Wall clock time and date at job start Wed Apr 1 2020 04:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47125 * 2 1 4 4 N 1.40075 * 126.04828 * 275.40090 * 3 2 1 5 5 C 1.30846 * 108.37399 * 180.02562 * 4 3 2 6 6 C 1.39760 * 108.32809 * 359.77711 * 5 4 3 7 7 C 1.35263 * 126.05007 * 95.44604 * 3 2 1 8 8 N 1.39477 * 126.21503 * 359.92047 * 7 3 2 9 9 C 1.45749 * 117.95035 * 265.59901 * 8 7 3 10 10 C 1.52917 * 110.48768 * 199.07249 * 9 8 7 11 11 C 1.53334 * 108.67542 * 309.24379 * 10 9 8 12 12 C 1.53069 * 108.42536 * 67.53180 * 11 10 9 13 13 H 1.09006 * 109.40389 * 71.14093 * 12 11 10 14 14 N 1.46902 * 109.40201 * 190.97199 * 12 11 10 15 15 C 1.46905 * 110.99673 * 205.00345 * 14 12 11 16 16 C 1.52998 * 109.46851 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47500 * 304.99796 * 16 15 14 18 18 C 1.47203 * 109.47530 * 64.99419 * 16 15 14 19 19 N 5.55179 * 133.48183 * 149.70316 * 2 1 3 20 20 C 1.53000 * 109.47280 * 184.99523 * 16 15 14 21 21 C 1.50700 * 109.47289 * 174.99906 * 20 16 15 22 22 H 1.07997 * 120.00157 * 0.02562 * 21 20 16 23 23 C 1.37874 * 120.00011 * 180.02562 * 21 20 16 24 24 N 1.31519 * 119.99819 * 359.72682 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47075 * 60.00245 * 25 23 21 27 27 H 1.48499 * 109.47207 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47277 * 300.00077 * 25 23 21 29 29 C 1.33359 * 117.94472 * 85.59477 * 8 7 3 30 30 O 1.21292 * 118.24393 * 357.77632 * 29 8 7 31 31 H 1.08994 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46854 * 300.00376 * 1 2 3 33 33 H 1.09000 * 109.46944 * 60.00106 * 1 2 3 34 34 H 1.08996 * 109.47158 * 239.99880 * 2 1 3 35 35 H 1.09000 * 109.46944 * 119.99894 * 2 1 3 36 36 H 1.08005 * 125.83543 * 180.02562 * 5 4 3 37 37 H 1.07992 * 126.08884 * 180.27531 * 6 5 4 38 38 H 1.08999 * 109.30319 * 78.75575 * 9 8 7 39 39 H 1.09002 * 109.13349 * 319.28312 * 9 8 7 40 40 H 1.09000 * 109.60177 * 189.48860 * 10 9 8 41 41 H 1.09001 * 109.73898 * 69.08755 * 10 9 8 42 42 H 1.09001 * 109.67812 * 307.79794 * 11 10 9 43 43 H 1.09000 * 109.67705 * 187.26315 * 11 10 9 44 44 H 1.00892 * 111.00071 * 81.04632 * 14 12 11 45 45 H 1.08994 * 109.47898 * 59.99814 * 15 14 12 46 46 H 1.09006 * 109.46613 * 299.99229 * 15 14 12 47 47 H 1.09003 * 109.46758 * 54.99654 * 20 16 15 48 48 H 1.09002 * 109.47082 * 294.99873 * 20 16 15 49 49 H 0.97007 * 119.99749 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1927 2.1938 -1.1275 5 6 2.6440 3.3566 -0.7321 6 6 2.7688 3.3294 0.6597 7 6 2.3816 2.0970 1.0887 8 7 2.3574 1.6550 2.4113 9 6 1.1752 1.9535 3.2098 10 6 1.4921 1.8328 4.7009 11 6 2.1688 0.4798 4.9511 12 6 3.5443 0.4953 4.2797 13 1 4.2098 1.1581 4.8330 14 7 4.1012 -0.8640 4.2767 15 6 5.5685 -0.8316 4.2119 16 6 6.1107 -2.2623 4.2113 17 1 5.7257 -2.7972 5.0795 18 6 5.6816 -2.9492 2.9821 19 7 5.3504 -3.4782 2.0322 20 6 7.6392 -2.2285 4.2696 21 6 8.1684 -3.6342 4.3928 22 1 7.4831 -4.4682 4.4258 23 6 9.5274 -3.8554 4.4634 24 7 10.3622 -2.8401 4.4179 25 14 10.1834 -5.5977 4.6169 26 1 9.7509 -6.3948 3.4410 27 1 11.6670 -5.5649 4.6733 28 1 9.6539 -6.2185 5.8577 29 6 3.4173 0.9855 2.8660 30 8 4.3274 0.7604 2.0964 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.8762 4.1955 -1.3715 37 1 3.1130 4.1410 1.2835 38 1 0.3804 1.2535 2.9525 39 1 0.8447 2.9693 2.9928 40 1 0.5686 1.8918 5.2770 41 1 2.1624 2.6381 5.0013 42 1 1.5615 -0.3187 4.5249 43 1 2.2855 0.3204 6.0230 44 1 3.7178 -1.4102 3.5199 45 1 5.9587 -0.2960 5.0773 46 1 5.8807 -0.3240 3.2992 47 1 7.9570 -1.6436 5.1328 48 1 8.0275 -1.7726 3.3588 49 1 11.3183 -2.9957 4.4679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570897905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:43 Heat of formation + Delta-G solvation = 70.928489 kcal Electronic energy + Delta-G solvation = -30799.252242 eV Core-core repulsion = 26763.085381 eV Total energy + Delta-G solvation = -4036.166860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99592 -40.42422 -37.36952 -36.90667 -35.57481 -34.70754 -33.87997 -32.92685 -31.40433 -29.78695 -29.19418 -28.88600 -26.28456 -24.48465 -24.04396 -23.33621 -22.51461 -21.80556 -21.32434 -20.91304 -19.08880 -17.86056 -17.39179 -16.68890 -16.45456 -16.05019 -15.91654 -15.48596 -15.09035 -14.93850 -14.76852 -14.52026 -14.29353 -14.16742 -13.84591 -13.64047 -13.33821 -13.10517 -12.95969 -12.80010 -12.63604 -12.41423 -12.22825 -12.11372 -11.90090 -11.75438 -11.65412 -11.55813 -11.32164 -11.21562 -11.01085 -10.97087 -10.69923 -10.54608 -10.32862 -10.24258 -9.60489 -9.52134 -9.40192 -9.22032 -8.77531 -8.48032 -8.42208 -6.06654 -4.09993 1.53476 1.91935 2.24895 2.59597 2.70154 3.32593 3.36979 3.40357 3.61269 3.64586 3.93383 4.19580 4.24882 4.26924 4.42396 4.44767 4.54061 4.64145 4.73858 4.82638 4.88613 4.94801 4.98874 5.02749 5.18483 5.25793 5.30544 5.31221 5.38356 5.40003 5.45016 5.51002 5.65729 5.67598 5.76945 5.80373 5.86546 5.90060 6.13035 6.35223 6.42553 6.56331 6.74631 6.86148 6.96762 7.15788 7.46014 7.48664 7.57744 7.80103 7.87966 8.25620 8.44269 8.94210 9.55085 11.04221 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002634 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.948896 B =10629.007438 C =11181.317266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.360 5.360 4 N -0.282 5.282 5 C 0.050 3.950 6 C -0.258 4.258 7 C 0.301 3.699 8 N -0.545 5.545 9 C 0.115 3.885 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.082 3.918 13 H 0.118 0.882 14 N -0.659 5.659 15 C 0.056 3.944 16 C 0.009 3.991 17 H 0.110 0.890 18 C 0.241 3.759 19 N -0.476 5.476 20 C 0.033 3.967 21 C -0.527 4.527 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.891 5.891 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.275 1.275 29 C 0.486 3.514 30 O -0.515 6.515 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.149 0.851 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.341 0.659 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.025 0.975 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.825 15.410 0.767 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.145 5.145 4 N -0.104 5.104 5 C -0.135 4.135 6 C -0.289 4.289 7 C 0.084 3.916 8 N -0.280 5.280 9 C -0.007 4.007 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.032 4.032 13 H 0.136 0.864 14 N -0.289 5.289 15 C -0.074 4.074 16 C -0.013 4.013 17 H 0.128 0.872 18 C -0.076 4.076 19 N -0.153 5.153 20 C -0.005 4.005 21 C -0.565 4.565 22 H 0.074 0.926 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.200 1.200 29 C 0.273 3.727 30 O -0.387 6.387 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.166 0.834 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.159 0.841 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.043 0.957 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.016 13.559 -1.329 27.611 hybrid contribution 1.043 -0.060 0.106 1.050 sum -22.973 13.499 -1.224 26.673 Atomic orbital electron populations 1.22159 0.93929 1.03224 1.02942 1.21639 0.95178 0.78064 1.04603 1.49088 1.49680 1.11963 1.03761 1.77423 1.23114 1.03070 1.06827 1.23662 0.99056 0.96143 0.94594 1.21190 1.14279 0.97798 0.95633 1.17845 1.01381 0.91205 0.81184 1.44746 1.19190 1.56701 1.07318 1.21612 0.85883 1.01936 0.91254 1.21909 1.02670 0.98758 0.93882 1.21701 0.93875 0.96796 1.02673 1.21716 0.98933 0.92770 0.89761 0.86386 1.61001 1.08189 1.08986 1.50733 1.22342 0.85141 0.96860 1.03021 1.19304 1.00981 0.92050 0.88974 0.87240 1.29314 0.91141 0.92719 0.94388 1.81036 1.11857 1.10330 1.12100 1.19149 0.84268 0.98294 0.98817 1.21099 0.91873 0.92237 1.51281 0.92578 1.24954 0.97035 0.97010 0.94969 1.69938 1.02826 1.30291 1.49913 0.86653 0.77739 0.84889 0.78779 1.20296 1.21186 1.20014 1.22072 0.80998 0.77112 0.92498 1.90844 1.37217 1.53874 1.56810 0.90311 0.92327 0.91393 0.88579 0.89525 0.79679 0.83363 0.91530 0.90012 0.88879 0.90292 0.90855 0.89062 0.84075 0.88926 0.92246 0.94204 0.95669 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.13 1.39 7.12 -4.04 -0.03 1.36 16 3 N -0.36 -4.66 3.62 -60.39 -0.22 -4.88 16 4 N -0.28 -3.81 12.56 30.60 0.38 -3.43 16 5 C 0.05 0.57 12.01 -17.40 -0.21 0.36 16 6 C -0.26 -2.97 10.84 -39.78 -0.43 -3.40 16 7 C 0.30 3.71 5.22 -153.15 -0.80 2.91 16 8 N -0.54 -5.60 2.80 -116.62 -0.33 -5.93 16 9 C 0.11 0.70 6.35 -4.49 -0.03 0.68 16 10 C -0.13 -0.60 6.02 -26.60 -0.16 -0.76 16 11 C -0.11 -0.73 5.64 -26.52 -0.15 -0.88 16 12 C 0.08 0.83 2.73 -69.08 -0.19 0.64 16 13 H 0.12 1.11 7.80 -51.93 -0.40 0.71 16 14 N -0.66 -8.46 6.15 -108.18 -0.66 -9.12 16 15 C 0.06 0.87 4.80 -3.82 -0.02 0.85 16 16 C 0.01 0.17 2.42 -93.41 -0.23 -0.06 16 17 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 18 C 0.24 5.13 12.98 -20.74 -0.27 4.86 16 19 N -0.48 -10.92 18.54 42.18 0.78 -10.14 16 20 C 0.03 0.80 4.42 -27.88 -0.12 0.67 16 21 C -0.53 -14.31 8.60 -34.44 -0.30 -14.60 16 22 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 25 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.49 6.16 6.90 -11.87 -0.08 6.08 16 30 O -0.52 -9.13 14.60 5.55 0.08 -9.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.42 7.82 -51.92 -0.41 0.01 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.00 7.98 -51.93 -0.41 0.59 16 36 H 0.19 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.07 0.36 7.82 -51.93 -0.41 -0.05 16 39 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.34 4.86 7.54 -39.30 -0.30 4.56 16 45 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.06 1.08 6.43 -51.93 -0.33 0.74 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 409.09 15.07 6.16 6.16 Total: -1.00 -35.43 409.09 -8.51 -43.94 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.70 Total: 1.63 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.73 Total: -0.53 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.69 Total: -58.78 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.43 -8.51 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.871 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds