Wall clock time and date at job start Wed Apr 1 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.46975 * 2 1 4 4 N 1.40080 * 126.03855 * 270.15434 * 3 2 1 5 5 C 1.30836 * 108.20867 * 180.23079 * 4 3 2 6 6 C 1.50695 * 125.90309 * 179.81600 * 5 4 3 7 7 C 1.39880 * 108.19611 * 359.77857 * 5 4 3 8 8 C 1.50701 * 126.03424 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47255 * 269.97378 * 8 7 5 10 10 O 1.21294 * 119.99686 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00277 * 179.97438 * 9 8 7 12 12 C 1.39476 * 120.00171 * 180.02562 * 11 9 8 13 13 C 1.36112 * 126.21530 * 359.69015 * 12 11 9 14 14 C 1.39755 * 107.82597 * 179.84963 * 13 12 11 15 15 C 1.50697 * 125.83752 * 180.15054 * 14 13 12 16 16 N 1.30850 * 108.32269 * 0.42000 * 14 13 12 17 17 N 1.35258 * 126.21429 * 180.02562 * 12 11 9 18 18 C 1.46501 * 126.04810 * 359.95548 * 17 12 11 19 19 C 1.50701 * 109.46558 * 90.00861 * 18 17 12 20 20 H 1.07993 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99502 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99897 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00446 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46979 * 89.99905 * 23 21 19 25 25 H 1.48499 * 109.47289 * 210.00388 * 23 21 19 26 26 H 1.48500 * 109.46891 * 330.00200 * 23 21 19 27 27 C 1.34946 * 126.03491 * 89.99650 * 3 2 1 28 28 C 1.50703 * 126.12821 * 0.04077 * 27 3 2 29 29 H 1.08995 * 109.47583 * 299.99398 * 1 2 3 30 30 H 1.09002 * 109.47268 * 60.00269 * 1 2 3 31 31 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47583 * 240.00602 * 2 1 3 33 33 H 1.09002 * 109.47268 * 119.99731 * 2 1 3 34 34 H 1.09003 * 109.46956 * 269.95831 * 6 5 4 35 35 H 1.08999 * 109.47037 * 29.95728 * 6 5 4 36 36 H 1.09003 * 109.47071 * 149.95864 * 6 5 4 37 37 H 1.08997 * 109.47299 * 29.97721 * 8 7 5 38 38 H 1.09002 * 109.46968 * 149.98305 * 8 7 5 39 39 H 0.97000 * 119.99316 * 0.02562 * 11 9 8 40 40 H 1.07997 * 126.08424 * 359.97438 * 13 12 11 41 41 H 1.09004 * 109.47032 * 270.29744 * 15 14 13 42 42 H 1.08996 * 109.47137 * 30.29204 * 15 14 13 43 43 H 1.08995 * 109.47127 * 150.29634 * 15 14 13 44 44 H 1.09005 * 109.47041 * 210.00505 * 18 17 12 45 45 H 1.08999 * 109.47340 * 330.00519 * 18 17 12 46 46 H 0.97001 * 119.99871 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.47152 * 269.68605 * 28 27 3 48 48 H 1.09001 * 109.46980 * 149.68706 * 28 27 3 49 49 H 1.09004 * 109.47113 * 29.68687 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2901 2.1593 -1.1327 5 6 2.7110 3.3316 -0.7321 6 6 3.1191 4.4760 -1.6236 7 6 2.7158 3.3394 0.6666 8 6 3.1296 4.4916 1.5453 9 6 4.6051 4.3965 1.8368 10 8 5.2566 3.4831 1.3759 11 7 5.2010 5.3268 2.6088 12 6 6.5667 5.2390 2.8781 13 6 7.4132 4.2699 2.4343 14 6 8.6887 4.5571 2.9280 15 6 9.9341 3.7457 2.6800 16 7 8.6154 5.6477 3.6473 17 7 7.2892 6.0980 3.6329 18 6 6.7757 7.2892 4.3137 19 6 6.3211 6.9176 5.7017 20 1 6.4058 5.8963 6.0423 21 6 5.7961 7.8814 6.5362 22 7 5.3989 7.5570 7.7473 23 14 5.6489 9.6478 5.9468 24 1 4.3279 9.8445 5.2975 25 1 5.7729 10.5683 7.1055 26 1 6.7288 9.9349 4.9687 27 6 2.2828 2.1298 1.0913 28 6 2.1297 1.6943 2.5258 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1851 4.4056 -1.8400 35 1 2.5554 4.4296 -2.5553 36 1 2.9120 5.4204 -1.1202 37 1 2.9200 5.4315 1.0347 38 1 2.5714 4.4539 2.4808 39 1 4.6799 6.0575 2.9770 40 1 7.1469 3.4299 1.8100 41 1 10.0333 2.9861 3.4554 42 1 9.8650 3.2629 1.7052 43 1 10.8047 4.4012 2.6999 44 1 7.5641 8.0391 4.3782 45 1 5.9340 7.6943 3.7520 46 1 5.0299 8.2352 8.3345 47 1 1.1255 1.9363 2.8738 48 1 2.8630 2.2131 3.1433 49 1 2.2898 0.6185 2.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570759710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:22 Heat of formation + Delta-G solvation = 86.377485 kcal Electronic energy + Delta-G solvation = -30328.930941 eV Core-core repulsion = 26293.434000 eV Total energy + Delta-G solvation = -4035.496942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55076 -42.23394 -40.35040 -36.23486 -35.95755 -35.47381 -34.02309 -33.92800 -32.47443 -31.17945 -30.55011 -29.45440 -28.17879 -27.99563 -27.00653 -24.43201 -23.90420 -22.86451 -21.28742 -20.94222 -20.39343 -20.18748 -19.23319 -18.43732 -17.74872 -17.50256 -16.72440 -16.55991 -16.22722 -16.00099 -15.58446 -15.46374 -15.15173 -14.83586 -14.75226 -14.35379 -14.20413 -14.18564 -14.13710 -14.03025 -13.85369 -13.77614 -13.48488 -13.28293 -13.14336 -13.01935 -12.94507 -12.87186 -12.65529 -12.53461 -12.50687 -12.15413 -12.08652 -11.83614 -11.71222 -11.46161 -11.38373 -10.88654 -10.84267 -9.96048 -9.58671 -9.23965 -9.02883 -8.39800 -6.52176 0.84282 0.90342 1.30877 1.35670 1.41623 1.50025 1.62196 1.68781 1.78852 2.10355 2.27508 2.36079 2.91864 3.52044 3.71523 3.75482 3.81092 4.01385 4.07586 4.09839 4.20839 4.25029 4.34689 4.35095 4.49259 4.57548 4.61620 4.65409 4.67497 4.72231 4.76025 4.78423 4.83175 4.86815 4.95328 4.96051 4.99664 5.06648 5.15159 5.16600 5.19038 5.21457 5.24418 5.29863 5.78416 5.89663 6.01741 6.18443 6.27985 6.41198 6.52479 6.81579 6.99423 7.10975 7.14384 8.76536 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.002953 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.896587 B = 9478.821707 C =10586.266515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 N -0.373 5.373 4 N -0.335 5.335 5 C 0.078 3.922 6 C -0.074 4.074 7 C -0.243 4.243 8 C -0.044 4.044 9 C 0.520 3.480 10 O -0.535 6.535 11 N -0.641 5.641 12 C 0.308 3.692 13 C -0.310 4.310 14 C 0.059 3.941 15 C -0.061 4.061 16 N -0.331 5.331 17 N -0.367 5.367 18 C 0.238 3.762 19 C -0.552 4.552 20 H 0.022 0.978 21 C 0.026 3.974 22 N -0.934 5.934 23 Si 0.948 3.052 24 H -0.242 1.242 25 H -0.282 1.282 26 H -0.249 1.249 27 C 0.099 3.901 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.423 0.577 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.274 0.726 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -9.540 -16.443 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.155 5.155 4 N -0.157 5.157 5 C -0.087 4.087 6 C -0.132 4.132 7 C -0.254 4.254 8 C -0.085 4.085 9 C 0.309 3.691 10 O -0.410 6.410 11 N -0.290 5.290 12 C 0.086 3.914 13 C -0.342 4.342 14 C -0.106 4.106 15 C -0.120 4.120 16 N -0.155 5.155 17 N -0.152 5.152 18 C 0.119 3.881 19 C -0.590 4.590 20 H 0.041 0.959 21 C -0.174 4.174 22 N -0.572 5.572 23 Si 0.769 3.231 24 H -0.165 1.165 25 H -0.207 1.207 26 H -0.172 1.172 27 C -0.029 4.029 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.261 0.739 40 H 0.181 0.819 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.093 0.907 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.795 -10.109 -16.873 22.437 hybrid contribution -0.400 0.844 0.940 1.325 sum -11.195 -9.265 -15.933 21.565 Atomic orbital electron populations 1.22113 0.93035 1.04273 1.02330 1.21963 0.96175 0.76693 1.05314 1.48715 1.51451 1.12577 1.02765 1.77191 1.25029 1.04377 1.09121 1.22538 0.97555 0.94596 0.94036 1.20266 1.01505 0.93414 0.98014 1.19151 1.16230 0.96954 0.93092 1.19914 0.87791 0.99124 1.01670 1.21613 0.91400 0.79935 0.76148 1.90613 1.66114 1.33754 1.50495 1.43105 1.04639 1.30407 1.50847 1.18312 0.84872 0.92965 0.95294 1.21431 0.91802 1.05067 1.15910 1.22848 0.97705 0.94421 0.95658 1.20213 0.90630 0.97709 1.03412 1.77289 0.96237 1.16702 1.25309 1.48811 1.05152 1.22421 1.38814 1.19754 0.95365 0.81444 0.91576 1.21207 1.43471 0.96024 0.98319 0.95934 1.25806 0.93291 1.04070 0.94278 1.70035 1.41808 1.36590 1.08787 0.85721 0.80937 0.77417 0.79029 1.16537 1.20711 1.17223 1.21237 0.98395 0.91531 0.91753 1.20577 1.04403 1.02952 0.87246 0.91951 0.93338 0.88134 0.88821 0.87103 0.91175 0.90250 0.88584 0.84893 0.85755 0.73928 0.81943 0.90018 0.88763 0.90433 0.93240 0.91305 0.91683 0.87826 0.90740 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.24 71.98 0.74 -1.05 16 2 C 0.12 1.75 6.96 86.38 0.60 2.35 16 3 N -0.37 -8.62 3.61 -334.69 -1.21 -9.83 16 4 N -0.33 -9.30 12.58 -47.38 -0.60 -9.89 16 5 C 0.08 2.02 7.22 43.10 0.31 2.33 16 6 C -0.07 -1.44 10.26 71.23 0.73 -0.71 16 7 C -0.24 -5.90 4.59 -20.14 -0.09 -5.99 16 8 C -0.04 -0.91 5.61 29.10 0.16 -0.75 16 9 C 0.52 15.41 7.79 87.66 0.68 16.09 16 10 O -0.54 -19.56 13.16 -3.07 -0.04 -19.60 16 11 N -0.64 -20.96 5.42 -308.55 -1.67 -22.63 16 12 C 0.31 12.77 7.66 131.32 1.01 13.77 16 13 C -0.31 -12.77 9.58 22.14 0.21 -12.56 16 14 C 0.06 2.38 7.21 43.07 0.31 2.69 16 15 C -0.06 -1.76 10.44 71.24 0.74 -1.02 16 16 N -0.33 -15.49 12.56 -47.45 -0.60 -16.08 16 17 N -0.37 -16.93 3.60 -348.70 -1.26 -18.19 16 18 C 0.24 10.98 5.07 85.63 0.43 11.42 16 19 C -0.55 -30.57 9.94 25.60 0.25 -30.32 16 20 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 21 C 0.03 1.39 5.47 84.65 0.46 1.86 16 22 N -0.93 -54.88 13.96 21.45 0.30 -54.58 16 23 Si 0.95 38.73 27.47 68.60 1.88 40.61 16 24 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.25 -9.54 6.54 99.48 0.65 -8.88 16 27 C 0.10 2.27 6.93 41.40 0.29 2.55 16 28 C -0.09 -1.57 9.73 71.24 0.69 -0.87 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.17 7.04 -2.39 -0.02 1.15 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.42 7.25 -2.39 -0.02 1.40 16 37 H 0.13 1.94 7.25 -2.39 -0.02 1.92 16 38 H 0.12 2.05 7.78 -2.39 -0.02 2.03 16 39 H 0.42 11.96 7.96 -92.71 -0.74 11.22 16 40 H 0.16 6.62 5.83 -2.91 -0.02 6.61 16 41 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 2.31 7.20 -2.38 -0.02 2.29 16 45 H 0.07 2.68 6.93 -2.39 -0.02 2.66 16 46 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.46 7.78 -2.39 -0.02 1.44 16 49 H 0.08 1.16 7.07 -2.38 -0.02 1.14 16 Total: -1.00 -81.64 407.70 4.53 -77.10 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.18 Total: 33.30 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 7.54 Total: -0.21 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -5.03 Total: -131.21 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.88 Total: 40.61 kcal Total: -81.64 4.53 -77.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570759710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.482 kcal (2) G-P(sol) polarization free energy of solvation -81.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds