Wall clock time and date at job start Wed Apr 1 2020 04:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47269 * 2 1 4 4 C 1.34817 * 125.89242 * 124.99761 * 3 2 1 5 5 C 1.36478 * 107.60739 * 180.02562 * 4 3 2 6 6 C 1.48380 * 126.23222 * 180.02562 * 5 4 3 7 7 N 1.31339 * 126.51322 * 324.95959 * 6 5 4 8 8 N 1.39763 * 109.09614 * 180.02562 * 7 6 5 9 9 H 0.96993 * 125.15968 * 179.97438 * 8 7 6 10 10 C 1.34102 * 109.68390 * 359.74975 * 8 7 6 11 11 C 1.38038 * 107.87384 * 0.40322 * 10 8 7 12 12 C 1.47247 * 126.81261 * 179.87535 * 11 10 8 13 13 O 1.21623 * 119.99711 * 179.68408 * 12 11 10 14 14 N 1.34769 * 120.00298 * 359.67942 * 12 11 10 15 15 C 1.46500 * 120.00237 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47127 * 299.99786 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99949 * 16 15 14 19 19 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 20 20 C 1.50706 * 109.46953 * 179.97438 * 19 16 15 21 21 H 1.07999 * 119.99816 * 0.02562 * 20 19 16 22 22 C 1.37876 * 120.00344 * 180.02562 * 20 19 16 23 23 N 1.31514 * 119.99769 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00300 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46819 * 59.99744 * 24 22 20 26 26 H 1.48494 * 109.47285 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47196 * 300.00241 * 24 22 20 28 28 C 1.40883 * 107.54064 * 0.26145 * 5 4 3 29 29 N 1.30666 * 108.08930 * 359.55711 * 28 5 4 30 30 H 1.09005 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00302 * 1 2 3 32 32 H 1.08999 * 109.47080 * 60.00248 * 1 2 3 33 33 H 1.09004 * 109.47612 * 240.00112 * 2 1 3 34 34 H 1.09004 * 109.47420 * 120.00083 * 2 1 3 35 35 H 1.08001 * 126.19698 * 0.02562 * 4 3 2 36 36 H 1.08001 * 126.06419 * 180.25422 * 10 8 7 37 37 H 0.97010 * 119.99854 * 0.02562 * 14 12 11 38 38 H 1.08993 * 109.47452 * 60.00368 * 15 14 12 39 39 H 1.09000 * 109.47175 * 300.00158 * 15 14 12 40 40 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 41 41 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 42 42 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 43 43 H 1.09000 * 109.47140 * 60.00051 * 18 16 15 44 44 H 1.09001 * 109.47230 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.47375 * 300.00034 * 18 16 15 46 46 H 1.09000 * 109.47486 * 299.99829 * 19 16 15 47 47 H 1.09001 * 109.47362 * 60.00551 * 19 16 15 48 48 H 0.97000 * 120.00540 * 180.02562 * 23 22 20 49 49 H 1.08001 * 125.95390 * 179.72999 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8724 1.9175 0.8947 5 6 3.0724 3.2213 0.5443 6 6 3.9411 4.1957 1.2496 7 7 4.1445 4.2665 2.5452 8 7 5.0256 5.3179 2.8130 9 1 5.3343 5.5770 3.6952 10 6 5.3832 5.9111 1.6647 11 6 4.7348 5.2625 0.6329 12 6 4.8273 5.5761 -0.8028 13 8 4.2025 4.9160 -1.6108 14 7 5.6042 6.5947 -1.2214 15 6 5.6958 6.9071 -2.6498 16 6 6.6363 8.0968 -2.8524 17 6 6.0916 9.3116 -2.0986 18 6 8.0258 7.7453 -2.3171 19 6 6.7324 8.4225 -4.3442 20 6 7.6583 9.5947 -4.5438 21 1 8.1312 10.0604 -3.6919 22 6 7.9017 10.0726 -5.8140 23 7 7.3261 9.5051 -6.8515 24 14 9.0488 11.5260 -6.0613 25 1 10.3976 11.1860 -5.5413 26 1 9.1422 11.8421 -7.5092 27 1 8.5190 12.7048 -5.3299 28 6 2.2995 3.4752 -0.6060 29 7 1.6781 2.3720 -0.9288 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3176 1.4078 1.7363 36 1 6.0570 6.7492 1.5650 37 1 6.1028 7.1211 -0.5769 38 1 4.7058 7.1571 -3.0313 39 1 6.0842 6.0417 -3.1868 40 1 6.0235 9.0792 -1.0358 41 1 6.7615 10.1593 -2.2433 42 1 5.1017 9.5620 -2.4800 43 1 8.4139 6.8798 -2.8541 44 1 8.6960 8.5927 -2.4618 45 1 7.9577 7.5129 -1.2543 46 1 7.1206 7.5569 -4.8809 47 1 5.7426 8.6728 -4.7260 48 1 7.4976 9.8410 -7.7452 49 1 2.2344 4.4167 -1.1312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360412775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:09 Heat of formation + Delta-G solvation = 72.643551 kcal Electronic energy + Delta-G solvation = -29667.764018 eV Core-core repulsion = 25631.671528 eV Total energy + Delta-G solvation = -4036.092490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33956 -41.66147 -40.28522 -38.41620 -35.50449 -35.10817 -33.90059 -33.23082 -31.41028 -31.11084 -29.73555 -28.99797 -27.88269 -27.47675 -25.08963 -24.88221 -23.57851 -23.43650 -21.69531 -20.80139 -20.43903 -19.94028 -19.02148 -18.30967 -17.82025 -17.36318 -16.56293 -16.38989 -16.36391 -16.26146 -15.65219 -15.54846 -15.27183 -14.93785 -14.81334 -14.69668 -14.49891 -14.25449 -13.91197 -13.87273 -13.74532 -13.54011 -13.15356 -12.94426 -12.78848 -12.72101 -12.50304 -12.30595 -12.26496 -12.17242 -11.98912 -11.92943 -11.67334 -11.46165 -11.09684 -10.96003 -10.83809 -10.69879 -10.47314 -10.32190 -10.02519 -9.68420 -9.07935 -8.10312 -6.18189 0.60423 0.65730 1.15150 1.44600 1.46929 1.54010 1.59110 1.88341 2.10144 2.40012 2.50038 2.61708 3.23869 3.42774 3.63285 3.84655 3.95847 4.05232 4.11004 4.17319 4.22671 4.30198 4.37664 4.41589 4.43712 4.57033 4.62430 4.77339 4.81628 4.83583 4.92141 4.95097 5.00069 5.04946 5.19439 5.19874 5.25072 5.34682 5.48489 5.55161 5.56951 5.61148 5.64383 5.70001 5.87665 5.94401 6.11345 6.34431 6.35546 6.55114 6.74338 6.83516 6.97661 7.49013 7.50314 9.01989 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002167 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.063214 B =12918.391553 C =14284.700432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.370 5.370 4 C 0.099 3.901 5 C -0.202 4.202 6 C 0.204 3.796 7 N -0.312 5.312 8 N -0.447 5.447 9 H 0.461 0.539 10 C 0.142 3.858 11 C -0.317 4.317 12 C 0.585 3.415 13 O -0.582 6.582 14 N -0.705 5.705 15 C 0.147 3.853 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.039 3.961 20 C -0.511 4.511 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.940 5.940 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.294 1.294 27 H -0.266 1.266 28 C 0.099 3.901 29 N -0.335 5.335 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.211 0.789 36 H 0.234 0.766 37 H 0.410 0.590 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.055 0.945 45 H 0.075 0.925 46 H -0.017 1.017 47 H -0.016 1.016 48 H 0.258 0.742 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -14.179 26.487 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 N -0.151 5.151 4 C -0.052 4.052 5 C -0.216 4.216 6 C 0.035 3.965 7 N -0.134 5.134 8 N -0.154 5.154 9 H 0.310 0.690 10 C -0.010 4.010 11 C -0.332 4.332 12 C 0.374 3.626 13 O -0.463 6.463 14 N -0.358 5.358 15 C 0.023 3.977 16 C -0.064 4.064 17 C -0.179 4.179 18 C -0.179 4.179 19 C 0.001 3.999 20 C -0.549 4.549 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.581 5.581 24 Si 0.785 3.215 25 H -0.191 1.191 26 H -0.220 1.220 27 H -0.191 1.191 28 C -0.088 4.088 29 N -0.156 5.156 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.151 0.849 35 H 0.227 0.773 36 H 0.250 0.750 37 H 0.248 0.752 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.001 0.999 47 H 0.002 0.998 48 H 0.067 0.933 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.336 -15.848 26.058 31.369 hybrid contribution 1.490 1.907 -0.901 2.582 sum -5.846 -13.942 25.158 29.351 Atomic orbital electron populations 1.22012 0.93488 1.04074 1.02156 1.22129 0.96427 0.75552 1.05837 1.48966 1.34872 1.11156 1.20099 1.22972 0.93233 0.93374 0.95602 1.17857 1.08569 0.93686 1.01483 1.20920 0.93318 0.92900 0.89351 1.77249 1.12991 1.08702 1.14425 1.45912 1.35531 1.24208 1.09713 0.69000 1.23594 0.95903 0.96969 0.84553 1.21212 1.12532 1.06290 0.93189 1.17554 0.78355 0.79377 0.87272 1.90736 1.47044 1.51886 1.56606 1.45692 1.48239 1.33499 1.08353 1.21125 0.98634 0.96798 0.81187 1.20700 0.95158 0.93777 0.96815 1.21697 0.99923 0.97140 0.99096 1.21698 0.95332 1.00807 1.00024 1.18978 0.94895 0.95029 0.90965 1.21582 1.26326 1.14500 0.92536 0.90695 1.25989 0.98124 1.00123 0.96292 1.70127 1.45684 1.43296 0.98996 0.85581 0.79584 0.79761 0.76590 1.19073 1.21978 1.19052 1.24020 0.93216 0.97304 0.94309 1.77230 1.25824 0.97600 1.14946 0.87946 0.92607 0.93515 0.89296 0.84906 0.77262 0.74964 0.75156 0.93833 0.94103 0.90602 0.92590 0.94692 0.94797 0.92569 0.90619 0.99865 0.99793 0.93283 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.09 71.98 0.73 -1.23 16 2 C 0.12 1.51 7.22 86.38 0.62 2.14 16 3 N -0.37 -8.33 3.67 -347.20 -1.27 -9.60 16 4 C 0.10 2.12 11.40 83.82 0.96 3.07 16 5 C -0.20 -5.61 5.82 -20.34 -0.12 -5.73 16 6 C 0.20 5.20 7.27 44.10 0.32 5.52 16 7 N -0.31 -6.44 12.65 -44.49 -0.56 -7.01 16 8 N -0.45 -5.29 7.20 -56.41 -0.41 -5.70 16 9 H 0.46 1.58 8.96 -213.55 -1.91 -0.33 16 10 C 0.14 1.77 11.50 84.30 0.97 2.74 16 11 C -0.32 -7.44 6.31 -18.78 -0.12 -7.55 16 12 C 0.59 17.62 7.81 86.61 0.68 18.30 16 13 O -0.58 -22.60 12.94 -4.10 -0.05 -22.66 16 14 N -0.71 -18.72 4.95 -466.55 -2.31 -21.03 16 15 C 0.15 5.22 4.56 86.38 0.39 5.61 16 16 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 17 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 18 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 19 C 0.04 1.98 4.04 29.85 0.12 2.10 16 20 C -0.51 -27.18 7.65 25.60 0.20 -26.98 16 21 H 0.08 3.67 5.68 -2.91 -0.02 3.65 16 22 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 23 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 24 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 C 0.10 3.20 10.12 85.51 0.87 4.07 16 29 N -0.33 -10.42 12.38 -56.44 -0.70 -11.12 16 30 H 0.10 0.65 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 0.66 8.07 -2.38 -0.02 0.64 16 35 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.23 0.50 7.48 -2.91 -0.02 0.48 16 37 H 0.41 7.56 5.12 -92.70 -0.47 7.09 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.68 6.86 -2.39 -0.02 1.66 16 41 H 0.06 1.91 6.62 -2.39 -0.02 1.89 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.92 6.62 -2.39 -0.02 1.90 16 45 H 0.08 1.68 6.86 -2.39 -0.02 1.67 16 46 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 47 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 48 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.17 6.17 6.38 -2.91 -0.02 6.15 16 Total: -1.00 -84.12 400.27 2.82 -81.30 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -1.40 Total: 14.58 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 7.20 Total: -6.92 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.97 Total: -111.75 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -84.12 2.82 -81.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360412775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.945 kcal (2) G-P(sol) polarization free energy of solvation -84.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds