Wall clock time and date at job start Wed Apr 1 2020 04:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99805 * 2 1 4 4 C 1.53002 * 109.46564 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46762 * 174.80679 * 4 3 2 6 6 C 1.36737 * 127.14044 * 83.15115 * 5 4 3 7 7 C 1.50700 * 126.34545 * 359.96332 * 6 5 4 8 8 C 1.50699 * 109.47315 * 95.36007 * 7 6 5 9 9 C 1.38226 * 119.62065 * 121.76364 * 8 7 6 10 10 C 1.38624 * 119.16455 * 179.97438 * 9 8 7 11 11 C 1.38679 * 118.41719 * 0.02562 * 10 9 8 12 12 C 1.38175 * 119.16260 * 359.97438 * 11 10 9 13 13 N 1.31850 * 119.61848 * 301.49589 * 8 7 6 14 14 N 1.30296 * 107.30398 * 179.83638 * 6 5 4 15 15 N 1.28523 * 110.05635 * 0.43928 * 14 6 5 16 16 C 1.31222 * 109.85872 * 359.71841 * 15 14 6 17 17 N 1.38574 * 126.47080 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00328 * 256.28771 * 17 16 15 19 19 C 1.46904 * 111.00354 * 20.24620 * 17 16 15 20 20 H 1.08999 * 109.46766 * 299.99763 * 19 17 16 21 21 C 1.53001 * 109.47010 * 59.99500 * 19 17 16 22 22 C 1.50700 * 109.47420 * 179.97438 * 19 17 16 23 23 H 1.08006 * 119.99766 * 359.97438 * 22 19 17 24 24 C 1.37873 * 120.00203 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99555 * 359.97438 * 24 22 19 26 26 Si 1.86794 * 119.99999 * 179.97438 * 24 22 19 27 27 H 1.48495 * 109.47294 * 90.00010 * 26 24 22 28 28 H 1.48503 * 109.46988 * 210.00004 * 26 24 22 29 29 H 1.48495 * 109.47268 * 329.99441 * 26 24 22 30 30 H 1.09001 * 109.46796 * 299.99633 * 1 2 3 31 31 H 1.08998 * 109.47122 * 59.99181 * 1 2 3 32 32 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47454 * 300.00348 * 3 2 1 34 34 H 1.08998 * 109.46690 * 60.00609 * 3 2 1 35 35 H 1.09006 * 109.47137 * 294.80037 * 4 3 2 36 36 H 1.08993 * 109.47379 * 54.80717 * 4 3 2 37 37 H 1.09011 * 109.46924 * 215.36027 * 7 6 5 38 38 H 1.08998 * 109.47210 * 335.35459 * 7 6 5 39 39 H 1.08006 * 120.41823 * 359.96190 * 9 8 7 40 40 H 1.07999 * 120.79330 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.41342 * 180.02562 * 11 10 9 42 42 H 1.08001 * 119.61562 * 180.02562 * 12 11 10 43 43 H 1.09004 * 109.46832 * 51.53732 * 18 17 16 44 44 H 1.09001 * 109.47543 * 171.53752 * 18 17 16 45 45 H 1.08999 * 109.47223 * 291.53986 * 18 17 16 46 46 H 1.09006 * 109.46614 * 180.02562 * 21 19 17 47 47 H 1.08995 * 109.46895 * 300.00135 * 21 19 17 48 48 H 1.08999 * 109.47141 * 60.00493 * 21 19 17 49 49 H 0.97007 * 119.99676 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1308 2.5173 -0.1257 6 6 4.3557 3.4185 0.8778 7 6 4.0344 3.2281 2.3378 8 6 5.2593 2.7309 3.0612 9 6 5.7705 3.4588 4.1192 10 6 6.8973 2.9923 4.7782 11 6 7.4709 1.8060 4.3460 12 6 6.9039 1.1328 3.2809 13 7 5.8280 1.6038 2.6808 14 7 4.9019 4.4712 0.3381 15 7 5.0279 4.3014 -0.9296 16 6 4.5706 3.1191 -1.2687 17 7 4.5395 2.5833 -2.5462 18 6 3.1815 2.6312 -3.1044 19 6 5.4953 3.2673 -3.4275 20 1 5.2419 4.3259 -3.4862 21 6 6.9094 3.1119 -2.8645 22 6 5.4336 2.6584 -4.8046 23 1 4.7527 1.8443 -5.0050 24 6 6.2462 3.1405 -5.8086 25 7 7.0749 4.1321 -5.5646 26 14 6.1702 2.3852 -7.5154 27 1 5.1575 3.1036 -8.3300 28 1 7.5000 2.4984 -8.1664 29 1 5.7927 0.9531 -7.4066 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8465 -0.8899 34 1 1.6886 1.8463 0.8900 35 1 3.8640 0.7260 0.9321 36 1 3.8505 0.5657 -0.8406 37 1 3.7196 4.1792 2.7676 38 1 3.2306 2.4992 2.4409 39 1 5.2980 4.3794 4.4285 40 1 7.3185 3.5398 5.6085 41 1 8.3492 1.4129 4.8364 42 1 7.3444 0.2081 2.9385 43 1 2.7867 3.6431 -3.0131 44 1 3.2105 2.3460 -4.1560 45 1 2.5396 1.9401 -2.5581 46 1 7.6185 3.6199 -3.5183 47 1 6.9543 3.5521 -1.8684 48 1 7.1628 2.0534 -2.8058 49 1 7.6464 4.4716 -6.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812170229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:11 Heat of formation + Delta-G solvation = 92.531727 kcal Electronic energy + Delta-G solvation = -31160.465081 eV Core-core repulsion = 27125.235007 eV Total energy + Delta-G solvation = -4035.230074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50508 -40.25540 -38.19428 -37.07295 -34.98768 -33.74681 -32.71767 -32.47416 -29.93181 -29.78700 -29.19570 -27.31594 -26.48000 -25.30489 -24.27754 -23.69693 -23.53240 -22.58651 -21.68928 -20.14961 -19.39870 -17.35688 -16.94966 -16.41070 -16.35658 -16.24214 -16.13231 -15.81288 -15.46272 -15.15038 -14.95664 -14.83433 -14.28075 -13.86035 -13.69952 -13.57166 -13.22948 -13.10498 -13.03819 -12.52382 -12.43656 -12.33676 -11.95154 -11.82765 -11.66294 -11.51004 -11.06136 -10.97719 -10.90013 -10.66883 -10.31622 -10.18651 -10.04654 -10.02886 -9.90416 -9.84981 -9.70052 -9.55992 -9.18128 -9.12538 -8.58479 -8.42137 -7.42797 -6.01785 -4.09084 0.93026 1.14180 2.21460 2.55100 3.30161 3.37013 3.39334 3.40105 3.60486 3.72364 4.10163 4.36247 4.43823 4.64483 4.67760 4.70746 4.75367 4.80065 4.91245 4.94583 5.06597 5.10517 5.10571 5.16209 5.30119 5.31481 5.41115 5.42852 5.48615 5.56787 5.69042 5.78096 5.88928 5.98696 6.00804 6.10096 6.24773 6.46348 6.52333 6.56699 6.82538 6.95160 7.01462 7.18239 7.27446 7.49388 7.73983 7.77404 7.86367 8.01093 8.28059 8.49379 8.92923 9.36574 9.55303 11.04625 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009934 B = 0.003524 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.912178 B = 7942.622605 C = 9742.000940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.047 3.953 4 C 0.116 3.884 5 N -0.467 5.467 6 C 0.160 3.840 7 C 0.026 3.974 8 C 0.136 3.864 9 C -0.159 4.159 10 C -0.074 4.074 11 C -0.177 4.177 12 C 0.105 3.895 13 N -0.476 5.476 14 N -0.282 5.282 15 N -0.314 5.314 16 C 0.389 3.611 17 N -0.461 5.461 18 C 0.037 3.963 19 C 0.230 3.770 20 H 0.025 0.975 21 C -0.132 4.132 22 C -0.516 4.516 23 H 0.065 0.935 24 C 0.064 3.936 25 N -0.884 5.884 26 Si 0.899 3.101 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.025 0.975 44 H 0.101 0.899 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.020 0.980 48 H 0.026 0.974 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -6.337 20.589 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.031 4.031 4 C -0.008 4.008 5 N -0.164 5.164 6 C -0.108 4.108 7 C -0.014 4.014 8 C -0.003 4.003 9 C -0.179 4.179 10 C -0.100 4.100 11 C -0.197 4.197 12 C -0.052 4.052 13 N -0.185 5.185 14 N -0.122 5.122 15 N -0.158 5.158 16 C 0.033 3.967 17 N -0.187 5.187 18 C -0.111 4.111 19 C 0.126 3.874 20 H 0.043 0.957 21 C -0.191 4.191 22 C -0.555 4.555 23 H 0.083 0.917 24 C -0.139 4.139 25 N -0.522 5.522 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.044 0.956 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.039 0.961 48 H 0.045 0.955 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.376 -5.983 19.641 22.175 hybrid contribution -0.383 -0.341 -0.183 0.545 sum -8.759 -6.324 19.457 22.256 Atomic orbital electron populations 1.22768 0.80450 1.02953 1.00165 1.87831 1.20100 1.26797 1.95485 1.22886 0.93653 0.85405 1.01146 1.21474 0.91025 0.81773 1.06572 1.45935 1.48461 1.14997 1.06963 1.23887 1.05995 0.88837 0.92068 1.18769 0.94270 1.02958 0.85441 1.20933 0.95874 0.90804 0.92679 1.21943 0.97661 1.01094 0.97218 1.21568 0.94534 0.95276 0.98656 1.22143 1.01645 0.96793 0.99114 1.22737 0.91417 0.99152 0.91925 1.67417 1.09940 1.12907 1.28202 1.73942 1.15227 1.20939 1.02129 1.74819 1.23575 1.12574 1.04853 1.23046 0.96995 0.88115 0.88508 1.59099 1.08832 1.53809 0.96934 1.22433 0.86919 0.99135 1.02576 1.19332 0.86751 0.92860 0.88503 0.95749 1.21806 0.99660 0.99116 0.98487 1.21067 1.22790 1.18502 0.93102 0.91661 1.24897 0.95064 0.94962 0.98940 1.69929 1.23669 1.25565 1.32989 0.86483 0.77374 0.79563 0.83900 1.20689 1.21174 1.19811 0.94056 0.93781 0.89302 0.92303 0.92945 0.87605 0.87140 0.87028 0.88656 0.84484 0.84795 0.84872 0.82762 0.95588 0.88096 0.93349 0.89303 0.96086 0.95530 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.53 10.70 -35.23 -0.38 -4.90 16 3 C 0.05 0.56 6.14 37.16 0.23 0.79 16 4 C 0.12 1.63 5.93 -4.04 -0.02 1.61 16 5 N -0.47 -8.11 2.81 -114.08 -0.32 -8.43 16 6 C 0.16 2.68 7.16 -154.02 -1.10 1.58 16 7 C 0.03 0.30 5.99 -29.04 -0.17 0.13 16 8 C 0.14 1.67 6.13 -82.59 -0.51 1.16 16 9 C -0.16 -1.60 9.71 -39.44 -0.38 -1.98 16 10 C -0.07 -0.66 10.18 -39.28 -0.40 -1.06 16 11 C -0.18 -1.63 10.11 -39.44 -0.40 -2.02 16 12 C 0.11 1.18 11.18 -17.55 -0.20 0.98 16 13 N -0.48 -6.42 10.09 -9.48 -0.10 -6.51 16 14 N -0.28 -5.88 12.18 32.99 0.40 -5.48 16 15 N -0.31 -7.42 9.99 30.31 0.30 -7.12 16 16 C 0.39 8.37 6.03 -318.88 -1.92 6.44 16 17 N -0.46 -10.37 4.61 -176.08 -0.81 -11.18 16 18 C 0.04 0.71 9.43 60.06 0.57 1.28 16 19 C 0.23 6.06 1.73 -68.86 -0.12 5.94 16 20 H 0.02 0.73 7.92 -51.93 -0.41 0.32 16 21 C -0.13 -3.56 8.80 37.16 0.33 -3.24 16 22 C -0.52 -14.02 7.76 -34.44 -0.27 -14.29 16 23 H 0.07 1.71 6.48 -52.48 -0.34 1.37 16 24 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 25 N -0.88 -25.56 11.32 55.43 0.63 -24.93 16 26 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.75 6.25 -51.93 -0.32 0.43 16 34 H 0.05 0.54 7.70 -51.93 -0.40 0.14 16 35 H 0.11 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.11 1.72 8.08 -51.93 -0.42 1.30 16 37 H 0.11 1.03 7.86 -51.92 -0.41 0.63 16 38 H 0.10 0.91 7.41 -51.93 -0.38 0.53 16 39 H 0.14 1.03 7.94 -52.48 -0.42 0.62 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 44 H 0.10 2.02 5.89 -51.93 -0.31 1.71 16 45 H 0.05 0.79 5.88 -51.93 -0.31 0.48 16 46 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 47 H 0.02 0.55 6.22 -51.93 -0.32 0.23 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -34.51 400.06 -9.91 -44.41 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.29 Total: 1.64 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.35 Total: 0.37 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.10 Total: -63.66 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.51 -9.91 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812170229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.946 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds