Wall clock time and date at job start Wed Apr 1 2020 04:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50701 * 126.03424 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47255 * 269.97378 * 8 7 5 10 10 O 1.21294 * 119.99686 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00277 * 179.97438 * 9 8 7 12 12 C 1.39476 * 120.00171 * 180.02562 * 11 9 8 13 13 C 1.36112 * 126.21530 * 359.69015 * 12 11 9 14 14 C 1.39755 * 107.82597 * 179.84963 * 13 12 11 15 15 C 1.50697 * 125.83752 * 180.15054 * 14 13 12 16 16 N 1.30850 * 108.32269 * 0.42000 * 14 13 12 17 17 N 1.35258 * 126.21429 * 180.02562 * 12 11 9 18 18 C 1.46501 * 126.04810 * 359.95548 * 17 12 11 19 19 C 1.50701 * 109.46558 * 90.00861 * 18 17 12 20 20 H 1.07993 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99897 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00446 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46979 * 89.99905 * 23 21 19 25 25 H 1.48499 * 109.47289 * 210.00388 * 23 21 19 26 26 H 1.48500 * 109.46891 * 330.00200 * 23 21 19 27 27 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 28 28 C 1.50703 * 126.12821 * 0.04077 * 27 3 2 29 29 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 31 31 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 33 33 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 34 34 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 35 35 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 36 36 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 37 37 H 1.08997 * 109.47299 * 29.97721 * 8 7 5 38 38 H 1.09002 * 109.46968 * 149.98305 * 8 7 5 39 39 H 0.97000 * 119.99316 * 0.02562 * 11 9 8 40 40 H 1.07997 * 126.08424 * 359.97438 * 13 12 11 41 41 H 1.09004 * 109.47032 * 270.29744 * 15 14 13 42 42 H 1.08996 * 109.47137 * 30.29204 * 15 14 13 43 43 H 1.08995 * 109.47127 * 150.29634 * 15 14 13 44 44 H 1.09005 * 109.47041 * 210.00505 * 18 17 12 45 45 H 1.08999 * 109.47340 * 330.00519 * 18 17 12 46 46 H 0.97001 * 119.99871 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47152 * 269.68605 * 28 27 3 48 48 H 1.09001 * 109.46980 * 149.68706 * 28 27 3 49 49 H 1.09004 * 109.47113 * 29.68687 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1296 4.4916 1.5453 9 6 4.6051 4.3965 1.8368 10 8 5.2566 3.4831 1.3759 11 7 5.2010 5.3268 2.6088 12 6 6.5667 5.2390 2.8781 13 6 7.4132 4.2699 2.4343 14 6 8.6887 4.5571 2.9280 15 6 9.9341 3.7457 2.6800 16 7 8.6154 5.6477 3.6473 17 7 7.2892 6.0980 3.6329 18 6 6.7757 7.2892 4.3137 19 6 6.3211 6.9176 5.7017 20 1 6.4058 5.8963 6.0423 21 6 5.7961 7.8814 6.5362 22 7 5.3989 7.5570 7.7473 23 14 5.6489 9.6478 5.9468 24 1 4.3279 9.8445 5.2975 25 1 5.7729 10.5683 7.1055 26 1 6.7288 9.9349 4.9687 27 6 2.2828 2.1298 1.0913 28 6 2.1297 1.6943 2.5258 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1851 4.4056 -1.8400 35 1 2.5554 4.4296 -2.5553 36 1 2.9120 5.4204 -1.1202 37 1 2.9200 5.4315 1.0347 38 1 2.5714 4.4539 2.4808 39 1 4.6799 6.0575 2.9770 40 1 7.1469 3.4299 1.8100 41 1 10.0333 2.9861 3.4554 42 1 9.8650 3.2629 1.7052 43 1 10.8047 4.4012 2.6999 44 1 7.5641 8.0391 4.3782 45 1 5.9340 7.6943 3.7520 46 1 5.0299 8.2352 8.3345 47 1 1.1255 1.9363 2.8738 48 1 2.8630 2.2131 3.1433 49 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570759710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:23 Heat of formation + Delta-G solvation = 109.600714 kcal Electronic energy + Delta-G solvation = -30327.923906 eV Core-core repulsion = 26293.434000 eV Total energy + Delta-G solvation = -4034.489907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55493 -40.79257 -39.00954 -35.23149 -34.67385 -33.70829 -33.10366 -32.14852 -31.70161 -29.78955 -29.32610 -28.11924 -27.38888 -26.31926 -26.04258 -23.25534 -22.52965 -21.55615 -19.93731 -19.59094 -19.47862 -19.05436 -17.20258 -16.94977 -16.65173 -16.41386 -15.44566 -15.31212 -14.95378 -14.74496 -14.46467 -14.15238 -13.85080 -13.73319 -13.43595 -13.39491 -13.25759 -13.15436 -13.05729 -12.69324 -12.63139 -12.56581 -12.36457 -12.29718 -12.13764 -11.91328 -11.87044 -11.79470 -11.71432 -11.56216 -11.12214 -10.82648 -10.49448 -10.42248 -10.20108 -9.90839 -9.75508 -9.45129 -9.07539 -8.86304 -8.32930 -7.91999 -7.43527 -6.33585 -4.37762 1.79597 2.31676 2.36217 2.55397 2.98724 3.06903 3.13605 3.17718 3.19593 3.61063 3.79457 4.14350 4.25375 4.49831 4.65985 4.72912 4.77835 4.88216 4.93150 4.95456 5.07218 5.13880 5.26667 5.31800 5.33063 5.34009 5.36770 5.48558 5.61911 5.64797 5.65044 5.76148 5.83218 5.99170 6.03302 6.05551 6.13219 6.18099 6.26093 6.35794 6.41796 6.64909 6.69788 6.78415 6.98222 7.20840 7.48932 7.62674 7.72165 7.83336 8.21663 8.40485 8.60997 8.73130 9.21360 10.78653 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.002953 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.896587 B = 9478.821707 C =10586.266515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.370 5.370 4 N -0.301 5.301 5 C 0.093 3.907 6 C -0.074 4.074 7 C -0.220 4.220 8 C -0.055 4.055 9 C 0.517 3.483 10 O -0.504 6.504 11 N -0.645 5.645 12 C 0.308 3.692 13 C -0.294 4.294 14 C 0.054 3.946 15 C -0.062 4.062 16 N -0.285 5.285 17 N -0.345 5.345 18 C 0.230 3.770 19 C -0.544 4.544 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.884 5.884 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.105 3.895 28 C -0.096 4.096 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.414 0.586 40 H 0.162 0.838 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.269 0.731 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -10.314 -15.238 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.152 5.152 4 N -0.122 5.122 5 C -0.073 4.073 6 C -0.133 4.133 7 C -0.232 4.232 8 C -0.096 4.096 9 C 0.304 3.696 10 O -0.377 6.377 11 N -0.292 5.292 12 C 0.086 3.914 13 C -0.326 4.326 14 C -0.111 4.111 15 C -0.121 4.121 16 N -0.110 5.110 17 N -0.130 5.130 18 C 0.111 3.889 19 C -0.582 4.582 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.520 5.520 23 Si 0.697 3.303 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.022 4.022 28 C -0.154 4.154 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.250 0.750 40 H 0.179 0.821 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.488 -10.859 -15.640 21.273 hybrid contribution -0.802 1.310 0.551 1.632 sum -10.290 -9.549 -15.089 20.609 Atomic orbital electron populations 1.22181 0.94401 1.02924 1.03203 1.21613 0.95040 0.78194 1.04326 1.48371 1.51927 1.11674 1.03242 1.77263 1.23764 1.03570 1.07649 1.22075 0.97805 0.94202 0.93246 1.20186 1.02070 0.93326 0.97704 1.18899 1.15216 0.96047 0.92994 1.19842 0.91190 0.98080 1.00500 1.20774 0.90040 0.81182 0.77635 1.90634 1.65031 1.32572 1.49437 1.42911 1.06121 1.29606 1.50607 1.17946 0.83263 0.93691 0.96494 1.21267 0.91359 1.04786 1.15204 1.22042 0.96071 0.95315 0.97674 1.20024 0.92542 0.97836 1.01720 1.77350 0.95527 1.14894 1.23230 1.48876 1.04686 1.21789 1.37691 1.19918 0.94646 0.81108 0.93238 1.21196 1.42704 0.98447 0.95899 0.90092 1.24822 0.94352 0.98698 0.94582 1.69875 1.40618 1.34510 1.07040 0.86925 0.79234 0.84827 0.79316 1.19606 1.20405 1.18750 1.20753 0.99256 0.91530 0.90670 1.20504 1.03522 1.02222 0.89142 0.91991 0.91676 0.90612 0.88839 0.89039 0.90313 0.91050 0.90591 0.87863 0.87894 0.74990 0.82087 0.91229 0.91146 0.91544 0.92828 0.94720 0.92053 0.90068 0.89447 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.15 0.38 -0.70 16 2 C 0.13 1.04 6.96 -4.04 -0.03 1.01 16 3 N -0.37 -4.43 3.61 -57.14 -0.21 -4.64 16 4 N -0.30 -4.21 12.58 33.67 0.42 -3.79 16 5 C 0.09 1.23 7.22 -82.40 -0.59 0.63 16 6 C -0.07 -0.77 10.26 36.00 0.37 -0.40 16 7 C -0.22 -2.81 4.59 -105.05 -0.48 -3.30 16 8 C -0.05 -0.62 5.61 -29.03 -0.16 -0.78 16 9 C 0.52 7.93 7.79 -10.98 -0.09 7.84 16 10 O -0.50 -9.27 13.16 5.54 0.07 -9.20 16 11 N -0.64 -10.82 5.42 -11.46 -0.06 -10.89 16 12 C 0.31 6.38 7.66 -153.16 -1.17 5.21 16 13 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 14 C 0.05 1.09 7.21 -82.44 -0.59 0.50 16 15 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 16 N -0.29 -6.59 12.56 33.65 0.42 -6.17 16 17 N -0.35 -7.91 3.60 -61.57 -0.22 -8.13 16 18 C 0.23 5.35 5.07 -5.19 -0.03 5.33 16 19 C -0.54 -14.73 9.94 -34.44 -0.34 -15.07 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 22 N -0.88 -25.44 13.96 55.43 0.77 -24.66 16 23 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 27 C 0.11 1.27 6.93 -82.27 -0.57 0.70 16 28 C -0.10 -0.88 9.73 36.01 0.35 -0.53 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.57 7.04 -51.93 -0.37 0.21 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.64 7.25 -51.93 -0.38 0.26 16 37 H 0.10 0.92 7.25 -51.93 -0.38 0.54 16 38 H 0.10 0.98 7.78 -51.93 -0.40 0.58 16 39 H 0.41 6.17 7.96 -40.82 -0.33 5.85 16 40 H 0.16 3.27 5.83 -52.49 -0.31 2.96 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 45 H 0.04 0.72 6.93 -51.93 -0.36 0.36 16 46 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.91 7.78 -51.93 -0.40 0.50 16 49 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -35.80 407.70 -7.86 -43.66 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.48 Total: 7.53 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -3.06 Total: -4.49 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 1.13 Total: -58.28 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.80 -7.86 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570759710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.265 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds