Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47505 * 2 1 4 4 C 1.52992 * 109.47169 * 120.00216 * 2 1 3 5 5 N 1.46904 * 109.47347 * 178.38230 * 4 2 1 6 6 C 1.46898 * 110.99875 * 159.51863 * 5 4 2 7 7 C 1.50704 * 109.47137 * 287.56678 * 6 5 4 8 8 H 1.08006 * 119.99304 * 4.74008 * 7 6 5 9 9 C 1.37868 * 120.00259 * 184.74248 * 7 6 5 10 10 N 1.31513 * 120.00176 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00123 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47245 * 89.99675 * 11 9 7 13 13 H 1.48502 * 109.47246 * 209.99706 * 11 9 7 14 14 H 1.48503 * 109.47207 * 329.99464 * 11 9 7 15 15 C 1.46900 * 110.99836 * 283.46860 * 5 4 2 16 16 N 1.46496 * 109.47118 * 109.80491 * 15 5 4 17 17 N 1.28384 * 119.11582 * 283.57496 * 16 15 5 18 18 C 1.31191 * 122.30737 * 180.25020 * 17 16 15 19 19 C 1.48416 * 119.87133 * 179.74591 * 18 17 16 20 20 C 1.40876 * 126.22499 * 179.42144 * 19 18 17 21 21 N 1.30663 * 108.08679 * 179.81484 * 20 19 18 22 22 N 1.40013 * 108.53275 * 0.44032 * 21 20 19 23 23 C 1.46506 * 125.88141 * 179.75253 * 22 21 20 24 24 C 1.34787 * 108.22416 * 359.71274 * 22 21 20 25 25 C 1.41438 * 120.25292 * 359.47162 * 18 17 16 26 26 C 1.36356 * 118.24674 * 0.25313 * 25 18 17 27 27 C 1.34623 * 119.10853 * 103.29559 * 16 15 5 28 28 O 1.22059 * 120.24857 * 0.02562 * 27 16 15 29 29 H 1.08998 * 109.47018 * 300.00143 * 1 2 3 30 30 H 1.09003 * 109.46981 * 59.99837 * 1 2 3 31 31 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47233 * 240.00300 * 2 1 3 33 33 H 1.09004 * 109.47191 * 64.38845 * 3 2 1 34 34 H 1.08998 * 109.47670 * 184.38460 * 3 2 1 35 35 H 1.09004 * 109.47476 * 304.39252 * 3 2 1 36 36 H 1.09002 * 109.47242 * 58.38329 * 4 2 1 37 37 H 1.08993 * 109.47691 * 298.38312 * 4 2 1 38 38 H 1.08994 * 109.47658 * 47.56974 * 6 5 4 39 39 H 1.09006 * 109.46958 * 167.57089 * 6 5 4 40 40 H 0.97002 * 120.00139 * 180.02562 * 10 9 7 41 41 H 1.09008 * 109.47445 * 349.80584 * 15 5 4 42 42 H 1.09004 * 109.47358 * 229.80535 * 15 5 4 43 43 H 1.07999 * 125.95850 * 359.96981 * 20 19 18 44 44 H 1.08997 * 109.47070 * 269.95053 * 23 22 21 45 45 H 1.08992 * 109.47403 * 29.95812 * 23 22 21 46 46 H 1.08997 * 109.46640 * 149.96044 * 23 22 21 47 47 H 1.08005 * 126.19204 * 180.02562 * 24 22 21 48 48 H 1.07997 * 120.87245 * 180.27471 * 25 18 17 49 49 H 1.08007 * 121.04765 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5085 -0.7552 1.2298 6 6 4.0476 -0.9817 2.5774 7 6 3.8669 0.2638 3.4065 8 1 3.3307 1.1091 3.0012 9 6 4.3861 0.3240 4.6823 10 7 5.0387 -0.7056 5.1760 11 14 4.1615 1.8674 5.7102 12 1 2.9048 1.7616 6.4941 13 1 5.3120 2.0165 6.6373 14 1 4.0893 3.0512 4.8166 15 6 3.9992 -1.7711 0.2890 16 7 4.6113 -1.1112 -0.8668 17 7 3.8534 -0.5900 -1.7625 18 6 4.3343 0.0115 -2.8245 19 6 3.4079 0.5904 -3.8292 20 6 3.7762 1.2714 -5.0062 21 7 2.6833 1.6248 -5.6292 22 7 1.5834 1.1962 -4.8763 23 6 0.1744 1.3982 -5.2229 24 6 2.0445 0.5650 -3.7782 25 6 5.7322 0.1154 -3.0129 26 6 6.5527 -0.4279 -2.0690 27 6 5.9535 -1.0626 -0.9583 28 8 6.6477 -1.5633 -0.0880 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.7424 1.9331 0.9267 34 1 3.1272 1.4435 -0.0786 35 1 1.6140 1.9786 -0.8480 36 1 1.6532 -1.7402 1.2637 37 1 1.7006 -0.1911 2.1389 38 1 3.5174 -1.8104 3.0464 39 1 5.1087 -1.2216 2.5086 40 1 5.4036 -0.6634 6.0737 41 1 3.1661 -2.3898 -0.0450 42 1 4.7409 -2.3974 0.7847 43 1 4.7857 1.4651 -5.3373 44 1 -0.1731 2.3396 -4.7973 45 1 0.0676 1.4282 -6.3071 46 1 -0.4197 0.5771 -4.8218 47 1 1.4435 0.1195 -2.9991 48 1 6.1390 0.6122 -3.8812 49 1 7.6270 -0.3742 -2.1672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788368784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = 118.564814 kcal Electronic energy + Delta-G solvation = -31598.550905 eV Core-core repulsion = 27564.449711 eV Total energy + Delta-G solvation = -4034.101194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74717 -41.12404 -37.54160 -37.34837 -34.82546 -33.92082 -33.24731 -32.24549 -31.62061 -29.55459 -27.90028 -27.11033 -26.67770 -26.10325 -24.49094 -24.05166 -23.05376 -21.11288 -21.01518 -20.73698 -19.36896 -17.87958 -17.72147 -16.66826 -16.27012 -16.18810 -15.86706 -15.62330 -15.14252 -14.70230 -14.59618 -14.49180 -14.03378 -13.72056 -13.43814 -13.33931 -13.22493 -13.17905 -12.92604 -12.67891 -12.63194 -12.35310 -12.25700 -11.86076 -11.65039 -11.35075 -11.22473 -11.00477 -10.93840 -10.85629 -10.75468 -10.48851 -10.41701 -10.24027 -9.94047 -9.72478 -9.65933 -9.33308 -9.23074 -9.10091 -8.43956 -7.68939 -7.48068 -6.01369 -4.02870 0.81050 1.43885 1.90229 2.25034 2.64780 2.88809 3.31874 3.38632 3.42872 3.86240 4.15089 4.30132 4.42685 4.66274 4.77919 4.81255 4.84763 4.85704 5.00241 5.10874 5.12884 5.32336 5.34467 5.40382 5.42991 5.45278 5.64007 5.66180 5.77795 5.86843 5.92005 5.97412 6.03745 6.18023 6.25795 6.26643 6.34575 6.39828 6.44098 6.48246 6.54820 6.74172 6.95063 6.97775 7.17765 7.24375 7.45311 7.75146 8.00621 8.04731 8.13099 8.44686 8.60668 9.03207 9.60700 11.09241 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.003649 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.620185 B = 7672.511181 C = 8940.743127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.121 4.121 4 C 0.070 3.930 5 N -0.537 5.537 6 C 0.196 3.804 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.267 3.733 16 N -0.319 5.319 17 N -0.202 5.202 18 C 0.119 3.881 19 C -0.174 4.174 20 C 0.070 3.930 21 N -0.298 5.298 22 N -0.374 5.374 23 C 0.101 3.899 24 C 0.095 3.905 25 C -0.061 4.061 26 C -0.189 4.189 27 C 0.477 3.523 28 O -0.529 6.529 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.023 0.977 37 H 0.085 0.915 38 H -0.006 1.006 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.187 0.813 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.182 0.818 48 H 0.144 0.856 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 1.299 -22.182 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.179 4.179 4 C -0.058 4.058 5 N -0.262 5.262 6 C 0.072 3.928 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.057 3.943 16 N -0.141 5.141 17 N -0.027 5.027 18 C -0.050 4.050 19 C -0.188 4.188 20 C -0.119 4.119 21 N -0.118 5.118 22 N -0.155 5.155 23 C -0.040 4.040 24 C -0.054 4.054 25 C -0.085 4.085 26 C -0.219 4.219 27 C 0.274 3.726 28 O -0.407 6.407 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.104 0.896 38 H 0.012 0.988 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.204 0.796 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.199 0.801 48 H 0.161 0.839 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.312 1.707 -22.170 24.106 hybrid contribution 0.831 0.000 1.466 1.686 sum -8.480 1.707 -20.704 22.438 Atomic orbital electron populations 1.21822 0.96457 1.00821 1.01110 1.21314 0.93671 0.97583 0.99444 1.21526 1.01895 0.94955 0.99492 1.22180 0.87012 0.97835 0.98738 1.61389 1.08005 1.45594 1.11181 1.19882 0.95491 0.96589 0.80876 1.21078 1.35095 1.00285 0.97881 0.91889 1.24961 0.95223 0.96419 0.97863 1.69955 1.36794 1.30002 1.16757 0.86522 0.77534 0.83459 0.80044 1.20764 1.21247 1.19861 1.22448 0.98387 0.89807 0.83695 1.47153 1.05206 1.43602 1.18147 1.70743 1.28399 1.05616 0.97941 1.19142 0.90895 1.02053 0.92890 1.18037 0.91164 1.11645 0.97947 1.23877 0.98128 0.96991 0.92858 1.77251 0.92462 1.22929 1.19191 1.48350 1.06602 1.43619 1.16959 1.21899 0.75632 1.03170 1.03347 1.22657 0.95083 0.96462 0.91194 1.22116 0.92636 0.94990 0.98760 1.22646 1.02108 1.02574 0.94583 1.18030 0.82574 0.83263 0.88696 1.91012 1.60454 1.47681 1.41510 0.92911 0.93510 0.93364 0.89726 0.93589 0.92049 0.94959 0.95833 0.89637 0.98826 0.94128 0.92886 0.90491 0.87292 0.79621 0.90520 0.89237 0.89268 0.80105 0.83858 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.10 -1.46 2.67 -90.63 -0.24 -1.71 16 3 C -0.12 -1.94 8.96 37.16 0.33 -1.60 16 4 C 0.07 1.26 4.08 -3.83 -0.02 1.24 16 5 N -0.54 -11.14 3.86 -239.98 -0.93 -12.07 16 6 C 0.20 5.05 4.54 -4.97 -0.02 5.03 16 7 C -0.50 -14.11 8.42 -34.44 -0.29 -14.40 16 8 H 0.06 1.75 7.59 -52.48 -0.40 1.35 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 11 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.27 4.89 5.51 -63.32 -0.35 4.54 16 16 N -0.32 -5.50 3.46 -66.33 -0.23 -5.73 16 17 N -0.20 -2.95 7.93 33.48 0.27 -2.68 16 18 C 0.12 1.49 6.85 -82.73 -0.57 0.93 16 19 C -0.17 -1.90 6.06 -105.35 -0.64 -2.54 16 20 C 0.07 0.67 11.43 -17.05 -0.19 0.48 16 21 N -0.30 -3.23 12.54 30.81 0.39 -2.84 16 22 N -0.37 -3.49 4.00 -67.90 -0.27 -3.76 16 23 C 0.10 0.53 11.46 59.85 0.69 1.21 16 24 C 0.10 0.95 11.20 -16.89 -0.19 0.77 16 25 C -0.06 -0.68 9.66 -39.04 -0.38 -1.06 16 26 C -0.19 -2.61 10.12 -39.11 -0.40 -3.00 16 27 C 0.48 8.77 7.47 -15.18 -0.11 8.66 16 28 O -0.53 -11.92 16.45 4.86 0.08 -11.84 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.18 4.83 -51.93 -0.25 0.93 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.39 7.67 -51.93 -0.40 -0.01 16 37 H 0.09 1.73 7.00 -51.93 -0.36 1.37 16 38 H -0.01 -0.16 8.05 -51.93 -0.42 -0.58 16 39 H 0.04 1.18 7.71 -51.93 -0.40 0.78 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 1.20 7.31 -51.92 -0.38 0.82 16 42 H 0.11 2.20 6.19 -51.93 -0.32 1.88 16 43 H 0.19 1.17 7.37 -52.49 -0.39 0.79 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.18 1.63 7.48 -52.48 -0.39 1.23 16 48 H 0.14 1.00 7.13 -52.49 -0.37 0.62 16 49 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -35.15 403.02 -8.46 -43.61 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.42 Total: -0.22 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.13 Total: -1.28 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.04 Total: -53.27 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.15 -8.46 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788368784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.176 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds