Wall clock time and date at job start Wed Apr 1 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00358 * 2 1 4 4 N 1.46902 * 109.47042 * 124.64662 * 3 2 1 5 5 C 1.46903 * 110.99948 * 199.68388 * 4 3 2 6 6 C 1.50699 * 109.47224 * 66.04082 * 5 4 3 7 7 H 1.08004 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00016 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00153 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99944 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47103 * 59.99963 * 10 8 6 12 12 H 1.48498 * 109.46922 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47179 * 299.99959 * 10 8 6 14 14 C 1.46893 * 111.00228 * 75.72597 * 4 3 2 15 15 C 1.50701 * 109.47262 * 199.95375 * 14 4 3 16 16 O 1.21282 * 120.00029 * 355.87272 * 15 14 4 17 17 N 1.34775 * 120.00203 * 175.87504 * 15 14 4 18 18 C 1.47077 * 120.88442 * 179.97438 * 17 15 14 19 19 C 1.53237 * 108.52263 * 231.20944 * 18 17 15 20 20 N 1.46897 * 109.34277 * 306.16753 * 19 18 17 21 21 C 1.38994 * 111.00549 * 187.25215 * 20 19 18 22 22 C 1.39330 * 120.09866 * 179.97438 * 21 20 19 23 23 N 1.31926 * 119.89228 * 179.79496 * 22 21 20 24 24 C 1.32273 * 120.08421 * 0.48523 * 23 22 21 25 25 C 1.38160 * 120.19118 * 359.49015 * 24 23 22 26 26 N 1.32249 * 120.11288 * 0.28149 * 25 24 23 27 27 C 1.46898 * 111.26577 * 63.10348 * 20 19 18 28 28 C 1.47077 * 120.88045 * 0.02562 * 17 15 14 29 29 H 1.07998 * 120.00052 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99435 * 359.97438 * 1 2 3 31 31 H 1.08009 * 119.99687 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46910 * 4.64749 * 3 2 1 33 33 H 1.08997 * 109.47387 * 244.64226 * 3 2 1 34 34 H 1.08997 * 109.47048 * 186.04584 * 5 4 3 35 35 H 1.08997 * 109.46992 * 306.04652 * 5 4 3 36 36 H 0.97001 * 120.00070 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.46893 * 79.95757 * 14 4 3 38 38 H 1.09001 * 109.47244 * 319.95429 * 14 4 3 39 39 H 1.09001 * 109.63015 * 111.49727 * 18 17 15 40 40 H 1.08998 * 109.62849 * 350.91710 * 18 17 15 41 41 H 1.09008 * 109.49302 * 186.20748 * 19 18 17 42 42 H 1.09005 * 109.49510 * 66.12952 * 19 18 17 43 43 H 1.08007 * 120.05329 * 0.02562 * 22 21 20 44 44 H 1.07994 * 119.90535 * 179.76932 * 24 23 22 45 45 H 1.08007 * 119.94365 * 180.25424 * 25 24 23 46 46 H 1.09002 * 109.49301 * 56.86027 * 27 20 19 47 47 H 1.08997 * 109.49589 * 176.93757 * 27 20 19 48 48 H 1.08991 * 109.63069 * 248.49999 * 28 17 15 49 49 H 1.09004 * 109.62902 * 9.08528 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9903 1.3353 1.1394 5 6 3.3902 2.7129 1.4563 6 6 2.1920 3.4833 1.9480 7 1 1.2297 2.9981 2.0185 8 6 2.3242 4.8077 2.3078 9 7 3.4960 5.3986 2.2224 10 14 0.8391 5.7625 2.9180 11 1 0.2993 5.1113 4.1385 12 1 1.2433 7.1551 3.2381 13 1 -0.2058 5.7800 1.8629 14 6 4.1654 0.4914 0.8849 15 6 4.8299 0.1478 2.1931 16 8 4.4150 0.6253 3.2279 17 7 5.8854 -0.6901 2.2132 18 6 6.5490 -1.0382 3.4788 19 6 8.0549 -0.8035 3.3194 20 7 8.5396 -1.5362 2.1420 21 6 9.9258 -1.4812 2.0568 22 6 10.5871 -2.1163 1.0077 23 7 11.9027 -2.0581 0.9286 24 6 12.5941 -1.4062 1.8487 25 6 11.9419 -0.7747 2.8902 26 7 10.6231 -0.8243 2.9745 27 6 7.9162 -1.0360 0.9095 28 6 6.4049 -1.2797 0.9700 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3582 2.1319 0.0833 33 1 2.6264 1.3996 -0.9286 34 1 4.1567 2.6996 2.2311 35 1 3.7871 3.1911 0.5608 36 1 3.5891 6.3302 2.4760 37 1 4.8691 1.0302 0.2504 38 1 3.8529 -0.4252 0.3844 39 1 6.3645 -2.0867 3.7127 40 1 6.1631 -0.4080 4.2800 41 1 8.5747 -1.1598 4.2089 42 1 8.2453 0.2618 3.1887 43 1 10.0233 -2.6523 0.2584 44 1 13.6712 -1.3635 1.7831 45 1 12.5102 -0.2401 3.6370 46 1 8.1085 0.0325 0.8123 47 1 8.3352 -1.5609 0.0510 48 1 6.2066 -2.3514 0.9622 49 1 5.9237 -0.8092 0.1125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428884179.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:55 Heat of formation + Delta-G solvation = 79.177506 kcal Electronic energy + Delta-G solvation = -30272.281535 eV Core-core repulsion = 26236.472379 eV Total energy + Delta-G solvation = -4035.809156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64363 -39.99539 -38.26228 -36.58887 -35.08675 -34.10829 -33.12752 -32.32543 -31.61763 -30.86552 -28.52737 -27.20398 -26.48735 -25.39234 -24.05224 -23.67082 -23.22945 -21.64535 -20.64510 -19.39190 -18.79956 -17.92931 -17.82224 -17.11126 -16.53675 -16.42081 -15.73411 -15.64487 -15.43952 -14.98519 -14.88876 -14.65256 -14.63615 -14.32959 -13.92218 -13.75443 -13.39790 -13.27358 -12.95489 -12.62749 -12.29870 -12.12002 -11.98850 -11.77387 -11.71887 -11.61782 -11.49771 -11.41068 -11.34753 -11.08543 -10.74253 -10.62710 -10.45568 -10.24713 -9.89472 -9.44743 -9.34676 -9.10499 -8.90493 -8.71385 -8.48033 -8.35550 -7.27025 -5.95805 -3.95354 0.45983 0.81139 2.69319 2.83858 3.06337 3.17465 3.38030 3.40355 3.41922 3.45976 3.89711 3.96078 4.17132 4.44928 4.49048 4.59472 4.72049 4.77700 4.90316 4.94358 4.96797 5.09502 5.13383 5.18105 5.27504 5.37534 5.41376 5.42898 5.53301 5.56218 5.66044 5.67466 5.72118 5.86178 5.89801 6.05470 6.19517 6.25182 6.50515 6.53477 6.57559 7.01077 7.02030 7.24083 7.28705 7.29810 7.46979 7.54444 7.84698 8.15064 8.19930 8.53384 8.68126 9.10347 9.67226 11.15568 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.002514 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.833828 B =11134.297310 C =12386.751919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.515 5.515 5 C 0.196 3.804 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.039 3.961 15 C 0.516 3.484 16 O -0.493 6.493 17 N -0.631 5.631 18 C 0.117 3.883 19 C 0.052 3.948 20 N -0.469 5.469 21 C 0.270 3.730 22 C 0.039 3.961 23 N -0.419 5.419 24 C 0.009 3.991 25 C 0.083 3.917 26 N -0.477 5.477 27 C 0.041 3.959 28 C 0.116 3.884 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.042 0.958 35 H -0.014 1.014 36 H 0.260 0.740 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.170 0.830 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -17.333 -5.042 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.153 4.153 3 C -0.044 4.044 4 N -0.240 5.240 5 C 0.071 3.929 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.093 4.093 15 C 0.303 3.697 16 O -0.363 6.363 17 N -0.369 5.369 18 C -0.006 4.006 19 C -0.075 4.075 20 N -0.186 5.186 21 C 0.035 3.965 22 C -0.126 4.126 23 N -0.133 5.133 24 C -0.150 4.150 25 C -0.078 4.078 26 N -0.197 5.197 27 C -0.085 4.085 28 C -0.008 4.008 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.004 0.996 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.187 0.813 44 H 0.185 0.815 45 H 0.187 0.813 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.097 0.903 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.050 -17.491 -3.955 22.781 hybrid contribution 0.164 1.477 -0.306 1.517 sum 14.214 -16.014 -4.261 21.832 Atomic orbital electron populations 1.23707 0.95967 1.01286 1.02583 1.22957 0.95966 0.98266 0.98062 1.21229 0.96092 0.95859 0.91223 1.61861 1.11747 1.14335 1.36050 1.19813 0.97410 0.80456 0.95214 1.21062 0.95299 0.94643 1.42880 0.91943 1.24957 0.95980 0.97706 0.95934 1.69948 1.22927 1.12123 1.49014 0.86577 0.82796 0.78695 0.79444 1.20146 1.21436 1.20328 1.21938 0.94621 0.99332 0.93437 1.20873 0.79036 0.77520 0.92272 1.90764 1.61478 1.49694 1.34388 1.48284 1.32864 1.48549 1.07214 1.21650 0.89772 1.01468 0.87745 1.22488 0.95479 0.97326 0.92255 1.59069 1.00681 1.52944 1.05934 1.20945 0.91183 0.92438 0.91983 1.23287 0.90945 0.99984 0.98431 1.68358 1.07115 1.13103 1.24729 1.23554 1.01793 0.97273 0.92421 1.23630 0.90176 0.96213 0.97732 1.68436 1.08514 1.15634 1.27118 1.22766 0.95667 0.99826 0.90254 1.21742 0.91477 0.99665 0.87917 0.89254 0.88510 0.88547 0.88560 0.95218 0.93973 0.99605 0.93009 0.92814 0.89482 0.91068 0.87938 0.88450 0.92342 0.81285 0.81466 0.81313 0.92475 0.88540 0.90289 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 14.32 29.01 0.42 -2.50 16 2 C -0.13 -2.11 9.33 -36.03 -0.34 -2.45 16 3 C 0.08 1.57 5.24 -4.98 -0.03 1.54 16 4 N -0.52 -11.18 4.00 -238.97 -0.96 -12.13 16 5 C 0.20 5.22 4.33 -4.97 -0.02 5.19 16 6 C -0.50 -14.47 8.23 -34.44 -0.28 -14.76 16 7 H 0.06 1.80 7.31 -52.48 -0.38 1.41 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 10 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.04 0.65 3.66 -4.98 -0.02 0.64 16 15 C 0.52 9.31 7.44 -10.99 -0.08 9.23 16 16 O -0.49 -11.52 14.51 5.56 0.08 -11.43 16 17 N -0.63 -8.44 3.01 -172.49 -0.52 -8.96 16 18 C 0.12 1.45 6.60 -3.60 -0.02 1.43 16 19 C 0.05 0.59 4.83 -3.70 -0.02 0.57 16 20 N -0.47 -4.65 4.66 -172.79 -0.80 -5.45 16 21 C 0.27 2.76 6.40 -154.73 -0.99 1.77 16 22 C 0.04 0.35 10.33 -17.10 -0.18 0.17 16 23 N -0.42 -4.01 10.49 -12.88 -0.14 -4.14 16 24 C 0.01 0.07 11.21 -17.39 -0.19 -0.13 16 25 C 0.08 0.67 11.21 -17.40 -0.20 0.47 16 26 N -0.48 -5.13 8.85 -12.24 -0.11 -5.24 16 27 C 0.04 0.35 5.42 -3.72 -0.02 0.33 16 28 C 0.12 1.05 6.47 -3.62 -0.02 1.03 16 29 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.10 1.47 7.84 -52.49 -0.41 1.06 16 31 H 0.10 1.34 7.28 -52.48 -0.38 0.95 16 32 H 0.10 2.04 6.23 -51.93 -0.32 1.71 16 33 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.04 1.26 6.60 -51.93 -0.34 0.92 16 35 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 38 H 0.09 1.17 6.47 -51.93 -0.34 0.84 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.50 7.06 -51.93 -0.37 1.13 16 41 H 0.10 1.07 7.66 -51.92 -0.40 0.68 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.17 1.11 7.15 -52.48 -0.38 0.73 16 44 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.56 6.65 -51.93 -0.35 0.21 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.77 6.04 -51.93 -0.31 0.45 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -36.51 395.30 -10.17 -46.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.31 Total: 0.08 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.09 Total: 4.06 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -1.79 Total: -62.67 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.51 -10.17 -46.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428884179.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.861 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds