Wall clock time and date at job start Wed Apr 1 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47444 * 2 1 4 4 H 1.09005 * 109.47084 * 305.00299 * 3 2 1 5 5 C 1.53001 * 109.46666 * 65.00044 * 3 2 1 6 6 N 1.46499 * 109.47220 * 185.00169 * 3 2 1 7 7 N 1.28470 * 124.88304 * 299.97404 * 6 3 2 8 8 C 1.31814 * 110.06962 * 180.02562 * 7 6 3 9 9 C 1.47686 * 126.51935 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00386 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99885 * 0.03523 * 9 8 7 12 12 C 1.40088 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.40429 * 125.97298 * 0.28509 * 12 11 9 14 14 C 1.35232 * 107.86663 * 180.11714 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.88433 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.62045 * 14 13 12 17 17 C 1.46499 * 125.97289 * 180.22205 * 16 14 13 18 18 C 1.50699 * 109.47148 * 90.00237 * 17 16 14 19 19 H 1.07995 * 120.00097 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99828 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00045 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47357 * 90.00069 * 22 20 18 24 24 H 1.48500 * 109.47347 * 209.99760 * 22 20 18 25 25 H 1.48496 * 109.47430 * 330.00157 * 22 20 18 26 26 N 1.31229 * 125.98218 * 179.97438 * 12 11 9 27 27 C 1.41516 * 106.96143 * 0.23080 * 8 7 6 28 28 C 1.35036 * 124.88010 * 120.01774 * 6 3 2 29 29 C 1.50692 * 126.38696 * 359.97438 * 28 6 3 30 30 H 1.08998 * 109.46567 * 299.99538 * 1 2 3 31 31 H 1.09001 * 109.47227 * 59.99635 * 1 2 3 32 32 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46895 * 239.99828 * 2 1 3 34 34 H 1.09001 * 109.47227 * 120.00364 * 2 1 3 35 35 H 1.08994 * 109.47535 * 299.99653 * 5 3 2 36 36 H 1.08994 * 109.46999 * 60.00748 * 5 3 2 37 37 H 1.09007 * 109.46588 * 180.02562 * 5 3 2 38 38 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 39 39 H 1.08005 * 126.06445 * 0.02562 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 43 43 H 1.09004 * 109.46567 * 210.00196 * 17 16 14 44 44 H 1.09001 * 109.46954 * 329.99540 * 17 16 14 45 45 H 0.96998 * 119.99415 * 180.02562 * 21 20 18 46 46 H 1.08002 * 127.24413 * 179.77094 * 27 8 7 47 47 H 1.09005 * 109.47159 * 90.00095 * 29 28 6 48 48 H 1.09001 * 109.47410 * 209.99949 * 29 28 6 49 49 H 1.08996 * 109.47582 * 330.00082 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.3067 0.8922 0.7133 8 6 5.5530 1.0709 0.3229 9 6 6.7674 0.5888 1.0114 10 8 7.8649 0.8229 0.5436 11 7 6.6590 -0.1108 2.1582 12 6 7.8108 -0.5686 2.8111 13 6 9.1344 -0.3666 2.3876 14 6 9.9524 -0.9633 3.2840 15 6 11.4578 -0.9994 3.2245 16 7 9.1816 -1.5157 4.2444 17 6 9.6622 -2.2572 5.4129 18 6 9.8861 -1.3020 6.5568 19 1 9.6905 -0.2479 6.4263 20 6 10.3408 -1.7737 7.7700 21 7 10.5785 -3.0574 7.9290 22 14 10.6191 -0.5896 9.1876 23 1 9.3713 -0.4685 9.9837 24 1 11.7109 -1.1023 10.0538 25 1 10.9961 0.7433 8.6526 26 7 7.8419 -1.2564 3.9283 27 6 5.5063 1.8178 -0.8782 28 6 4.1916 2.0269 -1.1233 29 6 3.6085 2.7754 -2.2940 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5491 2.1252 1.3970 36 1 2.0700 1.5874 2.1491 37 1 1.9983 3.1543 1.3072 38 1 5.7833 -0.2974 2.5316 39 1 9.4439 0.1689 1.5022 40 1 11.7786 -1.8832 2.6730 41 1 11.8606 -1.0368 4.2367 42 1 11.8232 -0.1044 2.7209 43 1 8.9199 -3.0016 5.7012 44 1 10.5998 -2.7554 5.1666 45 1 10.8980 -3.3893 8.7826 46 1 6.3434 2.1492 -1.4748 47 1 3.5109 3.8306 -2.0385 48 1 4.2663 2.6699 -3.1568 49 1 2.6267 2.3674 -2.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350865236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:21 Heat of formation + Delta-G solvation = 86.929965 kcal Electronic energy + Delta-G solvation = -29450.190600 eV Core-core repulsion = 25414.717616 eV Total energy + Delta-G solvation = -4035.472984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.82131 -42.31411 -40.46244 -37.46181 -36.40198 -35.34256 -33.82605 -33.09307 -32.74934 -32.49228 -30.08414 -28.73867 -27.96185 -27.85183 -26.58244 -25.20553 -24.42836 -22.50305 -22.14201 -21.35809 -21.17366 -19.94249 -18.81217 -18.25678 -17.66343 -17.50757 -17.20649 -17.05256 -16.45349 -16.19383 -16.05912 -15.60984 -15.43147 -15.04193 -14.75403 -14.59952 -14.34358 -14.04823 -13.83758 -13.83282 -13.67602 -13.60497 -13.55561 -13.32528 -13.16802 -13.08616 -12.85283 -12.74520 -12.70354 -12.55606 -12.27210 -12.13326 -12.03210 -11.84582 -11.65156 -11.62096 -11.38995 -11.19986 -10.74727 -10.18063 -9.90419 -9.62114 -9.17607 -8.33970 -6.51554 0.29159 1.00106 1.14353 1.22637 1.37004 1.37905 1.48506 1.52291 1.80896 2.26123 2.38082 2.42961 2.95672 3.14573 3.56517 3.69082 3.74055 3.82762 3.98501 4.00513 4.12160 4.34419 4.39593 4.42022 4.47403 4.58458 4.59486 4.71530 4.75405 4.77596 4.80020 4.84902 4.86972 4.94850 4.96888 5.02616 5.04384 5.09802 5.10475 5.12195 5.23016 5.25181 5.34305 5.41409 5.52608 5.79594 5.86307 5.89796 6.16311 6.24355 6.60510 6.78422 6.98744 6.99925 7.19258 8.72288 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.002181 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.972296 B =12836.533645 C =13891.762869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.137 3.863 4 H 0.145 0.855 5 C -0.163 4.163 6 N -0.265 5.265 7 N -0.268 5.268 8 C -0.040 4.040 9 C 0.613 3.387 10 O -0.534 6.534 11 N -0.616 5.616 12 C 0.271 3.729 13 C -0.298 4.298 14 C 0.091 3.909 15 C -0.085 4.085 16 N -0.340 5.340 17 C 0.275 3.725 18 C -0.554 4.554 19 H 0.048 0.952 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.275 1.275 24 H -0.268 1.268 25 H -0.270 1.270 26 N -0.358 5.358 27 C -0.194 4.194 28 C 0.023 3.977 29 C -0.083 4.083 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.422 0.578 39 H 0.169 0.831 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.024 0.976 44 H 0.055 0.945 45 H 0.274 0.726 46 H 0.167 0.833 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.222 11.911 -22.338 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.039 3.961 4 H 0.163 0.837 5 C -0.221 4.221 6 N -0.055 5.055 7 N -0.106 5.106 8 C -0.198 4.198 9 C 0.399 3.601 10 O -0.408 6.408 11 N -0.264 5.264 12 C 0.018 3.982 13 C -0.329 4.329 14 C -0.040 4.040 15 C -0.143 4.143 16 N -0.123 5.123 17 C 0.156 3.844 18 C -0.592 4.592 19 H 0.067 0.933 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.193 1.193 25 H -0.195 1.195 26 N -0.188 5.188 27 C -0.222 4.222 28 C -0.102 4.102 29 C -0.141 4.141 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.259 0.741 39 H 0.186 0.814 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.185 0.815 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.811 10.850 -20.681 31.281 hybrid contribution 0.850 0.527 0.315 1.049 sum -19.960 11.377 -20.366 30.702 Atomic orbital electron populations 1.21782 0.92033 1.03081 1.03516 1.21851 0.98492 0.93926 1.02691 1.22167 0.71598 0.99611 1.02736 0.83727 1.22206 1.04219 1.00389 0.95236 1.46113 1.08158 1.36094 1.15133 1.73419 1.00114 1.18297 1.18748 1.21333 0.90190 1.08569 0.99713 1.17217 0.87703 0.76490 0.78665 1.90688 1.27260 1.57144 1.65680 1.42376 1.07161 1.53294 1.23607 1.19266 0.88348 0.97973 0.92640 1.21448 0.89532 1.15413 1.06496 1.21780 0.97010 0.95931 0.89272 1.20520 0.85016 1.04940 1.03809 1.48832 1.01707 1.41900 1.19859 1.19278 0.94537 0.90876 0.79682 1.21428 1.46705 0.94034 0.97037 0.93340 1.25736 0.94067 0.97186 1.00818 1.70005 1.44800 1.14179 1.26547 0.85351 0.78273 0.78656 0.78182 1.20056 1.19294 1.19455 1.77190 0.99687 1.25614 1.16334 1.21698 0.97485 1.05072 0.97968 1.22020 0.91026 1.01928 0.95198 1.20567 1.02212 0.99426 0.91884 0.91224 0.90460 0.92029 0.91787 0.92418 0.87306 0.93024 0.91978 0.74065 0.81386 0.88692 0.91260 0.87797 0.95784 0.92733 0.91682 0.81498 0.88693 0.88359 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.67 71.98 0.70 -0.11 16 2 C -0.13 -1.42 5.58 30.59 0.17 -1.25 16 3 C 0.14 1.38 3.02 44.99 0.14 1.52 16 4 H 0.15 0.43 6.55 -2.38 -0.02 0.41 16 5 C -0.16 -1.66 9.12 71.98 0.66 -1.01 16 6 N -0.26 -4.75 3.04 -314.20 -0.96 -5.71 16 7 N -0.27 -6.88 11.33 -48.18 -0.55 -7.42 16 8 C -0.04 -1.17 7.13 42.45 0.30 -0.86 16 9 C 0.61 21.97 7.79 86.74 0.68 22.65 16 10 O -0.53 -21.31 14.05 -3.98 -0.06 -21.37 16 11 N -0.62 -23.39 5.44 -310.25 -1.69 -25.08 16 12 C 0.27 12.32 8.11 133.35 1.08 13.40 16 13 C -0.30 -13.18 9.52 22.11 0.21 -12.97 16 14 C 0.09 4.04 6.92 41.38 0.29 4.33 16 15 C -0.08 -2.95 9.89 71.24 0.70 -2.25 16 16 N -0.34 -17.40 3.59 -338.44 -1.22 -18.61 16 17 C 0.27 15.06 5.81 85.63 0.50 15.56 16 18 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.02 1.29 5.46 84.65 0.46 1.75 16 21 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 22 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 N -0.36 -18.19 12.59 -54.48 -0.69 -18.87 16 27 C -0.19 -4.48 10.73 22.41 0.24 -4.24 16 28 C 0.02 0.37 6.92 41.40 0.29 0.66 16 29 C -0.08 -0.47 9.92 71.23 0.71 0.23 16 30 H 0.07 0.31 6.56 -2.39 -0.02 0.29 16 31 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.51 6.56 -2.39 -0.02 0.50 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.42 14.52 8.55 -92.71 -0.79 13.73 16 39 H 0.17 7.11 5.91 -2.91 -0.02 7.09 16 40 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.07 2.61 7.71 -2.39 -0.02 2.59 16 42 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 43 H 0.02 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.05 2.93 7.65 -2.39 -0.02 2.91 16 45 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 47 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.09 0.12 7.03 -2.39 -0.02 0.10 16 Total: -1.00 -76.76 409.42 4.70 -72.07 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.18 Total: 25.68 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 7.35 Total: 5.67 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.81 Total: -128.13 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.76 4.70 -72.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350865236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.998 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds