Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46961 * 2 1 4 4 N 1.28444 * 125.19148 * 274.77945 * 3 2 1 5 5 C 1.30861 * 110.93163 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.06624 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47148 * 95.02468 * 6 5 4 8 8 C 1.52998 * 109.47441 * 215.02466 * 6 5 4 9 9 C 1.39669 * 107.86529 * 359.77687 * 5 4 3 10 10 C 1.36601 * 125.18944 * 94.82354 * 3 2 1 11 11 C 1.47128 * 126.89020 * 359.92606 * 10 3 2 12 12 O 1.21650 * 119.99777 * 5.31936 * 11 10 3 13 13 N 1.34777 * 120.00344 * 185.31684 * 11 10 3 14 14 C 1.40076 * 119.99855 * 174.78540 * 13 11 10 15 15 C 1.40429 * 125.97817 * 0.28130 * 14 13 11 16 16 C 1.35231 * 107.86679 * 180.14865 * 15 14 13 17 17 C 1.50698 * 126.06851 * 179.90688 * 16 15 14 18 18 N 1.34976 * 107.86357 * 359.63676 * 16 15 14 19 19 C 1.46499 * 125.97019 * 180.23197 * 18 16 15 20 20 C 1.50698 * 109.47337 * 90.00264 * 19 18 16 21 21 H 1.08005 * 119.99774 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00048 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99991 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47185 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47250 * 120.00105 * 24 22 20 27 27 H 1.48495 * 109.47632 * 239.99878 * 24 22 20 28 28 N 1.31229 * 125.97277 * 180.02562 * 14 13 11 29 29 H 1.09003 * 109.46789 * 60.00753 * 1 2 3 30 30 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47670 * 300.00503 * 1 2 3 32 32 H 1.09000 * 109.47510 * 240.00236 * 2 1 3 33 33 H 1.08997 * 109.47350 * 119.99629 * 2 1 3 34 34 H 1.09001 * 109.47225 * 335.02973 * 6 5 4 35 35 H 1.09001 * 109.46645 * 60.00150 * 7 6 5 36 36 H 1.09000 * 109.47145 * 179.97438 * 7 6 5 37 37 H 1.08991 * 109.47242 * 300.00051 * 7 6 5 38 38 H 1.09001 * 109.47324 * 300.00446 * 8 6 5 39 39 H 1.09009 * 109.46504 * 60.00363 * 8 6 5 40 40 H 1.08997 * 109.47406 * 179.97438 * 8 6 5 41 41 H 1.08000 * 127.32409 * 180.27236 * 9 5 4 42 42 H 0.96996 * 119.99905 * 354.78423 * 13 11 10 43 43 H 1.08001 * 126.06642 * 0.02562 * 15 14 13 44 44 H 1.08994 * 109.47105 * 269.68920 * 17 16 15 45 45 H 1.09001 * 109.47233 * 149.68279 * 17 16 15 46 46 H 1.09007 * 109.46755 * 29.68486 * 17 16 15 47 47 H 1.09009 * 109.46870 * 210.00180 * 19 18 16 48 48 H 1.09001 * 109.47303 * 329.99930 * 19 18 16 49 49 H 0.96994 * 120.00267 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1825 2.1083 -1.0460 5 6 2.6311 3.2949 -0.7249 6 6 2.9428 4.4150 -1.6837 7 6 1.7329 5.3454 -1.7918 8 6 4.1490 5.2044 -1.1710 9 6 2.7654 3.3406 0.6646 10 6 2.3692 2.0922 1.1124 11 6 2.3278 1.6266 2.5075 12 8 2.0434 0.4699 2.7545 13 7 2.6051 2.4816 3.5118 14 6 2.4598 2.0694 4.8426 15 6 2.0417 0.7995 5.2720 16 6 2.0283 0.8023 6.6243 17 6 1.6404 -0.3535 7.5101 18 7 2.4298 2.0221 7.0398 19 6 2.5643 2.4555 8.4327 20 6 3.9591 2.1574 8.9191 21 1 4.6738 1.6912 8.2570 22 6 4.3228 2.4797 10.2094 23 7 3.4524 3.0469 11.0158 24 14 6.0515 2.1094 10.8126 25 1 6.8314 1.4737 9.7204 26 1 6.7143 3.3736 11.2223 27 1 5.9836 1.1871 11.9744 28 7 2.6953 2.8011 5.9063 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.1708 4.0000 -2.6655 35 1 1.5049 5.7604 -0.8100 36 1 1.9585 6.1558 -2.4849 37 1 0.8737 4.7831 -2.1570 38 1 3.9210 5.6195 -0.1892 39 1 5.0109 4.5416 -1.0941 40 1 4.3747 6.0143 -1.8647 41 1 3.1072 4.1726 1.2625 42 1 2.9052 3.3823 3.3130 43 1 1.7758 -0.0314 4.6353 44 1 0.5714 -0.3092 7.7179 45 1 2.1953 -0.2957 8.4465 46 1 1.8741 -1.2916 7.0065 47 1 2.3777 3.5275 8.4993 48 1 1.8421 1.9219 9.0506 49 1 3.7084 3.2739 11.9234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348911644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = 87.205862 kcal Electronic energy + Delta-G solvation = -29799.577480 eV Core-core repulsion = 25764.116460 eV Total energy + Delta-G solvation = -4035.461020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.72070 -42.31307 -40.48109 -37.15907 -36.40424 -35.39821 -34.58564 -33.29258 -32.70199 -31.83322 -30.24417 -28.64993 -27.93954 -27.89693 -25.78003 -25.00720 -24.48720 -23.38052 -22.00045 -21.40049 -20.96837 -20.02604 -18.83262 -18.60941 -17.77222 -17.40760 -17.11294 -16.93228 -16.39094 -16.24949 -15.88604 -15.60417 -15.50450 -15.16126 -14.95346 -14.68495 -14.34771 -14.30753 -14.05436 -13.82345 -13.66541 -13.58877 -13.38981 -13.16528 -13.06319 -12.86344 -12.84033 -12.69717 -12.42712 -12.28010 -12.23140 -12.13544 -12.09861 -11.99386 -11.58917 -11.47217 -11.40003 -11.09902 -10.73768 -10.27817 -9.91737 -9.62368 -9.18369 -8.33405 -6.50628 -0.01078 0.96213 1.06624 1.36949 1.38979 1.46197 1.51308 1.60787 1.71671 2.23920 2.27788 2.37314 2.96758 3.24292 3.35440 3.78861 3.86238 3.99203 4.01558 4.12132 4.20750 4.30941 4.32675 4.39046 4.44374 4.51147 4.63633 4.70465 4.73113 4.77430 4.83654 4.86425 4.90669 4.95862 4.97290 5.06535 5.08525 5.09883 5.12559 5.21412 5.23915 5.42540 5.46432 5.52164 5.53656 5.70661 5.80470 5.85136 6.11349 6.23920 6.61543 6.78001 6.98576 7.01763 7.20525 8.72975 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002357 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.899230 B =11875.442457 C =13135.337152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.255 5.255 4 N -0.283 5.283 5 C 0.027 3.973 6 C -0.008 4.008 7 C -0.139 4.139 8 C -0.143 4.143 9 C -0.172 4.172 10 C -0.050 4.050 11 C 0.604 3.396 12 O -0.533 6.533 13 N -0.608 5.608 14 C 0.274 3.726 15 C -0.295 4.295 16 C 0.089 3.911 17 C -0.086 4.086 18 N -0.340 5.340 19 C 0.275 3.725 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.275 1.275 27 H -0.267 1.267 28 N -0.352 5.352 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.182 0.818 42 H 0.426 0.574 43 H 0.171 0.829 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.026 0.974 48 H 0.054 0.946 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -1.539 -24.608 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.017 4.017 3 N -0.043 5.043 4 N -0.117 5.117 5 C -0.129 4.129 6 C -0.028 4.028 7 C -0.197 4.197 8 C -0.201 4.201 9 C -0.201 4.201 10 C -0.179 4.179 11 C 0.391 3.609 12 O -0.409 6.409 13 N -0.257 5.257 14 C 0.020 3.980 15 C -0.326 4.326 16 C -0.041 4.041 17 C -0.144 4.144 18 N -0.123 5.123 19 C 0.156 3.844 20 C -0.590 4.590 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.192 1.192 28 N -0.182 5.182 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.199 0.801 42 H 0.264 0.736 43 H 0.188 0.812 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.298 -1.950 -24.621 25.069 hybrid contribution 0.882 0.216 1.036 1.378 sum -3.416 -1.734 -23.585 23.894 Atomic orbital electron populations 1.22034 0.92602 1.04706 1.01995 1.22462 0.96915 0.75706 1.06650 1.46003 1.44148 1.12830 1.01317 1.73109 1.19516 1.05314 1.13724 1.22416 1.02870 0.93585 0.94011 1.19541 0.96898 0.90423 0.95966 1.21800 0.96333 0.98944 1.02607 1.21842 0.95999 0.99943 1.02287 1.22447 1.05796 0.96321 0.95520 1.20914 1.13344 0.95131 0.88469 1.16958 0.76342 0.84512 0.83137 1.90689 1.48278 1.17832 1.84104 1.41975 1.65865 1.17317 1.00520 1.19128 1.00488 0.93587 0.84814 1.21422 1.19073 0.99110 0.92952 1.21763 0.98231 0.88963 0.95159 1.20514 1.02707 0.93324 0.97871 1.48826 1.48918 1.08594 1.05959 1.19273 0.97762 0.96084 0.71288 1.21456 0.97302 1.42235 0.98014 0.93258 1.25711 1.01946 0.93986 0.96111 1.70003 1.36473 1.41304 1.07796 0.85320 0.78641 0.78332 0.78262 1.19878 1.20006 1.19221 1.77197 1.29540 1.20161 0.91349 0.91808 0.87783 0.93671 0.86582 0.86950 0.89689 0.92404 0.90171 0.93604 0.91695 0.92951 0.90287 0.80051 0.73593 0.81218 0.88804 0.91417 0.87822 0.95627 0.92870 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.24 71.98 0.74 -1.83 16 2 C 0.10 1.91 6.70 86.38 0.58 2.49 16 3 N -0.25 -5.95 3.35 -334.70 -1.12 -7.07 16 4 N -0.28 -6.57 11.90 -47.50 -0.57 -7.13 16 5 C 0.03 0.54 6.12 43.05 0.26 0.81 16 6 C -0.01 -0.12 3.38 -11.54 -0.04 -0.15 16 7 C -0.14 -1.72 9.18 71.98 0.66 -1.06 16 8 C -0.14 -1.62 8.79 71.98 0.63 -0.99 16 9 C -0.17 -3.49 9.65 22.66 0.22 -3.28 16 10 C -0.05 -1.24 6.96 40.78 0.28 -0.96 16 11 C 0.60 17.60 7.76 86.58 0.67 18.27 16 12 O -0.53 -17.37 11.73 -4.19 -0.05 -17.42 16 13 N -0.61 -18.64 5.43 -310.73 -1.69 -20.33 16 14 C 0.27 10.88 8.10 133.36 1.08 11.96 16 15 C -0.29 -11.59 9.52 22.11 0.21 -11.38 16 16 C 0.09 3.65 6.92 41.38 0.29 3.94 16 17 C -0.09 -2.76 9.89 71.24 0.70 -2.06 16 18 N -0.34 -16.17 3.59 -338.44 -1.22 -17.38 16 19 C 0.27 14.30 5.81 85.63 0.50 14.80 16 20 C -0.55 -30.58 9.39 25.60 0.24 -30.34 16 21 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 22 C 0.02 1.27 5.46 84.65 0.46 1.74 16 23 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 24 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 N -0.35 -16.21 12.59 -54.48 -0.69 -16.90 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.11 2.39 5.96 -2.39 -0.01 2.37 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.70 7.37 -2.39 -0.02 0.68 16 39 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.18 2.72 7.05 -2.91 -0.02 2.70 16 42 H 0.43 10.61 7.85 -92.71 -0.73 9.88 16 43 H 0.17 6.26 5.92 -2.91 -0.02 6.24 16 44 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.07 2.40 7.71 -2.39 -0.02 2.38 16 46 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 47 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 48 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 49 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -68.94 408.09 4.72 -64.22 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.24 Total: 26.29 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 7.49 Total: 1.96 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.99 Total: -119.79 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -68.94 4.72 -64.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348911644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.428 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds