Wall clock time and date at job start Wed Apr 1 2020 04:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47047 * 2 1 4 4 N 1.40074 * 126.04675 * 275.39936 * 3 2 1 5 5 C 1.30841 * 108.37301 * 180.02562 * 4 3 2 6 6 C 1.39757 * 108.32610 * 359.78276 * 5 4 3 7 7 C 1.35256 * 126.05050 * 95.44570 * 3 2 1 8 8 N 1.39483 * 126.20993 * 359.92778 * 7 3 2 9 9 C 1.45755 * 117.94574 * 265.58926 * 8 7 3 10 10 C 1.52919 * 110.48954 * 199.07878 * 9 8 7 11 11 C 1.53352 * 108.67166 * 309.24821 * 10 9 8 12 12 C 1.53067 * 108.42367 * 67.52964 * 11 10 9 13 13 H 1.09004 * 109.40135 * 71.14677 * 12 11 10 14 14 N 1.46906 * 109.39952 * 190.96982 * 12 11 10 15 15 C 1.46901 * 110.99685 * 205.00112 * 14 12 11 16 16 C 1.53003 * 109.46519 * 179.97438 * 15 14 12 17 17 H 1.08997 * 109.47151 * 55.00362 * 16 15 14 18 18 C 1.47199 * 109.47530 * 294.99916 * 16 15 14 19 19 N 8.35375 * 118.73273 * 117.72689 * 2 1 3 20 20 C 1.53005 * 109.46772 * 175.00103 * 16 15 14 21 21 C 1.50706 * 109.47020 * 185.00510 * 20 16 15 22 22 H 1.07997 * 119.99802 * 359.97438 * 21 20 16 23 23 C 1.37872 * 119.99845 * 180.02562 * 21 20 16 24 24 N 1.31513 * 120.00030 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00179 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47168 * 269.99931 * 25 23 21 27 27 H 1.48501 * 109.47038 * 30.00109 * 25 23 21 28 28 H 1.48506 * 109.47083 * 150.00291 * 25 23 21 29 29 C 1.33355 * 117.94546 * 85.59493 * 8 7 3 30 30 O 1.21292 * 118.24631 * 357.77325 * 29 8 7 31 31 H 1.09002 * 109.47469 * 60.00206 * 1 2 3 32 32 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46868 * 299.99742 * 1 2 3 34 34 H 1.09003 * 109.47175 * 239.99981 * 2 1 3 35 35 H 1.08994 * 109.47561 * 120.00060 * 2 1 3 36 36 H 1.08001 * 125.83920 * 180.02562 * 5 4 3 37 37 H 1.07997 * 126.08938 * 180.26763 * 6 5 4 38 38 H 1.08998 * 109.29829 * 78.76232 * 9 8 7 39 39 H 1.09001 * 109.13288 * 319.28589 * 9 8 7 40 40 H 1.08992 * 109.60243 * 189.49107 * 10 9 8 41 41 H 1.08998 * 109.73649 * 69.08232 * 10 9 8 42 42 H 1.08994 * 109.67165 * 307.79851 * 11 10 9 43 43 H 1.08993 * 109.67148 * 187.26058 * 11 10 9 44 44 H 1.00897 * 110.99679 * 328.95597 * 14 12 11 45 45 H 1.09002 * 109.47323 * 60.00416 * 15 14 12 46 46 H 1.08996 * 109.47275 * 299.99553 * 15 14 12 47 47 H 1.08994 * 109.47627 * 65.00158 * 20 16 15 48 48 H 1.09002 * 109.47057 * 304.99967 * 20 16 15 49 49 H 0.97004 * 120.00604 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1926 2.1939 -1.1275 5 6 2.6438 3.3566 -0.7321 6 6 2.7688 3.3293 0.6596 7 6 2.3814 2.0971 1.0886 8 7 2.3573 1.6549 2.4112 9 6 1.1752 1.9535 3.2099 10 6 1.4921 1.8327 4.7010 11 6 2.1689 0.4796 4.9511 12 6 3.5443 0.4953 4.2796 13 1 4.2099 1.1579 4.8329 14 7 4.1014 -0.8641 4.2765 15 6 5.5686 -0.8316 4.2116 16 6 6.1107 -2.2624 4.2110 17 1 5.6520 -2.8243 3.3975 18 6 5.7919 -2.9086 5.4946 19 7 5.5458 -3.4081 6.4841 20 6 7.6283 -2.2325 4.0181 21 6 8.1467 -3.6422 3.8943 22 1 7.4623 -4.4759 3.9483 23 6 9.4948 -3.8675 3.7132 24 7 9.9473 -5.0976 3.6058 25 14 10.6786 -2.4254 3.6206 26 1 10.8153 -1.9872 2.2083 27 1 10.1555 -1.3022 4.4390 28 1 12.0062 -2.8406 4.1406 29 6 3.4173 0.9855 2.8658 30 8 4.3275 0.7605 2.0962 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.8761 4.1955 -1.3715 37 1 3.1131 4.1409 1.2834 38 1 0.3804 1.2534 2.9526 39 1 0.8447 2.9692 2.9929 40 1 0.5687 1.8918 5.2770 41 1 2.1625 2.6380 5.0012 42 1 1.5616 -0.3188 4.5248 43 1 2.2856 0.3203 6.0229 44 1 3.7864 -1.3857 5.0808 45 1 5.9588 -0.2960 5.0771 46 1 5.8807 -0.3240 3.2990 47 1 8.0942 -1.7481 4.8761 48 1 7.8685 -1.6763 3.1120 49 1 10.8957 -5.2562 3.4780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570897904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:39 Heat of formation + Delta-G solvation = 77.625230 kcal Electronic energy + Delta-G solvation = -30678.577170 eV Core-core repulsion = 26642.700702 eV Total energy + Delta-G solvation = -4035.876468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95334 -40.34725 -37.53323 -36.87750 -35.70390 -34.67650 -33.96817 -32.90343 -31.57554 -29.77308 -29.19309 -29.07716 -26.62923 -24.64779 -24.04144 -23.46618 -22.39530 -21.49723 -21.31110 -20.94463 -19.02331 -17.85091 -17.21156 -16.84092 -16.67186 -16.30390 -15.89585 -15.28050 -15.22242 -15.04897 -14.81152 -14.45969 -14.25865 -14.01672 -13.91842 -13.82354 -13.36698 -13.28249 -13.13050 -12.82175 -12.75442 -12.45517 -12.37284 -12.26452 -12.03977 -11.88518 -11.80503 -11.60256 -11.36002 -11.34129 -11.11456 -10.95719 -10.86829 -10.39809 -10.08712 -9.92545 -9.73301 -9.56750 -9.36319 -9.30083 -8.75496 -8.59747 -8.56367 -6.08179 -4.08626 1.54611 1.92807 2.38241 2.60022 2.69249 3.29878 3.37678 3.39200 3.49072 3.53498 3.89429 4.14836 4.19519 4.29794 4.34667 4.41501 4.50660 4.67782 4.69904 4.75572 4.83861 4.87612 4.93009 5.00080 5.19927 5.21892 5.26702 5.27822 5.30617 5.40210 5.41370 5.45575 5.49268 5.56724 5.65367 5.70820 5.80953 5.84975 6.09736 6.21067 6.38252 6.43658 6.71642 6.85711 6.97563 6.99394 7.15838 7.22248 7.50370 7.66160 7.91238 8.30313 8.44216 8.94797 9.51960 11.04890 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.002871 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.580117 B = 9750.303549 C =10769.019729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.358 5.358 4 N -0.282 5.282 5 C 0.050 3.950 6 C -0.260 4.260 7 C 0.305 3.695 8 N -0.548 5.548 9 C 0.116 3.884 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.082 3.918 13 H 0.084 0.916 14 N -0.673 5.673 15 C 0.062 3.938 16 C 0.018 3.982 17 H 0.116 0.884 18 C 0.239 3.761 19 N -0.469 5.469 20 C -0.004 4.004 21 C -0.527 4.527 22 H 0.074 0.926 23 C 0.071 3.929 24 N -0.898 5.898 25 Si 0.877 3.123 26 H -0.274 1.274 27 H -0.264 1.264 28 H -0.287 1.287 29 C 0.530 3.470 30 O -0.504 6.504 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.185 0.815 37 H 0.148 0.852 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.349 0.651 45 H 0.036 0.964 46 H 0.108 0.892 47 H 0.023 0.977 48 H 0.036 0.964 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.479 20.351 -2.522 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.143 5.143 4 N -0.105 5.105 5 C -0.135 4.135 6 C -0.291 4.291 7 C 0.088 3.912 8 N -0.283 5.283 9 C -0.006 4.006 10 C -0.169 4.169 11 C -0.168 4.168 12 C -0.031 4.031 13 H 0.101 0.899 14 N -0.307 5.307 15 C -0.068 4.068 16 C -0.004 4.004 17 H 0.134 0.866 18 C -0.078 4.078 19 N -0.146 5.146 20 C -0.043 4.043 21 C -0.565 4.565 22 H 0.092 0.908 23 C -0.131 4.131 24 N -0.536 5.536 25 Si 0.704 3.296 26 H -0.199 1.199 27 H -0.189 1.189 28 H -0.213 1.213 29 C 0.317 3.683 30 O -0.375 6.375 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.202 0.798 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.169 0.831 45 H 0.054 0.946 46 H 0.126 0.874 47 H 0.041 0.959 48 H 0.054 0.946 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.633 18.368 -3.079 30.090 hybrid contribution 1.351 1.444 1.154 2.289 sum -22.282 19.813 -1.925 29.879 Atomic orbital electron populations 1.22156 0.94138 1.03181 1.02813 1.21685 0.95021 0.77976 1.04934 1.49108 1.49515 1.12020 1.03693 1.77422 1.23089 1.03074 1.06884 1.23640 0.99132 0.96157 0.94568 1.21181 1.14450 0.97822 0.95641 1.17748 1.01313 0.91101 0.81018 1.44551 1.19027 1.57373 1.07382 1.21569 0.86122 1.01979 0.90881 1.21853 1.02569 0.98054 0.94394 1.21926 0.94871 0.98308 1.01695 1.21313 0.97507 0.92888 0.91405 0.89850 1.60188 1.10290 1.11776 1.48419 1.22360 0.85029 0.96425 1.02965 1.19049 1.00385 0.92896 0.88027 0.86634 1.29202 0.91338 0.92829 0.94449 1.81023 1.11269 1.09480 1.12816 1.19626 0.87677 0.99240 0.97733 1.21020 0.93725 0.90950 1.50791 0.90808 1.24979 0.98248 0.95557 0.94297 1.69904 1.14610 1.19610 1.49449 0.86822 0.80563 0.83267 0.78962 1.19914 1.18891 1.21334 1.20421 0.80908 0.76426 0.90558 1.90775 1.37348 1.53135 1.56256 0.91532 0.90329 0.92430 0.88565 0.88876 0.79766 0.83465 0.91424 0.89983 0.88863 0.90356 0.89778 0.89962 0.83064 0.94574 0.87385 0.95851 0.94565 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.13 1.24 7.12 -4.04 -0.03 1.21 16 3 N -0.36 -4.28 3.62 -60.40 -0.22 -4.50 16 4 N -0.28 -3.55 12.56 30.60 0.38 -3.17 16 5 C 0.05 0.52 12.01 -17.41 -0.21 0.31 16 6 C -0.26 -2.77 10.84 -39.78 -0.43 -3.20 16 7 C 0.31 3.50 5.22 -153.16 -0.80 2.70 16 8 N -0.55 -5.27 2.80 -116.62 -0.33 -5.60 16 9 C 0.12 0.66 6.35 -4.49 -0.03 0.63 16 10 C -0.13 -0.54 6.02 -26.59 -0.16 -0.70 16 11 C -0.13 -0.80 5.29 -26.51 -0.14 -0.94 16 12 C 0.08 0.80 2.76 -69.08 -0.19 0.61 16 13 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 14 N -0.67 -8.26 6.20 -108.18 -0.67 -8.93 16 15 C 0.06 0.91 4.80 -3.82 -0.02 0.89 16 16 C 0.02 0.34 2.42 -93.40 -0.23 0.11 16 17 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 18 C 0.24 4.71 12.97 -20.78 -0.27 4.44 16 19 N -0.47 -9.95 18.53 42.13 0.78 -9.17 16 20 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 21 C -0.53 -14.55 9.15 -34.44 -0.32 -14.86 16 22 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 23 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 24 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 25 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 C 0.53 6.38 7.17 -11.87 -0.09 6.29 16 30 O -0.50 -8.35 14.61 5.55 0.08 -8.27 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.38 7.82 -51.93 -0.41 -0.03 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.98 7.98 -51.93 -0.41 0.56 16 36 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.07 0.33 7.82 -51.93 -0.41 -0.08 16 39 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 42 H 0.08 0.54 8.13 -51.93 -0.42 0.11 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.35 4.05 7.43 -39.29 -0.29 3.75 16 45 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 46 H 0.11 1.75 6.44 -51.93 -0.33 1.41 16 47 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 48 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -36.00 405.36 -8.14 -44.14 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.67 Total: 1.08 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.72 Total: -1.52 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.72 Total: -58.16 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.00 -8.14 -44.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.768 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds