Wall clock time and date at job start Wed Apr 1 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 H 1.09005 * 109.47084 * 305.00299 * 3 2 1 5 5 C 1.53001 * 109.46666 * 65.00044 * 3 2 1 6 6 N 1.46499 * 109.47220 * 185.00169 * 3 2 1 7 7 N 1.28470 * 124.88304 * 299.97404 * 6 3 2 8 8 C 1.31814 * 110.06962 * 180.02562 * 7 6 3 9 9 C 1.47686 * 126.51935 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00386 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99885 * 0.03523 * 9 8 7 12 12 C 1.40088 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.40429 * 125.97298 * 0.28509 * 12 11 9 14 14 C 1.35232 * 107.86663 * 180.11714 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.88433 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.62045 * 14 13 12 17 17 C 1.46499 * 125.97289 * 180.22205 * 16 14 13 18 18 C 1.50699 * 109.47148 * 90.00237 * 17 16 14 19 19 H 1.07995 * 120.00097 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47357 * 90.00069 * 22 20 18 24 24 H 1.48500 * 109.47347 * 209.99760 * 22 20 18 25 25 H 1.48496 * 109.47430 * 330.00157 * 22 20 18 26 26 N 1.31229 * 125.98218 * 179.97438 * 12 11 9 27 27 C 1.41516 * 106.96143 * 0.23080 * 8 7 6 28 28 C 1.35036 * 124.88010 * 120.01774 * 6 3 2 29 29 C 1.50692 * 126.38696 * 359.97438 * 28 6 3 30 30 H 1.08998 * 109.46567 * 299.99538 * 1 2 3 31 31 H 1.09001 * 109.47227 * 59.99635 * 1 2 3 32 32 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46895 * 239.99828 * 2 1 3 34 34 H 1.09001 * 109.47227 * 120.00364 * 2 1 3 35 35 H 1.08994 * 109.47535 * 299.99653 * 5 3 2 36 36 H 1.08994 * 109.46999 * 60.00748 * 5 3 2 37 37 H 1.09007 * 109.46588 * 180.02562 * 5 3 2 38 38 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 39 39 H 1.08005 * 126.06445 * 0.02562 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 43 43 H 1.09004 * 109.46567 * 210.00196 * 17 16 14 44 44 H 1.09001 * 109.46954 * 329.99540 * 17 16 14 45 45 H 0.96998 * 119.99415 * 180.02562 * 21 20 18 46 46 H 1.08002 * 127.24413 * 179.77094 * 27 8 7 47 47 H 1.09005 * 109.47159 * 90.00095 * 29 28 6 48 48 H 1.09001 * 109.47410 * 209.99949 * 29 28 6 49 49 H 1.08996 * 109.47582 * 330.00082 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.3067 0.8922 0.7133 8 6 5.5530 1.0709 0.3229 9 6 6.7674 0.5888 1.0114 10 8 7.8649 0.8229 0.5436 11 7 6.6590 -0.1108 2.1582 12 6 7.8108 -0.5686 2.8111 13 6 9.1344 -0.3666 2.3876 14 6 9.9524 -0.9633 3.2840 15 6 11.4578 -0.9994 3.2245 16 7 9.1816 -1.5157 4.2444 17 6 9.6622 -2.2572 5.4129 18 6 9.8861 -1.3020 6.5568 19 1 9.6905 -0.2479 6.4263 20 6 10.3408 -1.7737 7.7700 21 7 10.5785 -3.0574 7.9290 22 14 10.6191 -0.5896 9.1876 23 1 9.3713 -0.4685 9.9837 24 1 11.7109 -1.1023 10.0538 25 1 10.9961 0.7433 8.6526 26 7 7.8419 -1.2564 3.9283 27 6 5.5063 1.8178 -0.8782 28 6 4.1916 2.0269 -1.1233 29 6 3.6085 2.7754 -2.2940 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5491 2.1252 1.3970 36 1 2.0700 1.5874 2.1491 37 1 1.9983 3.1543 1.3072 38 1 5.7833 -0.2974 2.5316 39 1 9.4439 0.1689 1.5022 40 1 11.7786 -1.8832 2.6730 41 1 11.8606 -1.0368 4.2367 42 1 11.8232 -0.1044 2.7209 43 1 8.9199 -3.0016 5.7012 44 1 10.5998 -2.7554 5.1666 45 1 10.8980 -3.3893 8.7826 46 1 6.3434 2.1492 -1.4748 47 1 3.5109 3.8306 -2.0385 48 1 4.2663 2.6699 -3.1568 49 1 2.6267 2.3674 -2.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350865236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:22 Heat of formation + Delta-G solvation = 107.472464 kcal Electronic energy + Delta-G solvation = -29449.299811 eV Core-core repulsion = 25414.717616 eV Total energy + Delta-G solvation = -4034.582195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96426 -40.59997 -38.99056 -36.87880 -34.76281 -33.40860 -33.00396 -32.05329 -31.31560 -30.76680 -29.46807 -27.38135 -26.78783 -26.27820 -25.60822 -24.11717 -22.75275 -21.41181 -21.28767 -20.11291 -19.61572 -18.65054 -17.39504 -16.67407 -16.43140 -16.30398 -16.01439 -15.61156 -15.23397 -14.91901 -14.42552 -14.36538 -14.24478 -13.93825 -13.87496 -13.52283 -13.41607 -13.09880 -12.95109 -12.78443 -12.62575 -12.43905 -12.31610 -12.26581 -12.10813 -12.05632 -11.63510 -11.50726 -11.36331 -11.33287 -11.04794 -10.89377 -10.81021 -10.38851 -10.20869 -9.94817 -9.61041 -9.47735 -9.28085 -9.09764 -8.61156 -7.86304 -7.38228 -6.22196 -4.29645 1.44102 1.90289 2.11795 2.79362 2.89600 3.24275 3.28606 3.30424 3.35847 3.83553 3.91935 3.97464 4.22637 4.28300 4.33196 4.40376 4.48525 4.66274 4.76420 4.82840 4.98777 5.07559 5.10976 5.11383 5.21481 5.32569 5.38328 5.45593 5.46536 5.50417 5.53823 5.72016 5.73338 5.75640 5.79259 6.01716 6.15496 6.23620 6.31930 6.53378 6.56064 6.64285 6.81302 6.98287 7.10064 7.51391 7.64627 7.71017 7.85032 7.92970 8.11336 8.35266 8.71401 8.79950 9.36543 10.84988 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.002181 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.972296 B =12836.533645 C =13891.762869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.145 3.855 4 H 0.108 0.892 5 C -0.165 4.165 6 N -0.273 5.273 7 N -0.254 5.254 8 C -0.010 4.010 9 C 0.611 3.389 10 O -0.510 6.510 11 N -0.619 5.619 12 C 0.265 3.735 13 C -0.289 4.289 14 C 0.091 3.909 15 C -0.088 4.088 16 N -0.317 5.317 17 C 0.258 3.742 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.319 5.319 27 C -0.174 4.174 28 C 0.005 3.995 29 C -0.083 4.083 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.160 0.840 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.267 0.733 46 H 0.163 0.837 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 9.914 -20.690 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.045 3.955 4 H 0.126 0.874 5 C -0.223 4.223 6 N -0.062 5.062 7 N -0.090 5.090 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.381 6.381 11 N -0.265 5.265 12 C 0.013 3.987 13 C -0.320 4.320 14 C -0.040 4.040 15 C -0.146 4.146 16 N -0.099 5.099 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.149 5.149 27 C -0.202 4.202 28 C -0.118 4.118 29 C -0.141 4.141 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.177 0.823 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.180 0.820 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.177 8.856 -19.016 28.422 hybrid contribution 0.499 1.123 -0.066 1.230 sum -18.678 9.979 -19.082 28.506 Atomic orbital electron populations 1.21796 0.94043 1.02795 1.02246 1.21893 0.96843 0.94311 1.04211 1.21715 0.73601 0.99063 1.01118 0.87446 1.22205 1.02628 1.01089 0.96374 1.45651 1.07089 1.37637 1.15853 1.73472 1.00304 1.17561 1.17630 1.21666 0.90698 1.06241 0.98361 1.16742 0.86765 0.77560 0.79418 1.90735 1.25923 1.56275 1.65189 1.42249 1.07861 1.53119 1.23320 1.18944 0.86914 0.99453 0.93435 1.21264 0.89595 1.15041 1.06134 1.21058 0.95093 0.97424 0.90452 1.20376 0.87991 1.02393 1.03889 1.48998 1.01119 1.40472 1.19357 1.19684 0.95545 0.91525 0.79168 1.21337 1.45707 0.94599 0.95720 0.91728 1.24930 0.94816 0.95504 0.98569 1.69927 1.44793 1.12724 1.25559 0.86357 0.78013 0.80870 0.81458 1.20367 1.20894 1.19646 1.77271 0.99301 1.23650 1.14724 1.21484 0.95777 1.04486 0.98451 1.21384 0.91949 1.03583 0.94900 1.20344 1.01015 0.99112 0.93668 0.91854 0.92443 0.91717 0.91181 0.89895 0.89993 0.90482 0.91815 0.74866 0.82265 0.91090 0.89927 0.90601 0.93008 0.92771 0.92291 0.81982 0.90377 0.89474 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.67 37.16 0.36 -0.25 16 2 C -0.13 -0.83 5.58 -26.73 -0.15 -0.97 16 3 C 0.15 0.91 3.02 -67.93 -0.21 0.71 16 4 H 0.11 0.41 6.55 -51.93 -0.34 0.07 16 5 C -0.17 -1.00 9.12 37.16 0.34 -0.66 16 6 N -0.27 -2.65 3.04 -50.66 -0.15 -2.81 16 7 N -0.25 -3.23 11.33 33.42 0.38 -2.85 16 8 C -0.01 -0.14 7.13 -82.77 -0.59 -0.73 16 9 C 0.61 10.59 7.79 -12.40 -0.10 10.49 16 10 O -0.51 -9.91 14.05 5.29 0.07 -9.83 16 11 N -0.62 -11.24 5.44 -12.03 -0.07 -11.31 16 12 C 0.27 5.80 8.11 -154.44 -1.25 4.55 16 13 C -0.29 -6.27 9.52 -39.83 -0.38 -6.65 16 14 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16 15 C -0.09 -1.56 9.89 36.01 0.36 -1.20 16 16 N -0.32 -7.80 3.59 -58.33 -0.21 -8.01 16 17 C 0.26 6.79 5.81 -5.19 -0.03 6.76 16 18 C -0.54 -15.02 9.39 -34.44 -0.32 -15.35 16 19 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 22 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.32 -7.75 12.59 31.43 0.40 -7.36 16 27 C -0.17 -2.06 10.73 -39.36 -0.42 -2.48 16 28 C 0.01 0.05 6.92 -82.21 -0.57 -0.52 16 29 C -0.08 -0.41 9.92 36.00 0.36 -0.05 16 30 H 0.06 0.23 6.56 -51.93 -0.34 -0.12 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.31 6.56 -51.93 -0.34 -0.03 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.42 6.75 8.55 -40.82 -0.35 6.40 16 39 H 0.16 3.33 5.91 -52.48 -0.31 3.02 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.05 1.40 7.65 -51.93 -0.40 1.00 16 45 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.22 7.03 -51.93 -0.36 -0.14 16 LS Contribution 409.42 15.07 6.17 6.17 Total: -1.00 -34.03 409.42 -8.43 -42.46 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.46 Total: 4.98 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.27 Total: -3.22 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 1.08 Total: -56.99 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.03 -8.43 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350865236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.929 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds