Wall clock time and date at job start Wed Apr 1 2020 04:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47125 * 2 1 4 4 N 1.40075 * 126.04828 * 275.40090 * 3 2 1 5 5 C 1.30846 * 108.37399 * 180.02562 * 4 3 2 6 6 C 1.39760 * 108.32809 * 359.77711 * 5 4 3 7 7 C 1.35263 * 126.05007 * 95.44604 * 3 2 1 8 8 N 1.39477 * 126.21503 * 359.92047 * 7 3 2 9 9 C 1.45749 * 117.95035 * 265.59901 * 8 7 3 10 10 C 1.52917 * 110.48768 * 199.07249 * 9 8 7 11 11 C 1.53334 * 108.67542 * 309.24379 * 10 9 8 12 12 C 1.53069 * 108.42536 * 67.53180 * 11 10 9 13 13 H 1.09006 * 109.40389 * 71.14093 * 12 11 10 14 14 N 1.46902 * 109.40201 * 190.97199 * 12 11 10 15 15 C 1.46905 * 110.99673 * 205.00345 * 14 12 11 16 16 C 1.52998 * 109.46851 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47500 * 304.99796 * 16 15 14 18 18 C 1.47203 * 109.47530 * 64.99419 * 16 15 14 19 19 N 5.55179 * 133.48183 * 149.70316 * 2 1 3 20 20 C 1.53000 * 109.47280 * 184.99523 * 16 15 14 21 21 C 1.50700 * 109.47289 * 174.99906 * 20 16 15 22 22 H 1.07997 * 120.00157 * 0.02562 * 21 20 16 23 23 C 1.37874 * 120.00011 * 180.02562 * 21 20 16 24 24 N 1.31519 * 119.99819 * 359.72682 * 23 21 20 25 25 Si 1.86800 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47075 * 60.00245 * 25 23 21 27 27 H 1.48499 * 109.47207 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47277 * 300.00077 * 25 23 21 29 29 C 1.33359 * 117.94472 * 85.59477 * 8 7 3 30 30 O 1.21292 * 118.24393 * 357.77632 * 29 8 7 31 31 H 1.08994 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46854 * 300.00376 * 1 2 3 33 33 H 1.09000 * 109.46944 * 60.00106 * 1 2 3 34 34 H 1.08996 * 109.47158 * 239.99880 * 2 1 3 35 35 H 1.09000 * 109.46944 * 119.99894 * 2 1 3 36 36 H 1.08005 * 125.83543 * 180.02562 * 5 4 3 37 37 H 1.07992 * 126.08884 * 180.27531 * 6 5 4 38 38 H 1.08999 * 109.30319 * 78.75575 * 9 8 7 39 39 H 1.09002 * 109.13349 * 319.28312 * 9 8 7 40 40 H 1.09000 * 109.60177 * 189.48860 * 10 9 8 41 41 H 1.09001 * 109.73898 * 69.08755 * 10 9 8 42 42 H 1.09001 * 109.67812 * 307.79794 * 11 10 9 43 43 H 1.09000 * 109.67705 * 187.26315 * 11 10 9 44 44 H 1.00892 * 111.00071 * 81.04632 * 14 12 11 45 45 H 1.08994 * 109.47898 * 59.99814 * 15 14 12 46 46 H 1.09006 * 109.46613 * 299.99229 * 15 14 12 47 47 H 1.09003 * 109.46758 * 54.99654 * 20 16 15 48 48 H 1.09002 * 109.47082 * 294.99873 * 20 16 15 49 49 H 0.97007 * 119.99749 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1927 2.1938 -1.1275 5 6 2.6440 3.3566 -0.7321 6 6 2.7688 3.3294 0.6597 7 6 2.3816 2.0970 1.0887 8 7 2.3574 1.6550 2.4113 9 6 1.1752 1.9535 3.2098 10 6 1.4921 1.8328 4.7009 11 6 2.1688 0.4798 4.9511 12 6 3.5443 0.4953 4.2797 13 1 4.2098 1.1581 4.8330 14 7 4.1012 -0.8640 4.2767 15 6 5.5685 -0.8316 4.2119 16 6 6.1107 -2.2623 4.2113 17 1 5.7257 -2.7972 5.0795 18 6 5.6816 -2.9492 2.9821 19 7 5.3504 -3.4782 2.0322 20 6 7.6392 -2.2285 4.2696 21 6 8.1684 -3.6342 4.3928 22 1 7.4831 -4.4682 4.4258 23 6 9.5274 -3.8554 4.4634 24 7 10.3622 -2.8401 4.4179 25 14 10.1834 -5.5977 4.6169 26 1 9.7509 -6.3948 3.4410 27 1 11.6670 -5.5649 4.6733 28 1 9.6539 -6.2185 5.8577 29 6 3.4173 0.9855 2.8660 30 8 4.3274 0.7604 2.0964 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.8762 4.1955 -1.3715 37 1 3.1130 4.1410 1.2835 38 1 0.3804 1.2535 2.9525 39 1 0.8447 2.9693 2.9928 40 1 0.5686 1.8918 5.2770 41 1 2.1624 2.6381 5.0013 42 1 1.5615 -0.3187 4.5249 43 1 2.2855 0.3204 6.0230 44 1 3.7178 -1.4102 3.5199 45 1 5.9587 -0.2960 5.0773 46 1 5.8807 -0.3240 3.2992 47 1 7.9570 -1.6436 5.1328 48 1 8.0275 -1.7726 3.3588 49 1 11.3183 -2.9957 4.4679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570897905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:42 Heat of formation + Delta-G solvation = 47.706089 kcal Electronic energy + Delta-G solvation = -30800.259240 eV Core-core repulsion = 26763.085381 eV Total energy + Delta-G solvation = -4037.173859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.87240 -41.33563 -38.81567 -37.76199 -36.84136 -35.64683 -35.50176 -34.31352 -32.81375 -30.60106 -30.06384 -29.95165 -27.87105 -25.34144 -24.96611 -24.38794 -23.63283 -23.49303 -22.20378 -21.71219 -19.88724 -18.72422 -18.55565 -18.42577 -18.03889 -16.98241 -16.89799 -16.55804 -16.43118 -15.95318 -15.75935 -15.54278 -15.23103 -15.01915 -14.86567 -14.65353 -14.45260 -14.38436 -14.22402 -14.03786 -13.96735 -13.59846 -13.55985 -13.12761 -13.10647 -12.91401 -12.77052 -12.53417 -12.49659 -12.42777 -12.37489 -12.24862 -12.05411 -11.94084 -11.74790 -11.44979 -11.24653 -11.11082 -10.56955 -10.50335 -10.23340 -9.69687 -9.55339 -8.20774 -6.29963 0.61999 1.05884 1.34417 1.39470 1.41729 1.48799 1.72163 1.87231 1.89688 1.91480 2.39991 2.96030 3.13565 3.21556 3.36796 3.41163 3.78441 3.85015 3.89556 3.97696 4.02868 4.10282 4.11721 4.28128 4.31286 4.40199 4.44215 4.48534 4.60110 4.65098 4.66845 4.73317 4.81609 4.91668 4.95546 4.98306 5.00952 5.05307 5.11639 5.24328 5.36755 5.43767 5.58178 5.59270 5.74966 5.78374 5.90158 5.99275 6.14268 6.17196 6.58573 6.70395 6.84405 6.88999 7.38639 8.90218 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002634 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.948896 B =10629.007438 C =11181.317266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 N -0.372 5.372 4 N -0.317 5.317 5 C 0.051 3.949 6 C -0.268 4.268 7 C 0.286 3.714 8 N -0.535 5.535 9 C 0.105 3.895 10 C -0.123 4.123 11 C -0.104 4.104 12 C 0.082 3.918 13 H 0.130 0.870 14 N -0.649 5.649 15 C 0.069 3.931 16 C 0.020 3.980 17 H 0.133 0.867 18 C 0.250 3.750 19 N -0.508 5.508 20 C 0.040 3.960 21 C -0.540 4.540 22 H 0.056 0.944 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.951 3.049 26 H -0.283 1.283 27 H -0.282 1.282 28 H -0.258 1.258 29 C 0.485 3.515 30 O -0.577 6.577 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.218 0.782 37 H 0.166 0.834 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.332 0.668 45 H 0.115 0.885 46 H 0.030 0.970 47 H 0.040 0.960 48 H -0.010 1.010 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.015 15.993 2.976 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.000 4.000 3 N -0.157 5.157 4 N -0.140 5.140 5 C -0.133 4.133 6 C -0.299 4.299 7 C 0.069 3.931 8 N -0.268 5.268 9 C -0.015 4.015 10 C -0.161 4.161 11 C -0.142 4.142 12 C -0.031 4.031 13 H 0.147 0.853 14 N -0.277 5.277 15 C -0.061 4.061 16 C -0.001 4.001 17 H 0.151 0.849 18 C -0.066 4.066 19 N -0.186 5.186 20 C 0.001 3.999 21 C -0.578 4.578 22 H 0.075 0.925 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.777 3.223 26 H -0.209 1.209 27 H -0.207 1.207 28 H -0.183 1.183 29 C 0.273 3.727 30 O -0.454 6.454 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.183 0.817 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.008 0.992 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.274 14.160 0.909 29.860 hybrid contribution 1.706 -0.170 -0.620 1.823 sum -24.568 13.990 0.289 28.273 Atomic orbital electron populations 1.22069 0.91254 1.04422 1.03113 1.21728 0.97327 0.77502 1.03397 1.49260 1.50173 1.12374 1.03885 1.77365 1.24706 1.04153 1.07769 1.24256 0.97690 0.96270 0.95134 1.21523 1.14130 0.98190 0.96054 1.18236 1.01331 0.91605 0.81966 1.44879 1.19690 1.55347 1.06853 1.22000 0.84453 1.03103 0.91943 1.21933 1.04083 0.97452 0.92652 1.21714 0.91302 0.98192 1.03041 1.21982 1.01391 0.91151 0.88592 0.85268 1.61046 1.06088 1.10690 1.49865 1.22130 0.87199 0.94143 1.02596 1.19267 0.97853 0.94334 0.88689 0.84927 1.29792 0.90394 0.91960 0.94454 1.81025 1.12852 1.11672 1.13050 1.18963 0.87502 0.96493 0.96934 1.21518 0.92173 0.93657 1.50474 0.92546 1.25767 0.97562 1.00720 0.94895 1.70047 1.03073 1.32241 1.51092 0.85706 0.77295 0.80333 0.78992 1.20880 1.20699 1.18260 1.22539 0.80611 0.76493 0.93034 1.90827 1.39624 1.56460 1.58486 0.88546 0.91279 0.91944 0.89897 0.90623 0.76602 0.81673 0.90381 0.88597 0.85605 0.89674 0.90947 0.87387 0.85112 0.86674 0.95186 0.94171 0.99194 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.24 71.98 0.74 -1.52 16 2 C 0.12 2.78 7.12 86.38 0.62 3.39 16 3 N -0.37 -9.83 3.62 -344.99 -1.25 -11.08 16 4 N -0.32 -8.75 12.56 -57.09 -0.72 -9.47 16 5 C 0.05 1.13 12.01 85.21 1.02 2.16 16 6 C -0.27 -6.03 10.84 22.14 0.24 -5.79 16 7 C 0.29 7.00 5.22 131.32 0.68 7.69 16 8 N -0.53 -10.45 2.80 -642.05 -1.80 -12.25 16 9 C 0.11 0.99 6.35 86.49 0.55 1.54 16 10 C -0.12 -0.60 6.02 30.68 0.18 -0.42 16 11 C -0.10 -1.01 5.64 30.73 0.17 -0.84 16 12 C 0.08 1.53 2.73 44.03 0.12 1.65 16 13 H 0.13 2.14 7.80 -2.38 -0.02 2.13 16 14 N -0.65 -15.93 6.15 -496.18 -3.05 -18.98 16 15 C 0.07 2.15 4.80 86.30 0.41 2.56 16 16 C 0.02 0.77 2.42 -12.60 -0.03 0.74 16 17 H 0.13 4.45 8.14 -2.39 -0.02 4.43 16 18 C 0.25 10.80 12.98 89.44 1.16 11.96 16 19 N -0.51 -23.81 18.54 20.01 0.37 -23.44 16 20 C 0.04 1.94 4.42 29.85 0.13 2.07 16 21 C -0.54 -29.46 8.60 25.60 0.22 -29.24 16 22 H 0.06 3.01 7.59 -2.91 -0.02 2.99 16 23 C 0.01 0.53 5.46 84.65 0.46 0.99 16 24 N -0.92 -54.70 13.29 21.45 0.28 -54.42 16 25 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 26 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 29 C 0.48 12.14 6.90 87.71 0.61 12.74 16 30 O -0.58 -21.28 14.60 -3.07 -0.04 -21.32 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.88 7.82 -2.38 -0.02 0.86 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 1.84 7.98 -2.39 -0.02 1.83 16 36 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.08 0.60 7.82 -2.39 -0.02 0.58 16 39 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 40 H 0.13 -0.08 8.14 -2.39 -0.02 -0.09 16 41 H 0.08 0.38 8.12 -2.39 -0.02 0.36 16 42 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 43 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.33 9.38 7.54 -89.70 -0.68 8.70 16 45 H 0.12 3.04 8.05 -2.39 -0.02 3.02 16 46 H 0.03 1.12 6.43 -2.38 -0.02 1.11 16 47 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 48 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 49 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -80.12 409.09 3.40 -76.73 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.28 Total: 18.20 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 7.29 Total: 9.69 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.16 Total: -129.63 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -80.12 3.40 -76.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570897905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.436 kcal (2) G-P(sol) polarization free energy of solvation -80.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds