Wall clock time and date at job start Wed Apr 1 2020 04:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47269 * 2 1 4 4 C 1.34817 * 125.89242 * 124.99761 * 3 2 1 5 5 C 1.36478 * 107.60739 * 180.02562 * 4 3 2 6 6 C 1.48380 * 126.23222 * 180.02562 * 5 4 3 7 7 N 1.31339 * 126.51322 * 324.95959 * 6 5 4 8 8 N 1.39763 * 109.09614 * 180.02562 * 7 6 5 9 9 H 0.96993 * 125.15968 * 179.97438 * 8 7 6 10 10 C 1.34102 * 109.68390 * 359.74975 * 8 7 6 11 11 C 1.38038 * 107.87384 * 0.40322 * 10 8 7 12 12 C 1.47247 * 126.81261 * 179.87535 * 11 10 8 13 13 O 1.21623 * 119.99711 * 179.68408 * 12 11 10 14 14 N 1.34769 * 120.00298 * 359.67942 * 12 11 10 15 15 C 1.46500 * 120.00237 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47127 * 299.99786 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99949 * 16 15 14 19 19 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 16 15 21 21 H 1.07999 * 119.99816 * 0.02562 * 20 19 16 22 22 C 1.37876 * 120.00344 * 180.02562 * 20 19 16 23 23 N 1.31514 * 119.99769 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00300 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46819 * 59.99744 * 24 22 20 26 26 H 1.48494 * 109.47285 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47196 * 300.00241 * 24 22 20 28 28 C 1.40883 * 107.54064 * 0.26145 * 5 4 3 29 29 N 1.30666 * 108.08930 * 359.55711 * 28 5 4 30 30 H 1.09005 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00302 * 1 2 3 32 32 H 1.08999 * 109.47080 * 60.00248 * 1 2 3 33 33 H 1.09004 * 109.47612 * 240.00112 * 2 1 3 34 34 H 1.09004 * 109.47420 * 120.00083 * 2 1 3 35 35 H 1.08001 * 126.19698 * 0.02562 * 4 3 2 36 36 H 1.08001 * 126.06419 * 180.25422 * 10 8 7 37 37 H 0.97010 * 119.99854 * 0.02562 * 14 12 11 38 38 H 1.08993 * 109.47452 * 60.00368 * 15 14 12 39 39 H 1.09000 * 109.47175 * 300.00158 * 15 14 12 40 40 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 41 41 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 42 42 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 43 43 H 1.09000 * 109.47140 * 60.00051 * 18 16 15 44 44 H 1.09001 * 109.47230 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.47375 * 300.00034 * 18 16 15 46 46 H 1.09000 * 109.47486 * 299.99829 * 19 16 15 47 47 H 1.09001 * 109.47362 * 60.00551 * 19 16 15 48 48 H 0.97000 * 120.00540 * 180.02562 * 23 22 20 49 49 H 1.08001 * 125.95390 * 179.72999 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8724 1.9175 0.8947 5 6 3.0724 3.2213 0.5443 6 6 3.9411 4.1957 1.2496 7 7 4.1445 4.2665 2.5452 8 7 5.0256 5.3179 2.8130 9 1 5.3343 5.5770 3.6952 10 6 5.3832 5.9111 1.6647 11 6 4.7348 5.2625 0.6329 12 6 4.8273 5.5761 -0.8028 13 8 4.2025 4.9160 -1.6108 14 7 5.6042 6.5947 -1.2214 15 6 5.6958 6.9071 -2.6498 16 6 6.6363 8.0968 -2.8524 17 6 6.0916 9.3116 -2.0986 18 6 8.0258 7.7453 -2.3171 19 6 6.7324 8.4225 -4.3442 20 6 7.6583 9.5947 -4.5438 21 1 8.1312 10.0604 -3.6919 22 6 7.9017 10.0726 -5.8140 23 7 7.3261 9.5051 -6.8515 24 14 9.0488 11.5260 -6.0613 25 1 10.3976 11.1860 -5.5413 26 1 9.1422 11.8421 -7.5092 27 1 8.5190 12.7048 -5.3299 28 6 2.2995 3.4752 -0.6060 29 7 1.6781 2.3720 -0.9288 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3176 1.4078 1.7363 36 1 6.0570 6.7492 1.5650 37 1 6.1028 7.1211 -0.5769 38 1 4.7058 7.1571 -3.0313 39 1 6.0842 6.0417 -3.1868 40 1 6.0235 9.0792 -1.0358 41 1 6.7615 10.1593 -2.2433 42 1 5.1017 9.5620 -2.4800 43 1 8.4139 6.8798 -2.8541 44 1 8.6960 8.5927 -2.4618 45 1 7.9577 7.5129 -1.2543 46 1 7.1206 7.5569 -4.8809 47 1 5.7426 8.6728 -4.7260 48 1 7.4976 9.8410 -7.7452 49 1 2.2344 4.4167 -1.1312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360412775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:10 Heat of formation + Delta-G solvation = 97.093074 kcal Electronic energy + Delta-G solvation = -29666.703807 eV Core-core repulsion = 25631.671528 eV Total energy + Delta-G solvation = -4035.032279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46088 -40.79327 -39.04554 -36.93608 -34.75432 -33.54205 -32.41275 -32.10910 -30.50218 -30.22699 -28.88904 -27.08639 -26.49711 -26.11442 -24.19761 -23.44081 -22.62638 -22.24157 -20.75831 -19.81412 -19.42155 -18.89863 -17.77429 -17.02089 -16.36350 -16.21460 -15.61826 -15.29888 -15.15874 -14.84054 -14.49479 -14.47539 -14.33306 -13.93213 -13.56800 -13.40021 -13.33320 -12.96389 -12.80022 -12.67657 -12.43388 -12.37879 -12.05834 -12.04042 -11.70119 -11.13035 -11.11928 -10.99070 -10.86102 -10.75657 -10.61291 -10.37321 -10.25069 -10.14439 -9.84777 -9.74703 -9.36545 -9.13564 -8.99196 -8.90943 -8.57782 -8.33913 -8.18112 -5.97928 -3.99302 1.40505 1.50299 2.14690 2.33481 2.56575 3.10434 3.32734 3.38461 3.39078 3.59234 3.67323 4.19133 4.40741 4.46248 4.47424 4.63910 4.70337 4.86995 4.97434 5.20624 5.26041 5.31964 5.36080 5.37320 5.49138 5.59111 5.63555 5.67035 5.77334 5.82179 5.94399 6.18588 6.23347 6.25994 6.37609 6.43873 6.62098 6.64182 6.70266 6.83842 6.87091 6.91899 7.08678 7.09816 7.16164 7.35994 7.66644 7.72688 7.79595 7.89729 8.00927 8.42387 8.61516 9.05373 9.63540 11.13405 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002167 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.063214 B =12918.391553 C =14284.700432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.375 5.375 4 C 0.087 3.913 5 C -0.176 4.176 6 C 0.219 3.781 7 N -0.299 5.299 8 N -0.468 5.468 9 H 0.442 0.558 10 C 0.104 3.896 11 C -0.277 4.277 12 C 0.586 3.414 13 O -0.540 6.540 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.073 4.073 17 C -0.126 4.126 18 C -0.126 4.126 19 C 0.036 3.964 20 C -0.511 4.511 21 H 0.058 0.942 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.118 3.882 29 N -0.302 5.302 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.393 0.607 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.260 0.740 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 -14.398 22.060 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.155 5.155 4 C -0.063 4.063 5 C -0.190 4.190 6 C 0.050 3.950 7 N -0.121 5.121 8 N -0.173 5.173 9 H 0.286 0.714 10 C -0.046 4.046 11 C -0.292 4.292 12 C 0.373 3.627 13 O -0.418 6.418 14 N -0.371 5.371 15 C 0.008 3.992 16 C -0.073 4.073 17 C -0.184 4.184 18 C -0.184 4.184 19 C -0.001 4.001 20 C -0.550 4.550 21 H 0.076 0.924 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.204 1.204 28 C -0.070 4.070 29 N -0.122 5.122 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.192 0.808 36 H 0.203 0.797 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.154 -16.075 21.553 28.403 hybrid contribution 2.102 2.071 0.405 2.978 sum -7.052 -14.003 21.958 26.981 Atomic orbital electron populations 1.22052 0.93755 1.02728 1.03752 1.21670 0.96112 0.77486 1.03711 1.48596 1.35403 1.10440 1.21097 1.22462 0.94295 0.94096 0.95408 1.17605 1.07828 0.92185 1.01429 1.20876 0.92926 0.92495 0.88710 1.77307 1.12015 1.07342 1.15436 1.45854 1.37148 1.25658 1.08617 0.71435 1.23028 0.97864 0.97669 0.86065 1.21418 1.09573 1.04175 0.94059 1.17144 0.79303 0.80069 0.86176 1.90741 1.45465 1.50463 1.55123 1.46031 1.47940 1.33264 1.09885 1.21593 1.00265 0.98201 0.79099 1.20904 0.93339 0.92452 1.00631 1.21756 1.01244 0.98763 0.96604 1.21758 0.97371 1.01895 0.97352 1.19083 0.97389 0.96751 0.86904 1.21145 1.27009 1.14645 0.92172 0.92356 1.25018 0.96215 0.96976 0.96334 1.69952 1.43553 1.41241 0.98568 0.86715 0.81417 0.83186 0.76984 1.20381 1.21434 1.20361 1.24241 0.91898 0.97641 0.93239 1.77340 1.24821 0.96752 1.13260 0.90810 0.92114 0.90876 0.89688 0.88816 0.80822 0.79730 0.77236 0.91716 0.91806 0.95338 0.91538 0.93306 0.93354 0.91528 0.95356 0.96337 0.96304 0.92991 0.78741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.09 37.15 0.37 -0.70 16 2 C 0.13 0.93 7.22 -4.05 -0.03 0.90 16 3 N -0.37 -4.26 3.67 -61.09 -0.22 -4.49 16 4 C 0.09 0.98 11.40 -16.88 -0.19 0.78 16 5 C -0.18 -2.41 5.82 -105.36 -0.61 -3.03 16 6 C 0.22 2.90 7.27 -80.54 -0.59 2.32 16 7 N -0.30 -3.48 12.65 34.59 0.44 -3.04 16 8 N -0.47 -3.76 7.20 30.82 0.22 -3.54 16 9 H 0.44 1.85 8.96 -182.86 -1.64 0.21 16 10 C 0.10 0.88 11.50 -16.63 -0.19 0.69 16 11 C -0.28 -3.49 6.31 -102.95 -0.65 -4.14 16 12 C 0.59 8.86 7.81 -12.60 -0.10 8.76 16 13 O -0.54 -9.87 12.94 5.26 0.07 -9.80 16 14 N -0.72 -10.07 4.95 -61.44 -0.30 -10.37 16 15 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 16 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 17 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 18 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 19 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 20 C -0.51 -13.41 7.65 -34.44 -0.26 -13.68 16 21 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 22 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 24 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.12 1.77 10.12 -17.05 -0.17 1.60 16 29 N -0.30 -4.42 12.38 30.81 0.38 -4.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.19 0.85 7.48 -52.49 -0.39 0.46 16 37 H 0.39 4.43 5.12 -40.82 -0.21 4.22 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 41 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 45 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.20 3.06 6.38 -52.49 -0.33 2.73 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -35.01 400.27 -8.28 -43.30 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.48 Total: 2.61 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.13 Total: -7.13 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 1.25 Total: -51.05 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.01 -8.28 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360412775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.391 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds