybrid contribution 1.097 0.141 0.766 1.345 sum -3.721 -1.537 -22.426 22.785 Atomic orbital electron populations 1.22085 0.93439 1.03560 1.03074 1.22308 0.96251 0.76404 1.06271 1.45764 1.44192 1.12258 1.01633 1.73102 1.19202 1.04636 1.13618 1.21904 1.03706 0.93380 0.93509 1.19416 0.95983 0.90993 0.96500 1.21821 0.97176 0.98789 1.02233 1.21843 0.96976 0.99791 1.01673 1.22107 1.07225 0.96524 0.95153 1.21114 1.11306 0.94057 0.89413 1.16704 0.77371 0.84949 0.82580 1.90713 1.47670 1.17038 1.83694 1.41948 1.65639 1.16428 1.02023 1.18852 1.02493 0.93823 0.83749 1.21217 1.18909 0.98761 0.93052 1.21070 0.99531 0.89057 0.94200 1.20386 1.01608 0.93647 0.99096 1.49038 1.46732 1.07382 1.06517 1.19725 0.98627 0.97861 0.69791 1.21356 0.96653 1.41761 0.97720 0.91661 1.24930 0.98182 0.94480 0.96186 1.69926 1.34709 1.40937 1.07328 0.86303 0.83435 0.78236 0.78740 1.19557 1.20629 1.20623 1.77278 1.27459 1.19039 0.90794 0.91877 0.89998 0.91642 0.88508 0.85850 0.89894 0.92243 0.92029 0.92593 0.92005 0.92326 0.91939 0.82210 0.75050 0.82320 0.91032 0.89830 0.90578 0.92911 0.92706 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.11 1.06 6.70 -4.04 -0.03 1.03 16 3 N -0.25 -3.04 3.35 -57.14 -0.19 -3.23 16 4 N -0.27 -3.32 11.90 33.63 0.40 -2.92 16 5 C 0.03 0.34 6.12 -82.47 -0.51 -0.17 16 6 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 7 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 8 C -0.14 -0.98 8.79 37.16 0.33 -0.66 16 9 C -0.18 -1.97 9.65 -38.98 -0.38 -2.35 16 10 C -0.03 -0.39 6.96 -82.07 -0.57 -0.96 16 11 C 0.60 8.88 7.76 -12.65 -0.10 8.78 16 12 O -0.52 -8.51 11.73 5.23 0.06 -8.45 16 13 N -0.61 -9.53 5.43 -12.19 -0.07 -9.59 16 14 C 0.26 5.21 8.10 -154.45 -1.25 3.96 16 15 C -0.29 -5.71 9.52 -39.83 -0.38 -6.09 16 16 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 17 C -0.09 -1.47 9.89 36.00 0.36 -1.11 16 18 N -0.31 -7.28 3.59 -58.33 -0.21 -7.49 16 19 C 0.26 6.48 5.81 -5.20 -0.03 6.45 16 20 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 16 21 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 24 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 N -0.32 -7.10 12.59 31.43 0.40 -6.71 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 1.34 5.96 -51.93 -0.31 1.03 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 39 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.16 1.36 7.05 -52.49 -0.37 0.99 16 42 H 0.41 5.28 7.85 -40.82 -0.32 4.96 16 43 H 0.16 2.99 5.92 -52.49 -0.31 2.68 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 1.42 8.14 -51.92 -0.42 0.99 16 48 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 408.09 15.07 6.15 6.15 Total: -1.00 -31.84 408.09 -8.41 -40.25 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.53 Total: 5.21 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.13 Total: -5.08 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 1.07 Total: -53.93 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.84 -8.41 -40.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348911644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.266 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds