Wall clock time and date at job start Wed Apr 1 2020 03:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99916 * 2 1 4 4 C 1.37998 * 111.00072 * 123.95961 * 2 1 3 5 5 N 1.32941 * 120.82459 * 0.02562 * 4 2 1 6 6 C 1.32038 * 121.12494 * 179.97438 * 5 4 2 7 7 N 1.31584 * 122.73040 * 0.02836 * 6 5 4 8 8 C 1.33164 * 120.76997 * 359.95138 * 7 6 5 9 9 C 1.40897 * 120.82156 * 179.97438 * 4 2 1 10 10 C 1.41018 * 134.46990 * 359.97438 * 9 4 2 11 11 C 1.36087 * 107.56210 * 180.02562 * 10 9 4 12 12 C 1.46846 * 125.49851 * 179.97438 * 11 10 9 13 13 O 1.21672 * 120.00199 * 185.75946 * 12 11 10 14 14 N 1.34780 * 120.00105 * 5.75010 * 12 11 10 15 15 C 1.46490 * 120.00110 * 185.14376 * 14 12 11 16 16 C 1.53000 * 109.47426 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47231 * 300.00180 * 16 15 14 18 18 C 1.53002 * 109.46912 * 59.99610 * 16 15 14 19 19 C 1.50701 * 109.47658 * 179.97438 * 16 15 14 20 20 H 1.08000 * 119.99784 * 0.02562 * 19 16 15 21 21 C 1.37879 * 120.00240 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99585 * 0.02562 * 21 19 16 23 23 Si 1.86794 * 120.00031 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.47348 * 60.00268 * 23 21 19 25 25 H 1.48494 * 109.47113 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47172 * 300.00486 * 23 21 19 27 27 N 1.36601 * 133.95848 * 180.02562 * 8 7 6 28 28 C 1.46500 * 125.55520 * 0.02562 * 27 8 7 29 29 H 1.09002 * 109.46811 * 296.04348 * 1 2 3 30 30 H 1.08997 * 109.47735 * 56.04134 * 1 2 3 31 31 H 1.08996 * 109.47508 * 176.04816 * 1 2 3 32 32 H 1.09003 * 109.46881 * 183.95267 * 3 2 1 33 33 H 1.08997 * 109.47096 * 303.95673 * 3 2 1 34 34 H 1.08998 * 109.46811 * 63.96176 * 3 2 1 35 35 H 1.08006 * 118.63630 * 179.97438 * 6 5 4 36 36 H 1.07997 * 126.21379 * 359.75559 * 10 9 4 37 37 H 0.97004 * 119.99917 * 5.14934 * 14 12 11 38 38 H 1.09004 * 109.47229 * 300.00065 * 15 14 12 39 39 H 1.09001 * 109.47649 * 60.00453 * 15 14 12 40 40 H 1.09005 * 109.47357 * 59.99558 * 17 16 15 41 41 H 1.09000 * 109.47590 * 179.97438 * 17 16 15 42 42 H 1.09000 * 109.46898 * 299.99994 * 17 16 15 43 43 H 1.09004 * 109.47107 * 60.00698 * 18 16 15 44 44 H 1.09009 * 109.46824 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.47648 * 300.00612 * 18 16 15 46 46 H 0.97006 * 119.99704 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47315 * 86.06543 * 28 27 8 48 48 H 1.09005 * 109.46975 * 206.06611 * 28 27 8 49 49 H 1.08998 * 109.47264 * 326.06392 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9636 -0.7197 1.0686 5 7 1.1419 -1.3039 1.9351 6 6 1.6086 -1.9943 2.9593 7 7 2.8956 -2.1470 3.1870 8 6 3.8004 -1.6012 2.3767 9 6 3.3519 -0.8544 1.2676 10 6 4.4969 -0.3955 0.5843 11 6 5.5876 -0.8506 1.2590 12 6 6.9860 -0.6016 0.8863 13 8 7.8853 -1.1437 1.5010 14 7 7.2734 0.2272 -0.1370 15 6 8.6598 0.3886 -0.5817 16 6 8.7096 1.3778 -1.7478 17 6 7.8615 0.8455 -2.9048 18 6 8.1592 2.7308 -1.2926 19 6 10.1359 1.5443 -2.2050 20 1 10.9277 0.9987 -1.7132 21 6 10.4299 2.3923 -3.2517 22 7 9.4655 3.0562 -3.8508 23 14 12.1977 2.5981 -3.8187 24 1 12.7321 1.2847 -4.2602 25 1 12.2458 3.5573 -4.9512 26 1 13.0207 3.1152 -2.6960 27 7 5.1661 -1.5857 2.3538 28 6 6.0419 -2.2422 3.3275 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7045 1.8722 0.9234 35 1 0.9049 -2.4519 3.6388 36 1 4.5065 0.2042 -0.3138 37 1 6.5622 0.7170 -0.5789 38 1 9.2639 0.7683 0.2424 39 1 9.0521 -0.5754 -0.9057 40 1 6.8299 0.7254 -2.5739 41 1 7.8966 1.5504 -3.7354 42 1 8.2536 -0.1185 -3.2290 43 1 8.7633 3.1102 -0.4684 44 1 8.1942 3.4355 -2.1236 45 1 7.1276 2.6108 -0.9617 46 1 9.6723 3.6525 -4.5874 47 1 6.2026 -3.2786 3.0309 48 1 6.9991 -1.7221 3.3639 49 1 5.5756 -2.2143 4.3124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:10 Heat of formation + Delta-G solvation = 51.583475 kcal Electronic energy + Delta-G solvation = -30736.482353 eV Core-core repulsion = 26699.476630 eV Total energy + Delta-G solvation = -4037.005723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.32753 -41.09232 -39.85549 -38.41806 -38.03558 -35.29700 -34.18475 -33.44377 -32.78343 -30.78141 -29.01525 -28.05973 -27.51779 -27.40368 -27.04261 -26.19826 -24.68767 -23.50032 -22.41036 -21.11375 -20.64158 -19.54229 -18.75743 -17.93110 -17.69512 -17.33179 -17.31339 -16.58077 -16.43090 -16.26603 -15.91458 -15.74413 -15.56600 -14.99349 -14.93822 -14.80724 -14.69814 -14.55781 -14.43189 -13.99547 -13.49645 -13.26174 -13.19118 -13.06766 -13.05873 -12.93495 -12.65683 -12.61605 -12.59402 -12.22215 -12.17252 -12.11140 -11.92677 -11.45414 -11.32691 -11.07519 -10.68279 -10.38705 -10.32915 -10.31812 -10.05581 -9.99156 -8.96934 -8.00002 -6.15157 -0.58514 0.23454 0.82247 1.09149 1.45779 1.47883 1.53508 2.14374 2.21731 2.37284 2.50147 2.78999 3.14953 3.18722 3.24201 3.42868 3.64369 3.77880 4.01831 4.23146 4.28414 4.34133 4.38904 4.41824 4.47760 4.52729 4.60863 4.62688 4.69497 4.74045 4.91378 4.94538 5.00258 5.01770 5.09640 5.11685 5.15237 5.23674 5.31319 5.42721 5.50444 5.55919 5.70679 5.71546 5.76802 5.94253 6.17027 6.19510 6.24135 6.45778 6.49550 6.88441 7.07173 7.16522 7.52475 8.98628 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.002706 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.050790 B =10345.057590 C =11864.752468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.482 5.482 3 C 0.020 3.980 4 C 0.422 3.578 5 N -0.589 5.589 6 C 0.350 3.650 7 N -0.568 5.568 8 C 0.319 3.681 9 C -0.242 4.242 10 C -0.088 4.088 11 C 0.006 3.994 12 C 0.578 3.422 13 O -0.575 6.575 14 N -0.689 5.689 15 C 0.149 3.851 16 C 0.053 3.947 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.529 4.529 20 H 0.046 0.954 21 C 0.031 3.969 22 N -0.897 5.897 23 Si 0.941 3.059 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.278 1.278 27 N -0.434 5.434 28 C 0.077 3.923 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.236 0.764 36 H 0.182 0.818 37 H 0.412 0.588 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.260 0.740 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.652 -4.541 9.599 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.198 5.198 3 C -0.125 4.125 4 C 0.173 3.827 5 N -0.313 5.313 6 C 0.059 3.941 7 N -0.291 5.291 8 C 0.079 3.921 9 C -0.254 4.254 10 C -0.115 4.115 11 C -0.103 4.103 12 C 0.365 3.635 13 O -0.457 6.457 14 N -0.340 5.340 15 C 0.026 3.974 16 C 0.052 3.948 17 C -0.181 4.181 18 C -0.181 4.181 19 C -0.568 4.568 20 H 0.064 0.936 21 C -0.169 4.169 22 N -0.536 5.536 23 Si 0.768 3.232 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.203 1.203 27 N -0.117 5.117 28 C -0.063 4.063 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.199 0.801 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.143 -5.533 10.227 22.398 hybrid contribution 1.436 0.724 -0.470 1.675 sum -17.708 -4.809 9.757 20.782 Atomic orbital electron populations 1.22396 0.82291 1.03908 1.02500 1.58577 1.12376 1.15399 1.33406 1.22800 1.02436 0.83739 1.03484 1.19879 0.87183 0.89782 0.85867 1.68505 1.38594 1.17839 1.06392 1.25238 0.88238 0.89034 0.91588 1.67415 1.02624 1.26943 1.32085 1.18478 0.84897 0.95629 0.93075 1.19026 0.94348 1.10343 1.01701 1.21085 0.88213 1.01602 1.00605 1.19832 0.93980 1.03794 0.92696 1.17148 0.86125 0.79585 0.80616 1.90757 1.48708 1.52337 1.53895 1.45780 1.11239 1.43823 1.33158 1.21418 0.79885 0.99162 0.96934 1.18348 0.94884 0.91264 0.90259 1.21699 0.96457 0.99120 1.00814 1.21697 0.96889 0.99636 0.99836 1.21244 0.93117 1.25837 1.16602 0.93601 1.25396 0.99836 0.95342 0.96342 1.69890 1.32157 1.28233 1.23289 0.85878 0.81850 0.77693 0.77731 1.20380 1.20967 1.20345 1.43763 1.03105 1.42218 1.22639 1.22280 0.94492 0.98394 0.91134 0.93251 0.88452 0.90882 0.89817 0.87012 0.93635 0.74850 0.80137 0.75017 0.93502 0.93543 0.94158 0.91816 0.96263 0.96265 0.91802 0.94203 0.93035 0.90328 0.88647 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 8.77 127.69 1.12 1.60 16 2 N -0.48 -8.63 5.04 -750.47 -3.78 -12.41 16 3 C 0.02 0.28 9.28 127.69 1.18 1.46 16 4 C 0.42 9.50 6.43 133.68 0.86 10.36 16 5 N -0.59 -12.58 8.88 -196.98 -1.75 -14.33 16 6 C 0.35 6.96 12.23 180.87 2.21 9.17 16 7 N -0.57 -14.16 10.47 -197.78 -2.07 -16.23 16 8 C 0.32 8.78 7.95 134.10 1.07 9.84 16 9 C -0.24 -6.14 5.75 -21.26 -0.12 -6.26 16 10 C -0.09 -2.12 8.98 22.45 0.20 -1.92 16 11 C 0.01 0.18 6.82 39.85 0.27 0.45 16 12 C 0.58 19.18 7.77 86.49 0.67 19.85 16 13 O -0.58 -22.34 14.57 -4.26 -0.06 -22.41 16 14 N -0.69 -22.28 4.93 -466.94 -2.30 -24.58 16 15 C 0.15 5.91 4.51 86.38 0.39 6.30 16 16 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 17 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 18 C -0.12 -5.11 8.08 71.98 0.58 -4.53 16 19 C -0.53 -26.87 8.01 25.60 0.21 -26.66 16 20 H 0.05 2.37 7.74 -2.91 -0.02 2.35 16 21 C 0.03 1.57 5.15 84.65 0.44 2.01 16 22 N -0.90 -46.21 9.35 21.45 0.20 -46.01 16 23 Si 0.94 41.49 29.54 68.60 2.03 43.52 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 N -0.43 -12.19 3.21 -532.14 -1.71 -13.89 16 28 C 0.08 1.88 10.61 127.77 1.36 3.23 16 29 H 0.05 0.68 7.97 -2.39 -0.02 0.66 16 30 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.07 1.11 7.97 -2.39 -0.02 1.09 16 32 H 0.08 1.21 5.14 -2.39 -0.01 1.20 16 33 H 0.11 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.18 3.42 6.12 -2.91 -0.02 3.41 16 37 H 0.41 11.37 5.01 -92.70 -0.46 10.90 16 38 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 41 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.06 2.99 6.07 -2.38 -0.01 2.97 16 45 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 46 H 0.26 13.00 8.31 -92.70 -0.77 12.23 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.09 2.58 6.17 -2.38 -0.01 2.56 16 49 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.12 387.80 2.07 -61.05 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.52 Total: 22.67 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 10.99 Total: 22.62 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -11.40 Total: -127.45 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -63.12 2.07 -61.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.634 kcal (2) G-P(sol) polarization free energy of solvation -63.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds