Wall clock time and date at job start Wed Apr 1 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99916 * 2 1 4 4 C 1.37998 * 111.00072 * 123.95961 * 2 1 3 5 5 N 1.32941 * 120.82459 * 0.02562 * 4 2 1 6 6 C 1.32038 * 121.12494 * 179.97438 * 5 4 2 7 7 N 1.31584 * 122.73040 * 0.02836 * 6 5 4 8 8 C 1.33164 * 120.76997 * 359.95138 * 7 6 5 9 9 C 1.40897 * 120.82156 * 179.97438 * 4 2 1 10 10 C 1.41018 * 134.46990 * 359.97438 * 9 4 2 11 11 C 1.36087 * 107.56210 * 180.02562 * 10 9 4 12 12 C 1.46846 * 125.49851 * 179.97438 * 11 10 9 13 13 O 1.21672 * 120.00199 * 185.75946 * 12 11 10 14 14 N 1.34780 * 120.00105 * 5.75010 * 12 11 10 15 15 C 1.46490 * 120.00110 * 185.14376 * 14 12 11 16 16 C 1.53000 * 109.47426 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47231 * 300.00180 * 16 15 14 18 18 C 1.53002 * 109.46912 * 59.99610 * 16 15 14 19 19 C 1.50701 * 109.47658 * 179.97438 * 16 15 14 20 20 H 1.08000 * 119.99784 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00240 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99585 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00031 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.47348 * 60.00268 * 23 21 19 25 25 H 1.48494 * 109.47113 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47172 * 300.00486 * 23 21 19 27 27 N 1.36601 * 133.95848 * 180.02562 * 8 7 6 28 28 C 1.46500 * 125.55520 * 0.02562 * 27 8 7 29 29 H 1.09002 * 109.46811 * 296.04348 * 1 2 3 30 30 H 1.08997 * 109.47735 * 56.04134 * 1 2 3 31 31 H 1.08996 * 109.47508 * 176.04816 * 1 2 3 32 32 H 1.09003 * 109.46881 * 183.95267 * 3 2 1 33 33 H 1.08997 * 109.47096 * 303.95673 * 3 2 1 34 34 H 1.08998 * 109.46811 * 63.96176 * 3 2 1 35 35 H 1.08006 * 118.63630 * 179.97438 * 6 5 4 36 36 H 1.07997 * 126.21379 * 359.75559 * 10 9 4 37 37 H 0.97004 * 119.99917 * 5.14934 * 14 12 11 38 38 H 1.09004 * 109.47229 * 300.00065 * 15 14 12 39 39 H 1.09001 * 109.47649 * 60.00453 * 15 14 12 40 40 H 1.09005 * 109.47357 * 59.99558 * 17 16 15 41 41 H 1.09000 * 109.47590 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.46898 * 299.99994 * 17 16 15 43 43 H 1.09004 * 109.47107 * 60.00698 * 18 16 15 44 44 H 1.09009 * 109.46824 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.47648 * 300.00612 * 18 16 15 46 46 H 0.97006 * 119.99704 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47315 * 86.06543 * 28 27 8 48 48 H 1.09005 * 109.46975 * 206.06611 * 28 27 8 49 49 H 1.08998 * 109.47264 * 326.06392 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9636 -0.7197 1.0686 5 7 1.1419 -1.3039 1.9351 6 6 1.6086 -1.9943 2.9593 7 7 2.8956 -2.1470 3.1870 8 6 3.8004 -1.6012 2.3767 9 6 3.3519 -0.8544 1.2676 10 6 4.4969 -0.3955 0.5843 11 6 5.5876 -0.8506 1.2590 12 6 6.9860 -0.6016 0.8863 13 8 7.8853 -1.1437 1.5010 14 7 7.2734 0.2272 -0.1370 15 6 8.6598 0.3886 -0.5817 16 6 8.7096 1.3778 -1.7478 17 6 7.8615 0.8455 -2.9048 18 6 8.1592 2.7308 -1.2926 19 6 10.1359 1.5443 -2.2050 20 1 10.9277 0.9987 -1.7132 21 6 10.4299 2.3923 -3.2517 22 7 9.4655 3.0562 -3.8508 23 14 12.1977 2.5981 -3.8187 24 1 12.7321 1.2847 -4.2602 25 1 12.2458 3.5573 -4.9512 26 1 13.0207 3.1152 -2.6960 27 7 5.1661 -1.5857 2.3538 28 6 6.0419 -2.2422 3.3275 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7045 1.8722 0.9234 35 1 0.9049 -2.4519 3.6388 36 1 4.5065 0.2042 -0.3138 37 1 6.5622 0.7170 -0.5789 38 1 9.2639 0.7683 0.2424 39 1 9.0521 -0.5754 -0.9057 40 1 6.8299 0.7254 -2.5739 41 1 7.8966 1.5504 -3.7354 42 1 8.2536 -0.1185 -3.2290 43 1 8.7633 3.1102 -0.4684 44 1 8.1942 3.4355 -2.1236 45 1 7.1276 2.6108 -0.9617 46 1 9.6723 3.6525 -4.5874 47 1 6.2026 -3.2786 3.0309 48 1 6.9991 -1.7221 3.3639 49 1 5.5756 -2.2143 4.3124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:11 Heat of formation + Delta-G solvation = 67.249255 kcal Electronic energy + Delta-G solvation = -30735.803034 eV Core-core repulsion = 26699.476630 eV Total energy + Delta-G solvation = -4036.326404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34915 -39.95546 -38.70760 -37.54110 -36.42885 -33.87424 -33.00918 -32.51083 -31.09506 -29.69930 -28.29043 -27.04798 -26.07254 -25.79149 -25.51467 -24.97287 -23.59652 -22.54065 -21.33757 -19.95844 -18.98913 -18.45535 -17.71153 -16.80984 -16.36149 -16.30703 -15.77825 -15.47204 -15.25511 -14.85105 -14.74093 -14.64354 -14.51874 -14.07920 -13.88984 -13.71155 -13.45265 -12.96051 -12.92426 -12.66742 -12.61516 -12.29727 -12.20233 -12.11234 -11.89011 -11.46307 -11.28961 -11.25180 -11.00996 -10.90318 -10.77809 -10.45608 -10.26390 -9.87225 -9.71123 -9.42357 -9.40708 -9.39566 -9.07936 -8.87130 -8.63036 -8.41345 -7.99578 -6.07433 -4.17830 0.38797 1.19158 1.88802 2.11817 3.12850 3.26844 3.31595 3.34436 3.37951 3.54373 3.71589 3.98575 4.11362 4.35460 4.47210 4.54128 4.77861 4.91556 4.97568 5.00711 5.18875 5.19648 5.22601 5.28006 5.34437 5.42199 5.55585 5.60488 5.65497 5.86607 5.91341 6.09622 6.20401 6.21190 6.41609 6.47804 6.62666 6.69294 6.75136 6.79172 6.84522 6.86786 6.94382 7.09502 7.27723 7.48975 7.63489 7.81318 7.94656 8.05779 8.07258 8.29681 8.40724 8.82210 9.48341 10.93994 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.002706 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.050790 B =10345.057590 C =11864.752468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.476 5.476 3 C 0.023 3.977 4 C 0.420 3.580 5 N -0.584 5.584 6 C 0.344 3.656 7 N -0.549 5.549 8 C 0.331 3.669 9 C -0.222 4.222 10 C -0.112 4.112 11 C 0.033 3.967 12 C 0.573 3.427 13 O -0.546 6.546 14 N -0.696 5.696 15 C 0.132 3.868 16 C 0.057 3.943 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.508 4.508 20 H 0.057 0.943 21 C 0.068 3.932 22 N -0.885 5.885 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 N -0.427 5.427 28 C 0.075 3.925 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.199 0.801 36 H 0.161 0.839 37 H 0.401 0.599 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.007 0.993 41 H 0.087 0.913 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.006 0.994 46 H 0.261 0.739 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.364 -4.714 9.543 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.192 5.192 3 C -0.123 4.123 4 C 0.172 3.828 5 N -0.308 5.308 6 C 0.052 3.948 7 N -0.271 5.271 8 C 0.091 3.909 9 C -0.234 4.234 10 C -0.139 4.139 11 C -0.077 4.077 12 C 0.358 3.642 13 O -0.426 6.426 14 N -0.346 5.346 15 C 0.011 3.989 16 C 0.056 3.944 17 C -0.190 4.190 18 C -0.190 4.190 19 C -0.547 4.547 20 H 0.076 0.924 21 C -0.134 4.134 22 N -0.523 5.523 23 Si 0.722 3.278 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 N -0.110 5.110 28 C -0.065 4.065 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.215 0.785 36 H 0.178 0.822 37 H 0.238 0.762 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.025 0.975 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.025 0.975 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.127 0.873 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.837 -5.723 10.185 20.493 hybrid contribution 0.884 0.801 -0.469 1.282 sum -15.953 -4.922 9.717 19.316 Atomic orbital electron populations 1.22330 0.83620 1.03888 1.01435 1.58533 1.11175 1.14683 1.34788 1.22691 1.02550 0.84719 1.02323 1.19611 0.87479 0.90036 0.85690 1.68379 1.38841 1.17402 1.06133 1.24410 0.88299 0.90414 0.91682 1.67322 1.02042 1.25986 1.31709 1.18213 0.84837 0.95358 0.92503 1.18876 0.93644 1.09496 1.01399 1.20850 0.88982 1.03188 1.00893 1.20190 0.94997 1.01340 0.91157 1.16965 0.85398 0.80478 0.81362 1.90771 1.47505 1.51328 1.52979 1.46059 1.12335 1.43352 1.32857 1.21867 0.78317 1.00570 0.98194 1.18364 0.96276 0.90335 0.89394 1.21851 0.94673 1.00519 1.01958 1.21850 0.95078 1.00871 1.01172 1.20919 0.91515 1.25879 1.16387 0.92432 1.24864 0.97161 0.95290 0.96070 1.69786 1.31235 1.28091 1.23225 0.86626 0.84995 0.77976 0.78225 1.20270 1.21303 1.20272 1.43658 1.02732 1.42059 1.22506 1.22276 0.95097 0.98579 0.90583 0.93324 0.90732 0.90161 0.89421 0.89285 0.93831 0.78453 0.82175 0.76229 0.92135 0.92235 0.97450 0.89457 0.95320 0.95342 0.89456 0.97502 0.92874 0.90680 0.87329 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 8.77 60.07 0.53 0.81 16 2 N -0.48 -4.91 5.04 -188.56 -0.95 -5.86 16 3 C 0.02 0.19 9.28 60.07 0.56 0.75 16 4 C 0.42 5.18 6.43 -154.86 -1.00 4.19 16 5 N -0.58 -6.91 8.88 -13.61 -0.12 -7.03 16 6 C 0.34 3.81 12.23 -92.12 -1.13 2.69 16 7 N -0.55 -7.27 10.47 -13.86 -0.15 -7.42 16 8 C 0.33 4.74 7.95 -155.93 -1.24 3.50 16 9 C -0.22 -3.00 5.75 -106.78 -0.61 -3.62 16 10 C -0.11 -1.45 8.98 -39.30 -0.35 -1.80 16 11 C 0.03 0.49 6.82 -82.17 -0.56 -0.07 16 12 C 0.57 9.60 7.77 -12.78 -0.10 9.50 16 13 O -0.55 -10.46 14.57 5.21 0.08 -10.38 16 14 N -0.70 -11.59 4.93 -61.57 -0.30 -11.89 16 15 C 0.13 2.62 4.51 -4.05 -0.02 2.60 16 16 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 17 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 18 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 19 C -0.51 -12.77 8.01 -34.44 -0.28 -13.05 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.89 -22.76 9.35 55.43 0.52 -22.25 16 23 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 N -0.43 -6.10 3.21 -119.55 -0.38 -6.48 16 28 C 0.07 0.91 10.61 59.85 0.64 1.55 16 29 H 0.05 0.40 7.97 -51.93 -0.41 -0.02 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 0.70 7.97 -51.93 -0.41 0.29 16 32 H 0.09 0.76 5.14 -51.93 -0.27 0.49 16 33 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.16 1.74 6.12 -52.49 -0.32 1.42 16 37 H 0.40 5.98 5.01 -40.82 -0.20 5.77 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 41 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 2.07 6.07 -51.92 -0.32 1.75 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.11 1.43 6.17 -51.93 -0.32 1.11 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -29.30 387.80 -10.67 -39.97 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.05 Total: 5.53 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -3.13 Total: 4.81 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -1.38 Total: -60.92 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.30 -10.67 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.223 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds