Wall clock time and date at job start Wed Apr 1 2020 04:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47047 * 2 1 4 4 N 1.40074 * 126.04675 * 275.39936 * 3 2 1 5 5 C 1.30841 * 108.37301 * 180.02562 * 4 3 2 6 6 C 1.39757 * 108.32610 * 359.78276 * 5 4 3 7 7 C 1.35256 * 126.05050 * 95.44570 * 3 2 1 8 8 N 1.39483 * 126.20993 * 359.92778 * 7 3 2 9 9 C 1.45755 * 117.94574 * 265.58926 * 8 7 3 10 10 C 1.52919 * 110.48954 * 199.07878 * 9 8 7 11 11 C 1.53352 * 108.67166 * 309.24821 * 10 9 8 12 12 C 1.53067 * 108.42367 * 67.52964 * 11 10 9 13 13 H 1.09004 * 109.40135 * 71.14677 * 12 11 10 14 14 N 1.46906 * 109.39952 * 190.96982 * 12 11 10 15 15 C 1.46901 * 110.99685 * 205.00112 * 14 12 11 16 16 C 1.53003 * 109.46519 * 179.97438 * 15 14 12 17 17 H 1.08997 * 109.47151 * 55.00362 * 16 15 14 18 18 C 1.47199 * 109.47530 * 294.99916 * 16 15 14 19 19 N 8.35375 * 118.73273 * 117.72689 * 2 1 3 20 20 C 1.53005 * 109.46772 * 175.00103 * 16 15 14 21 21 C 1.50706 * 109.47020 * 185.00510 * 20 16 15 22 22 H 1.07997 * 119.99802 * 359.97438 * 21 20 16 23 23 C 1.37872 * 119.99845 * 180.02562 * 21 20 16 24 24 N 1.31513 * 120.00030 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00179 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47168 * 269.99931 * 25 23 21 27 27 H 1.48501 * 109.47038 * 30.00109 * 25 23 21 28 28 H 1.48506 * 109.47083 * 150.00291 * 25 23 21 29 29 C 1.33355 * 117.94546 * 85.59493 * 8 7 3 30 30 O 1.21292 * 118.24631 * 357.77325 * 29 8 7 31 31 H 1.09002 * 109.47469 * 60.00206 * 1 2 3 32 32 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46868 * 299.99742 * 1 2 3 34 34 H 1.09003 * 109.47175 * 239.99981 * 2 1 3 35 35 H 1.08994 * 109.47561 * 120.00060 * 2 1 3 36 36 H 1.08001 * 125.83920 * 180.02562 * 5 4 3 37 37 H 1.07997 * 126.08938 * 180.26763 * 6 5 4 38 38 H 1.08998 * 109.29829 * 78.76232 * 9 8 7 39 39 H 1.09001 * 109.13288 * 319.28589 * 9 8 7 40 40 H 1.08992 * 109.60243 * 189.49107 * 10 9 8 41 41 H 1.08998 * 109.73649 * 69.08232 * 10 9 8 42 42 H 1.08994 * 109.67165 * 307.79851 * 11 10 9 43 43 H 1.08993 * 109.67148 * 187.26058 * 11 10 9 44 44 H 1.00897 * 110.99679 * 328.95597 * 14 12 11 45 45 H 1.09002 * 109.47323 * 60.00416 * 15 14 12 46 46 H 1.08996 * 109.47275 * 299.99553 * 15 14 12 47 47 H 1.08994 * 109.47627 * 65.00158 * 20 16 15 48 48 H 1.09002 * 109.47057 * 304.99967 * 20 16 15 49 49 H 0.97004 * 120.00604 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1926 2.1939 -1.1275 5 6 2.6438 3.3566 -0.7321 6 6 2.7688 3.3293 0.6596 7 6 2.3814 2.0971 1.0886 8 7 2.3573 1.6549 2.4112 9 6 1.1752 1.9535 3.2099 10 6 1.4921 1.8327 4.7010 11 6 2.1689 0.4796 4.9511 12 6 3.5443 0.4953 4.2796 13 1 4.2099 1.1579 4.8329 14 7 4.1014 -0.8641 4.2765 15 6 5.5686 -0.8316 4.2116 16 6 6.1107 -2.2624 4.2110 17 1 5.6520 -2.8243 3.3975 18 6 5.7919 -2.9086 5.4946 19 7 5.5458 -3.4081 6.4841 20 6 7.6283 -2.2325 4.0181 21 6 8.1467 -3.6422 3.8943 22 1 7.4623 -4.4759 3.9483 23 6 9.4948 -3.8675 3.7132 24 7 9.9473 -5.0976 3.6058 25 14 10.6786 -2.4254 3.6206 26 1 10.8153 -1.9872 2.2083 27 1 10.1555 -1.3022 4.4390 28 1 12.0062 -2.8406 4.1406 29 6 3.4173 0.9855 2.8658 30 8 4.3275 0.7605 2.0962 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.8761 4.1955 -1.3715 37 1 3.1131 4.1409 1.2834 38 1 0.3804 1.2534 2.9526 39 1 0.8447 2.9692 2.9929 40 1 0.5687 1.8918 5.2770 41 1 2.1625 2.6380 5.0012 42 1 1.5616 -0.3188 4.5248 43 1 2.2856 0.3203 6.0229 44 1 3.7864 -1.3857 5.0808 45 1 5.9588 -0.2960 5.0771 46 1 5.8807 -0.3240 3.2990 47 1 8.0942 -1.7481 4.8761 48 1 7.8685 -1.6763 3.1120 49 1 10.8957 -5.2562 3.4780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570897904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:39 Heat of formation + Delta-G solvation = 53.251684 kcal Electronic energy + Delta-G solvation = -30679.634086 eV Core-core repulsion = 26642.700702 eV Total energy + Delta-G solvation = -4036.933384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.74454 -41.16854 -38.90096 -37.65205 -36.87946 -35.62181 -35.39502 -34.33625 -32.98095 -30.52484 -30.13674 -29.96442 -28.09548 -25.38298 -24.84469 -24.46881 -23.40452 -23.21668 -22.11033 -21.69801 -19.73457 -18.97795 -18.62027 -18.37280 -17.74382 -17.18056 -16.70282 -16.58237 -16.02426 -15.98650 -15.80021 -15.49667 -15.25017 -15.00189 -14.84910 -14.68235 -14.60513 -14.40488 -14.24012 -14.12497 -14.02482 -13.72732 -13.46241 -13.24096 -13.12660 -12.98188 -12.71752 -12.54987 -12.44329 -12.30427 -12.25526 -12.16206 -11.92273 -11.73440 -11.70967 -11.50227 -11.34545 -10.94360 -10.76890 -10.39411 -10.11962 -9.57903 -9.52061 -8.28526 -6.33889 0.71806 1.15884 1.39825 1.40316 1.51206 1.54172 1.81087 1.89386 1.89755 1.96331 2.37144 3.02611 3.06757 3.16535 3.49079 3.54592 3.71997 3.76889 3.98826 4.01755 4.08367 4.11808 4.23157 4.25990 4.28536 4.36789 4.44367 4.51739 4.55351 4.66942 4.75085 4.75224 4.81894 4.83183 4.95917 5.00362 5.04460 5.06842 5.11662 5.15480 5.19489 5.29233 5.39636 5.58054 5.68867 5.78621 6.04556 6.17107 6.21960 6.31677 6.69080 6.69117 6.75317 7.06790 7.30495 8.88240 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.002871 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.580117 B = 9750.303549 C =10769.019729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.121 3.879 3 N -0.369 5.369 4 N -0.316 5.316 5 C 0.050 3.950 6 C -0.269 4.269 7 C 0.291 3.709 8 N -0.539 5.539 9 C 0.108 3.892 10 C -0.121 4.121 11 C -0.124 4.124 12 C 0.083 3.917 13 H 0.094 0.906 14 N -0.680 5.680 15 C 0.077 3.923 16 C 0.027 3.973 17 H 0.111 0.889 18 C 0.250 3.750 19 N -0.494 5.494 20 C -0.002 4.002 21 C -0.531 4.531 22 H 0.032 0.968 23 C 0.006 3.994 24 N -0.951 5.951 25 Si 0.945 3.055 26 H -0.263 1.263 27 H -0.239 1.239 28 H -0.289 1.289 29 C 0.527 3.473 30 O -0.559 6.559 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.215 0.785 37 H 0.164 0.836 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.354 0.646 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.030 0.970 48 H 0.050 0.950 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.005 23.481 -1.411 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 N -0.155 5.155 4 N -0.140 5.140 5 C -0.134 4.134 6 C -0.300 4.300 7 C 0.074 3.926 8 N -0.273 5.273 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.162 4.162 12 C -0.030 4.030 13 H 0.111 0.889 14 N -0.314 5.314 15 C -0.053 4.053 16 C 0.005 3.995 17 H 0.129 0.871 18 C -0.066 4.066 19 N -0.171 5.171 20 C -0.041 4.041 21 C -0.569 4.569 22 H 0.050 0.950 23 C -0.191 4.191 24 N -0.592 5.592 25 Si 0.768 3.232 26 H -0.188 1.188 27 H -0.162 1.162 28 H -0.215 1.215 29 C 0.316 3.684 30 O -0.435 6.435 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.175 0.825 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.049 0.951 48 H 0.068 0.932 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.236 21.527 -1.947 33.227 hybrid contribution 1.741 0.412 0.775 1.950 sum -23.495 21.939 -1.172 32.167 Atomic orbital electron populations 1.22069 0.91845 1.04287 1.02813 1.21766 0.96862 0.77397 1.03975 1.49281 1.49946 1.12452 1.03774 1.77368 1.24622 1.04145 1.07820 1.24213 0.97827 0.96282 0.95107 1.21499 1.14289 0.98180 0.96026 1.18113 1.01306 0.91500 0.81717 1.44661 1.19475 1.56154 1.06980 1.21917 0.84776 1.03116 0.91449 1.21874 1.03862 0.96790 0.93344 1.21944 0.92542 0.99623 1.02099 1.21440 0.99782 0.91317 0.90425 0.88862 1.60023 1.08657 1.13824 1.48929 1.22074 0.86789 0.93336 1.03059 1.18953 0.98104 0.95302 0.87136 0.87091 1.29429 0.90671 0.92151 0.94369 1.81025 1.12038 1.10304 1.13745 1.19550 0.90187 0.95872 0.98493 1.21361 0.93279 0.92589 1.49651 0.94996 1.25986 1.00516 0.98530 0.94081 1.70072 1.15138 1.22367 1.51577 0.85729 0.77613 0.80019 0.79808 1.18833 1.16160 1.21513 1.20878 0.80625 0.75868 0.91045 1.90749 1.39478 1.55495 1.57760 0.92185 0.88632 0.91626 0.89448 0.89885 0.76807 0.81818 0.90390 0.88563 0.85847 0.89803 0.89920 0.88392 0.82477 0.93141 0.88461 0.95128 0.93187 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.24 71.98 0.74 -1.27 16 2 C 0.12 2.41 7.12 86.38 0.62 3.03 16 3 N -0.37 -8.79 3.62 -344.99 -1.25 -10.04 16 4 N -0.32 -7.95 12.56 -57.10 -0.72 -8.66 16 5 C 0.05 1.00 12.01 85.21 1.02 2.02 16 6 C -0.27 -5.41 10.84 22.14 0.24 -5.17 16 7 C 0.29 6.42 5.22 131.32 0.68 7.10 16 8 N -0.54 -9.51 2.80 -642.04 -1.80 -11.31 16 9 C 0.11 0.89 6.35 86.49 0.55 1.44 16 10 C -0.12 -0.52 6.02 30.69 0.18 -0.34 16 11 C -0.12 -1.12 5.29 30.73 0.16 -0.96 16 12 C 0.08 1.45 2.76 44.03 0.12 1.57 16 13 H 0.09 1.48 7.80 -2.38 -0.02 1.46 16 14 N -0.68 -15.70 6.20 -496.17 -3.08 -18.78 16 15 C 0.08 2.18 4.80 86.30 0.41 2.60 16 16 C 0.03 0.97 2.42 -12.60 -0.03 0.94 16 17 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 18 C 0.25 9.77 12.97 89.45 1.16 10.93 16 19 N -0.49 -20.77 18.53 20.00 0.37 -20.40 16 20 C 0.00 -0.08 3.49 29.85 0.10 0.02 16 21 C -0.53 -29.84 9.15 25.60 0.23 -29.61 16 22 H 0.03 2.00 7.84 -2.91 -0.02 1.98 16 23 C 0.01 0.34 5.47 84.65 0.46 0.80 16 24 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 25 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 C 0.53 12.10 7.17 87.71 0.63 12.72 16 30 O -0.56 -18.55 14.61 -3.07 -0.04 -18.59 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.75 7.82 -2.39 -0.02 0.73 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.78 7.98 -2.39 -0.02 1.76 16 36 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.08 0.52 7.82 -2.39 -0.02 0.50 16 39 H 0.10 0.57 8.08 -2.39 -0.02 0.55 16 40 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.08 0.34 8.12 -2.39 -0.02 0.32 16 42 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.35 7.58 7.43 -89.70 -0.67 6.91 16 45 H 0.05 1.28 8.05 -2.39 -0.02 1.26 16 46 H 0.10 3.06 6.44 -2.39 -0.02 3.04 16 47 H 0.03 1.30 7.20 -2.39 -0.02 1.29 16 48 H 0.05 2.08 7.57 -2.39 -0.02 2.06 16 49 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -81.48 405.36 3.20 -78.29 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.24 Total: 18.08 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 7.29 Total: 5.84 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -6.17 Total: -129.03 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.04 Total: -18.59 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -81.48 3.20 -78.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.538 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds