Wall clock time and date at job start Wed Apr 1 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00358 * 2 1 4 4 N 1.46902 * 109.47042 * 124.64662 * 3 2 1 5 5 C 1.46903 * 110.99948 * 199.68388 * 4 3 2 6 6 C 1.50699 * 109.47224 * 66.04082 * 5 4 3 7 7 H 1.08004 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00016 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00153 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99944 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47103 * 59.99963 * 10 8 6 12 12 H 1.48498 * 109.46922 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47179 * 299.99959 * 10 8 6 14 14 C 1.46893 * 111.00228 * 75.72597 * 4 3 2 15 15 C 1.50701 * 109.47262 * 199.95375 * 14 4 3 16 16 O 1.21282 * 120.00029 * 355.87272 * 15 14 4 17 17 N 1.34775 * 120.00203 * 175.87504 * 15 14 4 18 18 C 1.47077 * 120.88442 * 179.97438 * 17 15 14 19 19 C 1.53237 * 108.52263 * 231.20944 * 18 17 15 20 20 N 1.46897 * 109.34277 * 306.16753 * 19 18 17 21 21 C 1.38994 * 111.00549 * 187.25215 * 20 19 18 22 22 C 1.39330 * 120.09866 * 179.97438 * 21 20 19 23 23 N 1.31926 * 119.89228 * 179.79496 * 22 21 20 24 24 C 1.32273 * 120.08421 * 0.48523 * 23 22 21 25 25 C 1.38160 * 120.19118 * 359.49015 * 24 23 22 26 26 N 1.32249 * 120.11288 * 0.28149 * 25 24 23 27 27 C 1.46898 * 111.26577 * 63.10348 * 20 19 18 28 28 C 1.47077 * 120.88045 * 0.02562 * 17 15 14 29 29 H 1.07998 * 120.00052 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99435 * 359.97438 * 1 2 3 31 31 H 1.08009 * 119.99687 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.46910 * 4.64749 * 3 2 1 33 33 H 1.08997 * 109.47387 * 244.64226 * 3 2 1 34 34 H 1.08997 * 109.47048 * 186.04584 * 5 4 3 35 35 H 1.08997 * 109.46992 * 306.04652 * 5 4 3 36 36 H 0.97001 * 120.00070 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.46893 * 79.95757 * 14 4 3 38 38 H 1.09001 * 109.47244 * 319.95429 * 14 4 3 39 39 H 1.09001 * 109.63015 * 111.49727 * 18 17 15 40 40 H 1.08998 * 109.62849 * 350.91710 * 18 17 15 41 41 H 1.09008 * 109.49302 * 186.20748 * 19 18 17 42 42 H 1.09005 * 109.49510 * 66.12952 * 19 18 17 43 43 H 1.08007 * 120.05329 * 0.02562 * 22 21 20 44 44 H 1.07994 * 119.90535 * 179.76932 * 24 23 22 45 45 H 1.08007 * 119.94365 * 180.25424 * 25 24 23 46 46 H 1.09002 * 109.49301 * 56.86027 * 27 20 19 47 47 H 1.08997 * 109.49589 * 176.93757 * 27 20 19 48 48 H 1.08991 * 109.63069 * 248.49999 * 28 17 15 49 49 H 1.09004 * 109.62902 * 9.08528 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9903 1.3353 1.1394 5 6 3.3902 2.7129 1.4563 6 6 2.1920 3.4833 1.9480 7 1 1.2297 2.9981 2.0185 8 6 2.3242 4.8077 2.3078 9 7 3.4960 5.3986 2.2224 10 14 0.8391 5.7625 2.9180 11 1 0.2993 5.1113 4.1385 12 1 1.2433 7.1551 3.2381 13 1 -0.2058 5.7800 1.8629 14 6 4.1654 0.4914 0.8849 15 6 4.8299 0.1478 2.1931 16 8 4.4150 0.6253 3.2279 17 7 5.8854 -0.6901 2.2132 18 6 6.5490 -1.0382 3.4788 19 6 8.0549 -0.8035 3.3194 20 7 8.5396 -1.5362 2.1420 21 6 9.9258 -1.4812 2.0568 22 6 10.5871 -2.1163 1.0077 23 7 11.9027 -2.0581 0.9286 24 6 12.5941 -1.4062 1.8487 25 6 11.9419 -0.7747 2.8902 26 7 10.6231 -0.8243 2.9745 27 6 7.9162 -1.0360 0.9095 28 6 6.4049 -1.2797 0.9700 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3582 2.1319 0.0833 33 1 2.6264 1.3996 -0.9286 34 1 4.1567 2.6996 2.2311 35 1 3.7871 3.1911 0.5608 36 1 3.5891 6.3302 2.4760 37 1 4.8691 1.0302 0.2504 38 1 3.8529 -0.4252 0.3844 39 1 6.3645 -2.0867 3.7127 40 1 6.1631 -0.4080 4.2800 41 1 8.5747 -1.1598 4.2089 42 1 8.2453 0.2618 3.1887 43 1 10.0233 -2.6523 0.2584 44 1 13.6712 -1.3635 1.7831 45 1 12.5102 -0.2401 3.6370 46 1 8.1085 0.0325 0.8123 47 1 8.3352 -1.5609 0.0510 48 1 6.2066 -2.3514 0.9622 49 1 5.9237 -0.8092 0.1125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428884179.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:54 Heat of formation + Delta-G solvation = 51.953678 kcal Electronic energy + Delta-G solvation = -30273.462049 eV Core-core repulsion = 26236.472379 eV Total energy + Delta-G solvation = -4036.989670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.35315 -41.15396 -39.37232 -38.10344 -36.10677 -34.96819 -34.87281 -33.96240 -32.62979 -31.61913 -30.07929 -28.66102 -27.72751 -26.24566 -25.70613 -24.45682 -24.16317 -23.01613 -22.04760 -20.58974 -19.96165 -18.88737 -18.56913 -18.53650 -17.93182 -17.47424 -16.99726 -16.86313 -16.45885 -16.36018 -16.07630 -15.70153 -15.56224 -15.46426 -15.36139 -15.04291 -14.75128 -14.16621 -14.11642 -13.93516 -13.82283 -13.47955 -13.36743 -13.03836 -12.78755 -12.74855 -12.60736 -12.58469 -12.47649 -12.39211 -12.35153 -12.25076 -12.02515 -11.73795 -11.28946 -11.19832 -10.70466 -10.57716 -10.20959 -10.11361 -9.72598 -9.32371 -8.96726 -8.20318 -6.28446 -0.17889 0.13603 1.36452 1.41626 1.47699 1.49463 1.70589 1.86948 2.28804 2.39544 2.74053 3.12501 3.22359 3.35410 3.40679 3.51801 3.61523 3.76873 3.90214 4.03266 4.08688 4.13528 4.22337 4.26122 4.27236 4.30302 4.34884 4.43427 4.47510 4.55565 4.62688 4.63261 4.73110 4.77945 4.92294 4.95492 5.05574 5.18777 5.20185 5.28800 5.37121 5.54113 5.63628 5.79143 5.80795 6.04803 6.05745 6.31634 6.36371 6.37521 6.62886 6.81604 6.85793 7.31834 7.39478 8.91044 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.002514 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.833828 B =11134.297310 C =12386.751919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.533 5.533 5 C 0.218 3.782 6 C -0.516 4.516 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.261 1.261 14 C 0.040 3.960 15 C 0.510 3.490 16 O -0.561 6.561 17 N -0.622 5.622 18 C 0.119 3.881 19 C 0.068 3.932 20 N -0.463 5.463 21 C 0.250 3.750 22 C 0.041 3.959 23 N -0.439 5.439 24 C 0.015 3.985 25 C 0.075 3.925 26 N -0.508 5.508 27 C 0.042 3.958 28 C 0.110 3.890 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.001 0.999 35 H -0.037 1.037 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.194 0.806 44 H 0.200 0.800 45 H 0.196 0.804 46 H 0.034 0.966 47 H 0.134 0.866 48 H 0.109 0.891 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.894 -19.778 -6.710 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.163 4.163 3 C -0.042 4.042 4 N -0.257 5.257 5 C 0.092 3.908 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.185 1.185 14 C -0.091 4.091 15 C 0.299 3.701 16 O -0.438 6.438 17 N -0.358 5.358 18 C -0.004 4.004 19 C -0.061 4.061 20 N -0.181 5.181 21 C 0.015 3.985 22 C -0.124 4.124 23 N -0.154 5.154 24 C -0.144 4.144 25 C -0.085 4.085 26 N -0.228 5.228 27 C -0.084 4.084 28 C -0.012 4.012 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.019 0.981 35 H -0.019 1.019 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.047 0.953 43 H 0.210 0.790 44 H 0.217 0.783 45 H 0.213 0.787 46 H 0.053 0.947 47 H 0.152 0.848 48 H 0.127 0.873 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.297 -19.999 -5.682 25.232 hybrid contribution 0.254 2.170 0.186 2.192 sum 14.551 -17.829 -5.496 23.660 Atomic orbital electron populations 1.23927 0.95807 1.02226 1.00661 1.22903 0.96255 0.97455 0.99699 1.21194 0.95328 0.96900 0.90790 1.61664 1.14064 1.11687 1.38270 1.19299 0.95420 0.83381 0.92730 1.21393 0.95816 0.95353 1.42909 0.92345 1.25901 0.99115 0.98839 0.95990 1.70084 1.25159 1.12507 1.49971 0.85485 0.79232 0.77147 0.79063 1.20020 1.20677 1.18544 1.22061 0.93342 1.00302 0.93379 1.21146 0.79774 0.77455 0.91742 1.90733 1.64035 1.52589 1.36423 1.48306 1.31271 1.46963 1.09225 1.21646 0.90196 1.01852 0.86739 1.22197 0.94580 0.95769 0.93511 1.59136 1.01010 1.52379 1.05576 1.21086 0.91116 0.93465 0.92815 1.23595 0.91014 0.99498 0.98270 1.68432 1.07433 1.13950 1.25539 1.24096 1.03234 0.95665 0.91383 1.24123 0.89487 0.96270 0.98593 1.68402 1.10019 1.16448 1.27943 1.22862 0.95396 0.99072 0.91051 1.22143 0.91679 1.01205 0.86162 0.86201 0.89706 0.85713 0.91819 0.93634 0.98135 1.01933 0.92859 0.91784 0.84916 0.88883 0.91015 0.88304 0.95307 0.78962 0.78331 0.78741 0.94712 0.84844 0.87262 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.13 14.32 67.78 0.97 -4.16 16 2 C -0.14 -4.24 9.33 25.65 0.24 -4.00 16 3 C 0.08 3.18 5.24 85.56 0.45 3.62 16 4 N -0.53 -23.56 4.00 -909.95 -3.64 -27.20 16 5 C 0.22 12.25 4.33 85.56 0.37 12.62 16 6 C -0.52 -31.11 8.23 25.60 0.21 -30.90 16 7 H 0.06 3.48 7.31 -2.91 -0.02 3.46 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.94 -59.33 13.29 21.45 0.28 -59.05 16 10 Si 0.97 46.80 29.54 68.60 2.03 48.83 16 11 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.04 1.34 3.66 85.56 0.31 1.65 16 15 C 0.51 18.90 7.44 87.66 0.65 19.55 16 16 O -0.56 -27.95 14.51 -3.04 -0.04 -28.00 16 17 N -0.62 -16.47 3.01 -818.04 -2.46 -18.94 16 18 C 0.12 3.04 6.60 86.35 0.57 3.61 16 19 C 0.07 1.59 4.83 86.38 0.42 2.00 16 20 N -0.46 -8.66 4.66 -700.58 -3.26 -11.92 16 21 C 0.25 4.83 6.40 133.04 0.85 5.68 16 22 C 0.04 0.65 10.33 84.94 0.88 1.52 16 23 N -0.44 -7.47 10.49 -194.67 -2.04 -9.51 16 24 C 0.02 0.20 11.21 84.61 0.95 1.15 16 25 C 0.08 1.11 11.21 84.61 0.95 2.06 16 26 N -0.51 -10.71 8.85 -192.64 -1.71 -12.41 16 27 C 0.04 0.64 5.42 86.37 0.47 1.11 16 28 C 0.11 1.71 6.47 86.34 0.56 2.27 16 29 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.08 2.49 7.84 -2.91 -0.02 2.47 16 31 H 0.13 2.95 7.28 -2.91 -0.02 2.93 16 32 H 0.06 2.77 6.23 -2.39 -0.01 2.75 16 33 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 34 H 0.00 0.04 6.60 -2.39 -0.02 0.02 16 35 H -0.04 -2.17 8.12 -2.39 -0.02 -2.19 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.06 2.03 7.70 -2.38 -0.02 2.01 16 38 H 0.13 3.15 6.47 -2.39 -0.02 3.13 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.30 7.06 -2.39 -0.02 2.29 16 41 H 0.10 2.27 7.66 -2.38 -0.02 2.25 16 42 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.19 1.90 7.15 -2.91 -0.02 1.88 16 44 H 0.20 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 46 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.13 1.06 6.65 -2.39 -0.02 1.04 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.11 1.41 6.04 -2.39 -0.01 1.40 16 Total: -1.00 -85.82 395.30 -0.59 -86.42 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.95 Total: 13.59 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 9.31 Total: 18.20 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -12.83 Total: -139.04 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -85.82 -0.59 -86.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428884179.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.370 kcal (2) G-P(sol) polarization free energy of solvation -85.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds