Wall clock time and date at job start Wed Apr 1 2020 04:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47492 * 2 1 4 4 N 1.40070 * 126.04537 * 275.50253 * 3 2 1 5 5 C 1.30848 * 108.36886 * 180.25487 * 4 3 2 6 6 C 1.39750 * 108.32920 * 359.78353 * 5 4 3 7 7 C 1.35256 * 126.04682 * 95.37997 * 3 2 1 8 8 N 1.39478 * 126.21962 * 0.02562 * 7 3 2 9 9 C 1.45749 * 117.94850 * 264.74459 * 8 7 3 10 10 C 1.52919 * 110.48665 * 160.92211 * 9 8 7 11 11 C 1.53342 * 108.67748 * 50.75157 * 10 9 8 12 12 C 1.53074 * 108.42650 * 292.47149 * 11 10 9 13 13 H 1.08997 * 109.39616 * 288.85411 * 12 11 10 14 14 N 1.46898 * 109.40034 * 169.02669 * 12 11 10 15 15 C 1.46901 * 110.99881 * 155.00041 * 14 12 11 16 16 C 1.52991 * 109.47315 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47298 * 55.00093 * 16 15 14 18 18 C 1.47198 * 109.47138 * 294.99955 * 16 15 14 19 19 N 7.93622 * 145.80431 * 62.10269 * 2 1 3 20 20 C 1.53007 * 109.47237 * 174.99609 * 16 15 14 21 21 C 1.50699 * 109.46886 * 184.99856 * 20 16 15 22 22 H 1.08001 * 120.00483 * 0.02562 * 21 20 16 23 23 C 1.37886 * 119.99756 * 179.97438 * 21 20 16 24 24 N 1.31510 * 120.00071 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99769 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47096 * 269.99377 * 25 23 21 27 27 H 1.48500 * 109.47200 * 29.99316 * 25 23 21 28 28 H 1.48499 * 109.47258 * 149.99765 * 25 23 21 29 29 C 1.33357 * 117.94348 * 84.73857 * 8 7 3 30 30 O 1.21289 * 118.24464 * 2.22901 * 29 8 7 31 31 H 1.09004 * 109.46831 * 300.00532 * 1 2 3 32 32 H 1.09000 * 109.47267 * 59.99505 * 1 2 3 33 33 H 1.08999 * 109.47733 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46831 * 239.99468 * 2 1 3 35 35 H 1.09008 * 109.46943 * 120.00511 * 2 1 3 36 36 H 1.08006 * 125.83321 * 179.76596 * 5 4 3 37 37 H 1.08006 * 126.09019 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.29916 * 40.60945 * 9 8 7 39 39 H 1.09001 * 109.29951 * 281.22971 * 9 8 7 40 40 H 1.09001 * 109.60310 * 290.99252 * 10 9 8 41 41 H 1.09005 * 109.60033 * 170.50811 * 10 9 8 42 42 H 1.08997 * 109.67807 * 172.73044 * 11 10 9 43 43 H 1.09003 * 109.69924 * 52.21501 * 11 10 9 44 44 H 1.00899 * 110.99588 * 278.94643 * 14 12 11 45 45 H 1.09001 * 109.47252 * 59.99657 * 15 14 12 46 46 H 1.09007 * 109.46900 * 299.99651 * 15 14 12 47 47 H 1.08998 * 109.46503 * 65.00345 * 20 16 15 48 48 H 1.08995 * 109.46885 * 304.99957 * 20 16 15 49 49 H 0.96996 * 120.00203 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1908 2.1944 -1.1273 5 6 2.6475 3.3552 -0.7324 6 6 2.7780 3.3260 0.6587 7 6 2.3804 2.0973 1.0888 8 7 2.3567 1.6551 2.4114 9 6 1.1821 1.9684 3.2154 10 6 1.1028 1.0431 4.4303 11 6 2.4562 1.0618 5.1510 12 6 3.4958 0.3967 4.2454 13 1 3.3057 -0.6757 4.2029 14 7 4.8396 0.6329 4.7898 15 6 5.7752 -0.4125 4.3544 16 6 7.1609 -0.1327 4.9393 17 1 7.0860 -0.0402 6.0228 18 6 7.6876 1.1208 4.3752 19 7 8.0942 2.0869 3.9420 20 6 8.1044 -1.2854 4.5899 21 6 9.4329 -1.0703 5.2679 22 1 9.5887 -0.1988 5.8865 23 6 10.4493 -1.9866 5.0993 24 7 11.6089 -1.7987 5.6905 25 14 10.1797 -3.4943 4.0299 26 1 9.6528 -4.6046 4.8635 27 1 9.2027 -3.1730 2.9586 28 1 11.4690 -3.9039 3.4175 29 6 3.4101 0.9720 2.8609 30 8 4.3493 0.8066 2.1114 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8900 36 1 2.8837 4.1927 -1.3722 37 1 3.1309 4.1346 1.2818 38 1 0.2858 1.8431 2.6079 39 1 1.2426 3.0028 3.5538 40 1 0.8768 0.0283 4.1029 41 1 0.3234 1.3938 5.1068 42 1 2.3803 0.5112 6.0886 43 1 2.7507 2.0916 5.3529 44 1 5.1770 1.5490 4.5349 45 1 5.8347 -0.4166 3.2660 46 1 5.4228 -1.3835 4.7027 47 1 8.2491 -1.3217 3.5102 48 1 7.6708 -2.2257 4.9303 49 1 12.3241 -2.4431 5.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570897902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:30 Heat of formation + Delta-G solvation = 50.310826 kcal Electronic energy + Delta-G solvation = -30752.025267 eV Core-core repulsion = 26714.964357 eV Total energy + Delta-G solvation = -4037.060909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.87586 -41.33312 -38.85901 -37.75832 -36.85752 -35.63264 -35.45377 -34.33902 -32.98993 -30.59215 -30.16394 -30.04929 -28.10264 -25.30638 -24.89531 -24.28093 -23.56383 -23.25413 -22.33490 -21.59975 -19.80411 -18.96877 -18.78119 -18.42844 -18.08596 -17.13960 -16.72676 -16.59148 -16.29627 -15.88507 -15.78418 -15.40853 -15.23405 -15.07590 -14.91654 -14.72714 -14.49690 -14.38782 -14.23880 -14.14488 -14.06864 -13.75796 -13.52409 -13.20597 -13.05008 -12.90629 -12.69399 -12.54852 -12.43734 -12.39503 -12.30563 -12.16425 -11.97272 -11.78699 -11.70840 -11.53186 -11.30528 -11.17341 -10.74522 -10.48568 -10.23093 -9.68942 -9.54422 -8.26609 -6.31860 0.60510 1.06089 1.33117 1.39122 1.43241 1.53311 1.69320 1.90454 1.92112 1.94240 2.38912 2.96543 3.08929 3.20952 3.38718 3.44520 3.77981 3.85674 3.93193 3.98597 4.03956 4.06999 4.18031 4.27649 4.31516 4.38744 4.44126 4.49812 4.58582 4.60765 4.69608 4.73928 4.83259 4.86900 4.90386 4.95838 5.05855 5.09088 5.11594 5.20636 5.24322 5.35936 5.44204 5.55951 5.60577 5.81030 5.90721 5.99837 6.14893 6.24214 6.56427 6.71520 6.77795 6.88928 7.32413 8.90344 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.002727 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.935102 B =10264.607269 C =10678.085261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 N -0.368 5.368 4 N -0.312 5.312 5 C 0.049 3.951 6 C -0.276 4.276 7 C 0.290 3.710 8 N -0.535 5.535 9 C 0.105 3.895 10 C -0.123 4.123 11 C -0.106 4.106 12 C 0.084 3.916 13 H 0.135 0.865 14 N -0.653 5.653 15 C 0.067 3.933 16 C 0.025 3.975 17 H 0.129 0.871 18 C 0.247 3.753 19 N -0.509 5.509 20 C -0.001 4.001 21 C -0.530 4.530 22 H 0.031 0.969 23 C 0.005 3.995 24 N -0.952 5.952 25 Si 0.947 3.053 26 H -0.250 1.250 27 H -0.247 1.247 28 H -0.294 1.294 29 C 0.485 3.515 30 O -0.575 6.575 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.213 0.787 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.333 0.667 45 H 0.036 0.964 46 H 0.125 0.875 47 H 0.016 0.984 48 H 0.068 0.932 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.957 2.630 -4.604 35.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.002 4.002 3 N -0.153 5.153 4 N -0.135 5.135 5 C -0.135 4.135 6 C -0.307 4.307 7 C 0.072 3.928 8 N -0.268 5.268 9 C -0.015 4.015 10 C -0.161 4.161 11 C -0.144 4.144 12 C -0.029 4.029 13 H 0.153 0.847 14 N -0.282 5.282 15 C -0.063 4.063 16 C 0.003 3.997 17 H 0.147 0.853 18 C -0.070 4.070 19 N -0.186 5.186 20 C -0.040 4.040 21 C -0.568 4.568 22 H 0.050 0.950 23 C -0.192 4.192 24 N -0.593 5.593 25 Si 0.770 3.230 26 H -0.174 1.174 27 H -0.170 1.170 28 H -0.221 1.221 29 C 0.273 3.727 30 O -0.452 6.452 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.150 0.850 45 H 0.054 0.946 46 H 0.143 0.857 47 H 0.034 0.966 48 H 0.086 0.914 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -34.229 2.741 -5.942 34.849 hybrid contribution 1.560 0.267 -0.762 1.756 sum -32.670 3.008 -6.704 33.486 Atomic orbital electron populations 1.22090 0.91569 1.04627 1.02826 1.21867 0.97144 0.76977 1.04200 1.49299 1.50018 1.12594 1.03414 1.77352 1.24519 1.03893 1.07704 1.24164 0.97894 0.96508 0.94919 1.21504 1.14258 0.98746 0.96239 1.18071 1.01099 0.91429 0.82174 1.44862 1.20315 1.54814 1.06788 1.21967 0.85130 1.01337 0.93031 1.21949 0.98276 1.00562 0.95315 1.21715 0.91731 1.01969 0.99010 1.21981 0.91738 1.02969 0.86248 0.84718 1.61024 1.01615 1.05905 1.59616 1.22213 0.88849 0.97027 0.98247 1.19139 0.94105 0.84700 1.01757 0.85297 1.29747 0.91387 0.94126 0.91704 1.80948 1.10936 1.15010 1.11746 1.19561 0.92977 0.94911 0.96564 1.21380 0.97700 1.08002 1.29747 0.95048 1.26007 0.94481 1.01894 0.96838 1.70077 1.05007 1.38252 1.45964 0.85710 0.77927 0.79442 0.79937 1.17390 1.17050 1.22097 1.22572 0.80917 0.77140 0.92062 1.90818 1.37186 1.59150 1.58062 0.91534 0.92471 0.87984 0.89175 0.89409 0.77043 0.82912 0.89349 0.89924 0.89529 0.85751 0.87366 0.91183 0.85010 0.94552 0.85686 0.96610 0.91429 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.24 71.98 0.74 -0.83 16 2 C 0.12 2.02 7.12 86.38 0.62 2.63 16 3 N -0.37 -8.63 3.62 -344.98 -1.25 -9.88 16 4 N -0.31 -8.07 12.57 -57.09 -0.72 -8.79 16 5 C 0.05 1.12 12.01 85.20 1.02 2.14 16 6 C -0.28 -6.59 10.84 22.14 0.24 -6.35 16 7 C 0.29 6.79 5.22 131.32 0.69 7.48 16 8 N -0.53 -9.74 2.80 -642.05 -1.80 -11.54 16 9 C 0.11 0.90 6.34 86.49 0.55 1.45 16 10 C -0.12 -0.43 6.02 30.68 0.18 -0.24 16 11 C -0.11 -0.91 5.64 30.73 0.17 -0.74 16 12 C 0.08 1.37 2.73 44.03 0.12 1.49 16 13 H 0.14 1.72 7.80 -2.39 -0.02 1.70 16 14 N -0.65 -14.95 6.15 -496.19 -3.05 -18.00 16 15 C 0.07 1.81 4.80 86.30 0.41 2.23 16 16 C 0.02 0.88 2.42 -12.60 -0.03 0.85 16 17 H 0.13 4.27 8.14 -2.39 -0.02 4.25 16 18 C 0.25 10.69 12.97 89.46 1.16 11.85 16 19 N -0.51 -24.50 18.53 19.98 0.37 -24.13 16 20 C 0.00 -0.05 3.49 29.85 0.10 0.06 16 21 C -0.53 -29.51 9.15 25.60 0.23 -29.28 16 22 H 0.03 1.96 7.84 -2.91 -0.02 1.94 16 23 C 0.00 0.27 5.47 84.66 0.46 0.73 16 24 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 25 Si 0.95 42.94 27.47 68.60 1.88 44.82 16 26 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 29 C 0.48 11.14 6.89 87.71 0.60 11.74 16 30 O -0.58 -19.75 14.60 -3.06 -0.04 -19.79 16 31 H 0.07 0.58 7.64 -2.39 -0.02 0.56 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.44 7.97 -2.38 -0.02 1.42 16 36 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.09 0.57 7.58 -2.39 -0.02 0.55 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.18 8.12 -2.39 -0.02 0.16 16 41 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 44 H 0.33 9.26 7.54 -89.70 -0.68 8.58 16 45 H 0.04 1.19 6.43 -2.39 -0.02 1.17 16 46 H 0.13 2.58 8.05 -2.38 -0.02 2.56 16 47 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 48 H 0.07 2.50 7.57 -2.39 -0.02 2.48 16 49 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -85.33 405.09 3.20 -82.13 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.23 Total: 19.64 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 7.28 Total: 5.20 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.15 Total: -132.00 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.04 Total: -19.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -85.33 3.20 -82.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.445 kcal (2) G-P(sol) polarization free energy of solvation -85.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds