Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47505 * 2 1 4 4 C 1.52992 * 109.47169 * 120.00216 * 2 1 3 5 5 N 1.46904 * 109.47347 * 178.38230 * 4 2 1 6 6 C 1.46898 * 110.99875 * 159.51863 * 5 4 2 7 7 C 1.50704 * 109.47137 * 287.56678 * 6 5 4 8 8 H 1.08006 * 119.99304 * 4.74008 * 7 6 5 9 9 C 1.37868 * 120.00259 * 184.74248 * 7 6 5 10 10 N 1.31513 * 120.00176 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00123 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47245 * 89.99675 * 11 9 7 13 13 H 1.48502 * 109.47246 * 209.99706 * 11 9 7 14 14 H 1.48503 * 109.47207 * 329.99464 * 11 9 7 15 15 C 1.46900 * 110.99836 * 283.46860 * 5 4 2 16 16 N 1.46496 * 109.47118 * 109.80491 * 15 5 4 17 17 N 1.28384 * 119.11582 * 283.57496 * 16 15 5 18 18 C 1.31191 * 122.30737 * 180.25020 * 17 16 15 19 19 C 1.48416 * 119.87133 * 179.74591 * 18 17 16 20 20 C 1.40876 * 126.22499 * 179.42144 * 19 18 17 21 21 N 1.30663 * 108.08679 * 179.81484 * 20 19 18 22 22 N 1.40013 * 108.53275 * 0.44032 * 21 20 19 23 23 C 1.46506 * 125.88141 * 179.75253 * 22 21 20 24 24 C 1.34787 * 108.22416 * 359.71274 * 22 21 20 25 25 C 1.41438 * 120.25292 * 359.47162 * 18 17 16 26 26 C 1.36356 * 118.24674 * 0.25313 * 25 18 17 27 27 C 1.34623 * 119.10853 * 103.29559 * 16 15 5 28 28 O 1.22059 * 120.24857 * 0.02562 * 27 16 15 29 29 H 1.08998 * 109.47018 * 300.00143 * 1 2 3 30 30 H 1.09003 * 109.46981 * 59.99837 * 1 2 3 31 31 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47233 * 240.00300 * 2 1 3 33 33 H 1.09004 * 109.47191 * 64.38845 * 3 2 1 34 34 H 1.08998 * 109.47670 * 184.38460 * 3 2 1 35 35 H 1.09004 * 109.47476 * 304.39252 * 3 2 1 36 36 H 1.09002 * 109.47242 * 58.38329 * 4 2 1 37 37 H 1.08993 * 109.47691 * 298.38312 * 4 2 1 38 38 H 1.08994 * 109.47658 * 47.56974 * 6 5 4 39 39 H 1.09006 * 109.46958 * 167.57089 * 6 5 4 40 40 H 0.97002 * 120.00139 * 180.02562 * 10 9 7 41 41 H 1.09008 * 109.47445 * 349.80584 * 15 5 4 42 42 H 1.09004 * 109.47358 * 229.80535 * 15 5 4 43 43 H 1.07999 * 125.95850 * 359.96981 * 20 19 18 44 44 H 1.08997 * 109.47070 * 269.95053 * 23 22 21 45 45 H 1.08992 * 109.47403 * 29.95812 * 23 22 21 46 46 H 1.08997 * 109.46640 * 149.96044 * 23 22 21 47 47 H 1.08005 * 126.19204 * 180.02562 * 24 22 21 48 48 H 1.07997 * 120.87245 * 180.27471 * 25 18 17 49 49 H 1.08007 * 121.04765 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5085 -0.7552 1.2298 6 6 4.0476 -0.9817 2.5774 7 6 3.8669 0.2638 3.4065 8 1 3.3307 1.1091 3.0012 9 6 4.3861 0.3240 4.6823 10 7 5.0387 -0.7056 5.1760 11 14 4.1615 1.8674 5.7102 12 1 2.9048 1.7616 6.4941 13 1 5.3120 2.0165 6.6373 14 1 4.0893 3.0512 4.8166 15 6 3.9992 -1.7711 0.2890 16 7 4.6113 -1.1112 -0.8668 17 7 3.8534 -0.5900 -1.7625 18 6 4.3343 0.0115 -2.8245 19 6 3.4079 0.5904 -3.8292 20 6 3.7762 1.2714 -5.0062 21 7 2.6833 1.6248 -5.6292 22 7 1.5834 1.1962 -4.8763 23 6 0.1744 1.3982 -5.2229 24 6 2.0445 0.5650 -3.7782 25 6 5.7322 0.1154 -3.0129 26 6 6.5527 -0.4279 -2.0690 27 6 5.9535 -1.0626 -0.9583 28 8 6.6477 -1.5633 -0.0880 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.7424 1.9331 0.9267 34 1 3.1272 1.4435 -0.0786 35 1 1.6140 1.9786 -0.8480 36 1 1.6532 -1.7402 1.2637 37 1 1.7006 -0.1911 2.1389 38 1 3.5174 -1.8104 3.0464 39 1 5.1087 -1.2216 2.5086 40 1 5.4036 -0.6634 6.0737 41 1 3.1661 -2.3898 -0.0450 42 1 4.7409 -2.3974 0.7847 43 1 4.7857 1.4651 -5.3373 44 1 -0.1731 2.3396 -4.7973 45 1 0.0676 1.4282 -6.3071 46 1 -0.4197 0.5771 -4.8218 47 1 1.4435 0.1195 -2.9991 48 1 6.1390 0.6122 -3.8812 49 1 7.6270 -0.3742 -2.1672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788368784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = 95.005407 kcal Electronic energy + Delta-G solvation = -31599.572518 eV Core-core repulsion = 27564.449711 eV Total energy + Delta-G solvation = -4035.122807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.88720 -41.95034 -39.06850 -38.69941 -35.96959 -35.47182 -34.30472 -33.84496 -32.67426 -30.59775 -29.42943 -28.36461 -27.82541 -27.21253 -26.01798 -25.19283 -24.46029 -22.72119 -21.84450 -21.62284 -20.67782 -19.01500 -18.90400 -18.33921 -17.59654 -17.46766 -17.15020 -16.85636 -16.32353 -16.17295 -15.70583 -15.52338 -15.26674 -15.15152 -14.75511 -14.49332 -14.29971 -14.20271 -14.02234 -13.86226 -13.64117 -13.58553 -13.31223 -13.23745 -13.03257 -12.87626 -12.73568 -12.64883 -12.55402 -12.22849 -12.09297 -11.75476 -11.70498 -11.58206 -11.47370 -11.39296 -11.09288 -10.65351 -10.53052 -10.36346 -10.08225 -9.24214 -8.74525 -8.22496 -6.32923 -0.26733 0.45869 1.10816 1.32368 1.35779 1.38201 1.49216 1.69882 1.93740 2.36214 2.73615 3.08186 3.11673 3.26633 3.49212 3.87869 3.91664 4.01053 4.02919 4.12825 4.16687 4.25353 4.30728 4.40609 4.43811 4.53537 4.61336 4.75845 4.78086 4.80451 4.83310 4.88547 4.94248 4.97332 4.98588 5.08859 5.13768 5.22817 5.24275 5.26278 5.31983 5.38802 5.60761 5.65975 5.66149 5.74173 5.99310 6.08926 6.29183 6.43747 6.71798 6.75628 6.81490 7.35770 7.42108 8.88335 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.003649 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.620185 B = 7672.511181 C = 8940.743127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.112 4.112 4 C 0.069 3.931 5 N -0.542 5.542 6 C 0.217 3.783 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.968 3.032 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.274 3.726 16 N -0.326 5.326 17 N -0.224 5.224 18 C 0.138 3.862 19 C -0.199 4.199 20 C 0.078 3.922 21 N -0.324 5.324 22 N -0.373 5.373 23 C 0.090 3.910 24 C 0.102 3.898 25 C -0.034 4.034 26 C -0.203 4.203 27 C 0.456 3.544 28 O -0.595 6.595 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.057 0.943 38 H -0.027 1.027 39 H -0.006 1.006 40 H 0.264 0.736 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.218 0.782 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.192 0.808 48 H 0.198 0.802 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 3.388 -25.469 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.169 4.169 4 C -0.058 4.058 5 N -0.267 5.267 6 C 0.091 3.909 7 C -0.554 4.554 8 H 0.079 0.921 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.064 3.936 16 N -0.145 5.145 17 N -0.047 5.047 18 C -0.031 4.031 19 C -0.213 4.213 20 C -0.110 4.110 21 N -0.144 5.144 22 N -0.153 5.153 23 C -0.050 4.050 24 C -0.049 4.049 25 C -0.057 4.057 26 C -0.233 4.233 27 C 0.256 3.744 28 O -0.478 6.478 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.076 0.924 38 H -0.009 1.009 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.131 0.869 47 H 0.209 0.791 48 H 0.215 0.785 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.572 3.816 -25.526 28.285 hybrid contribution 1.397 -0.602 2.249 2.715 sum -10.175 3.214 -23.277 25.606 Atomic orbital electron populations 1.21776 0.93604 1.02059 1.02160 1.21245 0.95814 0.96104 0.97608 1.21419 0.99767 0.96101 0.99614 1.22277 0.85105 0.98757 0.99694 1.61313 1.09811 1.46806 1.08744 1.19388 0.92698 0.95189 0.83648 1.21356 1.34866 1.00710 0.98455 0.92061 1.25906 0.94760 0.99802 0.99221 1.70100 1.37825 1.32280 1.17260 0.85407 0.77959 0.79179 0.78225 1.19210 1.20901 1.19278 1.22230 0.98182 0.89450 0.83772 1.46816 1.04957 1.44395 1.18360 1.70743 1.27812 1.07587 0.98597 1.19714 0.92240 0.99278 0.91861 1.18061 0.91410 1.13453 0.98405 1.24371 0.99348 0.95537 0.91759 1.77249 0.93196 1.23873 1.20117 1.48699 1.07689 1.42570 1.16339 1.22255 0.73842 1.04698 1.04188 1.22890 0.95126 0.95535 0.91373 1.22621 0.91533 0.92559 0.99009 1.22736 1.03445 1.03267 0.93809 1.18841 0.82826 0.83228 0.89486 1.90970 1.61696 1.51025 1.44129 0.93811 0.90512 0.92098 0.88604 0.95505 0.95378 0.92200 0.94599 0.92406 1.00915 0.98758 0.92718 0.87641 0.90459 0.76552 0.89557 0.88544 0.86931 0.79075 0.78535 0.80577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 2 C -0.09 -2.44 2.67 -10.80 -0.03 -2.47 16 3 C -0.11 -3.44 8.96 71.98 0.65 -2.80 16 4 C 0.07 2.53 4.08 86.30 0.35 2.88 16 5 N -0.54 -23.82 3.86 -913.16 -3.52 -27.34 16 6 C 0.22 12.08 4.54 85.56 0.39 12.47 16 7 C -0.52 -30.27 8.42 25.60 0.22 -30.05 16 8 H 0.06 3.54 7.59 -2.91 -0.02 3.52 16 9 C 0.00 0.06 5.46 84.65 0.46 0.53 16 10 N -0.93 -58.75 13.29 21.44 0.28 -58.46 16 11 Si 0.97 46.08 29.54 68.60 2.03 48.11 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.27 10.70 5.51 170.81 0.94 11.64 16 16 N -0.33 -11.59 3.46 -481.93 -1.67 -13.26 16 17 N -0.22 -6.30 7.93 -47.99 -0.38 -6.68 16 18 C 0.14 3.10 6.85 42.74 0.29 3.39 16 19 C -0.20 -3.61 6.06 -20.33 -0.12 -3.73 16 20 C 0.08 1.17 11.43 85.51 0.98 2.15 16 21 N -0.32 -5.81 12.54 -56.44 -0.71 -6.52 16 22 N -0.37 -5.53 4.00 -368.72 -1.48 -7.01 16 23 C 0.09 0.59 11.46 127.77 1.46 2.05 16 24 C 0.10 1.65 11.20 83.82 0.94 2.59 16 25 C -0.03 -0.64 9.66 22.62 0.22 -0.42 16 26 C -0.20 -5.46 10.12 22.57 0.23 -5.23 16 27 C 0.46 17.63 7.47 85.01 0.64 18.26 16 28 O -0.60 -29.29 16.45 -5.51 -0.09 -29.38 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 2.47 4.83 -2.39 -0.01 2.45 16 33 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.03 1.04 7.73 -2.39 -0.02 1.02 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.04 1.21 7.67 -2.39 -0.02 1.19 16 37 H 0.06 2.43 7.00 -2.39 -0.02 2.41 16 38 H -0.03 -1.56 8.05 -2.39 -0.02 -1.58 16 39 H -0.01 -0.37 7.71 -2.38 -0.02 -0.39 16 40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 41 H 0.11 3.38 7.31 -2.38 -0.02 3.37 16 42 H 0.08 3.49 6.19 -2.39 -0.01 3.47 16 43 H 0.22 1.55 7.37 -2.91 -0.02 1.53 16 44 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.19 2.64 7.48 -2.91 -0.02 2.62 16 48 H 0.20 1.60 7.13 -2.91 -0.02 1.58 16 49 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -84.19 403.02 3.69 -80.50 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.95 Total: 10.96 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 8.27 Total: 9.08 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.47 Total: -119.27 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.09 Total: -29.38 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -84.19 3.69 -80.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788368784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.507 kcal (2) G-P(sol) polarization free energy of solvation -84.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds