Wall clock time and date at job start Wed Apr 1 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47492 * 2 1 4 4 N 1.40070 * 126.04537 * 275.50253 * 3 2 1 5 5 C 1.30848 * 108.36886 * 180.25487 * 4 3 2 6 6 C 1.39750 * 108.32920 * 359.78353 * 5 4 3 7 7 C 1.35256 * 126.04682 * 95.37997 * 3 2 1 8 8 N 1.39478 * 126.21962 * 0.02562 * 7 3 2 9 9 C 1.45749 * 117.94850 * 264.74459 * 8 7 3 10 10 C 1.52919 * 110.48665 * 160.92211 * 9 8 7 11 11 C 1.53342 * 108.67748 * 50.75157 * 10 9 8 12 12 C 1.53074 * 108.42650 * 292.47149 * 11 10 9 13 13 H 1.08997 * 109.39616 * 288.85411 * 12 11 10 14 14 N 1.46898 * 109.40034 * 169.02669 * 12 11 10 15 15 C 1.46901 * 110.99881 * 155.00041 * 14 12 11 16 16 C 1.52991 * 109.47315 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47298 * 55.00093 * 16 15 14 18 18 C 1.47198 * 109.47138 * 294.99955 * 16 15 14 19 19 N 7.93622 * 145.80431 * 62.10269 * 2 1 3 20 20 C 1.53007 * 109.47237 * 174.99609 * 16 15 14 21 21 C 1.50699 * 109.46886 * 184.99856 * 20 16 15 22 22 H 1.08001 * 120.00483 * 0.02562 * 21 20 16 23 23 C 1.37886 * 119.99756 * 179.97438 * 21 20 16 24 24 N 1.31510 * 120.00071 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99769 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47096 * 269.99377 * 25 23 21 27 27 H 1.48500 * 109.47200 * 29.99316 * 25 23 21 28 28 H 1.48499 * 109.47258 * 149.99765 * 25 23 21 29 29 C 1.33357 * 117.94348 * 84.73857 * 8 7 3 30 30 O 1.21289 * 118.24464 * 2.22901 * 29 8 7 31 31 H 1.09004 * 109.46831 * 300.00532 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.99505 * 1 2 3 33 33 H 1.08999 * 109.47733 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46831 * 239.99468 * 2 1 3 35 35 H 1.09008 * 109.46943 * 120.00511 * 2 1 3 36 36 H 1.08006 * 125.83321 * 179.76596 * 5 4 3 37 37 H 1.08006 * 126.09019 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.29916 * 40.60945 * 9 8 7 39 39 H 1.09001 * 109.29951 * 281.22971 * 9 8 7 40 40 H 1.09001 * 109.60310 * 290.99252 * 10 9 8 41 41 H 1.09005 * 109.60033 * 170.50811 * 10 9 8 42 42 H 1.08997 * 109.67807 * 172.73044 * 11 10 9 43 43 H 1.09003 * 109.69924 * 52.21501 * 11 10 9 44 44 H 1.00899 * 110.99588 * 278.94643 * 14 12 11 45 45 H 1.09001 * 109.47252 * 59.99657 * 15 14 12 46 46 H 1.09007 * 109.46900 * 299.99651 * 15 14 12 47 47 H 1.08998 * 109.46503 * 65.00345 * 20 16 15 48 48 H 1.08995 * 109.46885 * 304.99957 * 20 16 15 49 49 H 0.96996 * 120.00203 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1908 2.1944 -1.1273 5 6 2.6475 3.3552 -0.7324 6 6 2.7780 3.3260 0.6587 7 6 2.3804 2.0973 1.0888 8 7 2.3567 1.6551 2.4114 9 6 1.1821 1.9684 3.2154 10 6 1.1028 1.0431 4.4303 11 6 2.4562 1.0618 5.1510 12 6 3.4958 0.3967 4.2454 13 1 3.3057 -0.6757 4.2029 14 7 4.8396 0.6329 4.7898 15 6 5.7752 -0.4125 4.3544 16 6 7.1609 -0.1327 4.9393 17 1 7.0860 -0.0402 6.0228 18 6 7.6876 1.1208 4.3752 19 7 8.0942 2.0869 3.9420 20 6 8.1044 -1.2854 4.5899 21 6 9.4329 -1.0703 5.2679 22 1 9.5887 -0.1988 5.8865 23 6 10.4493 -1.9866 5.0993 24 7 11.6089 -1.7987 5.6905 25 14 10.1797 -3.4943 4.0299 26 1 9.6528 -4.6046 4.8635 27 1 9.2027 -3.1730 2.9586 28 1 11.4690 -3.9039 3.4175 29 6 3.4101 0.9720 2.8609 30 8 4.3493 0.8066 2.1114 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8900 36 1 2.8837 4.1927 -1.3722 37 1 3.1309 4.1346 1.2818 38 1 0.2858 1.8431 2.6079 39 1 1.2426 3.0028 3.5538 40 1 0.8768 0.0283 4.1029 41 1 0.3234 1.3938 5.1068 42 1 2.3803 0.5112 6.0886 43 1 2.7507 2.0916 5.3529 44 1 5.1770 1.5490 4.5349 45 1 5.8347 -0.4166 3.2660 46 1 5.4228 -1.3835 4.7027 47 1 8.2491 -1.3217 3.5102 48 1 7.6708 -2.2257 4.9303 49 1 12.3241 -2.4431 5.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570897902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:31 Heat of formation + Delta-G solvation = 75.893364 kcal Electronic energy + Delta-G solvation = -30750.915924 eV Core-core repulsion = 26714.964357 eV Total energy + Delta-G solvation = -4035.951567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04905 -40.47896 -37.46557 -36.96365 -35.63597 -34.78654 -33.93968 -32.91548 -31.57324 -29.86177 -29.24025 -29.10101 -26.64680 -24.54802 -24.10050 -23.35198 -22.58103 -21.58034 -21.39516 -20.84923 -19.07519 -18.00847 -17.48154 -16.84799 -16.70053 -16.27419 -15.87158 -15.54915 -15.27691 -15.00066 -14.67206 -14.46400 -14.33741 -14.17819 -13.84533 -13.65234 -13.44763 -13.22918 -13.09324 -12.88854 -12.66126 -12.51301 -12.41977 -12.19887 -12.09527 -11.84810 -11.71079 -11.68434 -11.40543 -11.34112 -11.14122 -11.02822 -10.81837 -10.40912 -10.38699 -9.91636 -9.73826 -9.63822 -9.45091 -9.29794 -8.81389 -8.59274 -8.53337 -6.08117 -4.08374 1.47592 1.85370 2.18321 2.56216 2.64943 3.27742 3.36915 3.39386 3.62068 3.64307 3.88268 4.12447 4.17377 4.22138 4.38950 4.41118 4.44704 4.54336 4.68403 4.75015 4.79846 4.88714 4.92588 4.97125 5.09223 5.17018 5.26226 5.26990 5.32282 5.34313 5.38623 5.39704 5.57104 5.62506 5.72537 5.79355 5.80781 5.81222 5.99091 6.18937 6.38319 6.39766 6.68572 6.78313 6.90588 6.95793 7.10404 7.19311 7.43127 7.66520 7.74077 8.40412 8.46702 8.95507 9.51978 11.05045 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.002727 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.935102 B =10264.607269 C =10678.085261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.363 5.363 4 N -0.282 5.282 5 C 0.052 3.948 6 C -0.254 4.254 7 C 0.299 3.701 8 N -0.544 5.544 9 C 0.115 3.885 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.083 3.917 13 H 0.116 0.884 14 N -0.659 5.659 15 C 0.054 3.946 16 C 0.019 3.981 17 H 0.115 0.885 18 C 0.237 3.763 19 N -0.465 5.465 20 C -0.004 4.004 21 C -0.527 4.527 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.898 5.898 25 Si 0.876 3.124 26 H -0.274 1.274 27 H -0.264 1.264 28 H -0.287 1.287 29 C 0.486 3.514 30 O -0.516 6.516 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.187 0.813 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.346 0.654 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.024 0.976 48 H 0.034 0.966 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.145 4.493 -5.161 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.148 5.148 4 N -0.104 5.104 5 C -0.133 4.133 6 C -0.285 4.285 7 C 0.083 3.917 8 N -0.279 5.279 9 C -0.007 4.007 10 C -0.173 4.173 11 C -0.151 4.151 12 C -0.031 4.031 13 H 0.133 0.867 14 N -0.289 5.289 15 C -0.076 4.076 16 C -0.003 4.003 17 H 0.133 0.867 18 C -0.080 4.080 19 N -0.141 5.141 20 C -0.043 4.043 21 C -0.564 4.564 22 H 0.092 0.908 23 C -0.131 4.131 24 N -0.536 5.536 25 Si 0.703 3.297 26 H -0.200 1.200 27 H -0.189 1.189 28 H -0.213 1.213 29 C 0.273 3.727 30 O -0.388 6.388 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.166 0.834 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.165 0.835 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.328 4.593 -6.518 31.359 hybrid contribution 0.376 -0.427 -0.627 0.847 sum -29.952 4.166 -7.145 31.073 Atomic orbital electron populations 1.22165 0.93988 1.03162 1.03040 1.21623 0.95191 0.78211 1.04405 1.49053 1.50155 1.11893 1.03724 1.77415 1.23248 1.03080 1.06694 1.23675 0.98810 0.96173 0.94638 1.21248 1.13450 0.98105 0.95671 1.17787 1.01515 0.91263 0.81184 1.44716 1.19694 1.56118 1.07334 1.21605 0.86380 1.00229 0.92481 1.21930 0.98929 1.00250 0.96180 1.21700 0.91856 1.02553 0.98956 1.21708 0.92640 1.01556 0.87221 0.86663 1.60964 1.00760 1.07268 1.59880 1.22352 0.90539 0.94859 0.99858 1.19017 0.92756 0.87584 1.00906 0.86704 1.29018 0.92449 0.93853 0.92708 1.80963 1.09490 1.13492 1.10183 1.19620 0.94789 0.92064 0.97795 1.21030 0.95041 1.09789 1.30579 0.90758 1.24984 0.94933 0.97976 0.95208 1.69902 1.03630 1.36510 1.43527 0.86829 0.77943 0.83440 0.81452 1.19984 1.18869 1.21317 1.22076 0.81409 0.77670 0.91566 1.90837 1.34925 1.56657 1.56420 0.92301 0.91381 0.90356 0.88640 0.89534 0.79634 0.83366 0.90679 0.90625 0.90716 0.88758 0.89081 0.90471 0.83546 0.92331 0.89068 0.95781 0.94754 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.16 0.38 -0.63 16 2 C 0.13 1.13 7.12 -4.05 -0.03 1.10 16 3 N -0.36 -4.30 3.62 -60.39 -0.22 -4.52 16 4 N -0.28 -3.62 12.57 30.60 0.38 -3.23 16 5 C 0.05 0.59 12.01 -17.41 -0.21 0.38 16 6 C -0.25 -3.00 10.84 -39.78 -0.43 -3.43 16 7 C 0.30 3.56 5.22 -153.16 -0.80 2.76 16 8 N -0.54 -5.33 2.80 -116.62 -0.33 -5.66 16 9 C 0.11 0.66 6.34 -4.49 -0.03 0.63 16 10 C -0.13 -0.53 6.02 -26.60 -0.16 -0.69 16 11 C -0.11 -0.69 5.64 -26.52 -0.15 -0.84 16 12 C 0.08 0.79 2.73 -69.08 -0.19 0.60 16 13 H 0.12 0.96 7.80 -51.93 -0.40 0.56 16 14 N -0.66 -8.17 6.15 -108.19 -0.67 -8.84 16 15 C 0.05 0.79 4.80 -3.83 -0.02 0.77 16 16 C 0.02 0.35 2.42 -93.41 -0.23 0.13 16 17 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 18 C 0.24 5.05 12.97 -20.82 -0.27 4.78 16 19 N -0.46 -10.83 18.53 42.09 0.78 -10.05 16 20 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 21 C -0.53 -14.49 9.15 -34.44 -0.32 -14.81 16 22 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 23 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 24 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 25 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.49 5.86 6.89 -11.87 -0.08 5.78 16 30 O -0.52 -8.78 14.60 5.55 0.08 -8.70 16 31 H 0.06 0.34 7.64 -51.93 -0.40 -0.06 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.76 7.97 -51.92 -0.41 0.35 16 36 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.07 0.36 7.58 -51.93 -0.39 -0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.27 8.12 -51.93 -0.42 -0.16 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 44 H 0.35 4.90 7.54 -39.29 -0.30 4.61 16 45 H 0.06 0.99 6.43 -51.93 -0.33 0.65 16 46 H 0.09 1.14 8.05 -51.92 -0.42 0.72 16 47 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 48 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -36.84 405.09 -8.13 -44.97 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.65 Total: 1.89 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.72 Total: -1.72 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.73 Total: -59.02 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.84 -8.13 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.864 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds