Wall clock time and date at job start Wed Apr 1 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99805 * 2 1 4 4 C 1.53002 * 109.46564 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46762 * 174.80679 * 4 3 2 6 6 C 1.36737 * 127.14044 * 83.15115 * 5 4 3 7 7 C 1.50700 * 126.34545 * 359.96332 * 6 5 4 8 8 C 1.50699 * 109.47315 * 95.36007 * 7 6 5 9 9 C 1.38226 * 119.62065 * 121.76364 * 8 7 6 10 10 C 1.38624 * 119.16455 * 179.97438 * 9 8 7 11 11 C 1.38679 * 118.41719 * 0.02562 * 10 9 8 12 12 C 1.38175 * 119.16260 * 359.97438 * 11 10 9 13 13 N 1.31850 * 119.61848 * 301.49589 * 8 7 6 14 14 N 1.30296 * 107.30398 * 179.83638 * 6 5 4 15 15 N 1.28523 * 110.05635 * 0.43928 * 14 6 5 16 16 C 1.31222 * 109.85872 * 359.71841 * 15 14 6 17 17 N 1.38574 * 126.47080 * 179.97438 * 16 15 14 18 18 C 1.46898 * 111.00328 * 256.28771 * 17 16 15 19 19 C 1.46904 * 111.00354 * 20.24620 * 17 16 15 20 20 H 1.08999 * 109.46766 * 299.99763 * 19 17 16 21 21 C 1.53001 * 109.47010 * 59.99500 * 19 17 16 22 22 C 1.50700 * 109.47420 * 179.97438 * 19 17 16 23 23 H 1.08006 * 119.99766 * 359.97438 * 22 19 17 24 24 C 1.37873 * 120.00203 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99555 * 359.97438 * 24 22 19 26 26 Si 1.86794 * 119.99999 * 179.97438 * 24 22 19 27 27 H 1.48495 * 109.47294 * 90.00010 * 26 24 22 28 28 H 1.48503 * 109.46988 * 210.00004 * 26 24 22 29 29 H 1.48495 * 109.47268 * 329.99441 * 26 24 22 30 30 H 1.09001 * 109.46796 * 299.99633 * 1 2 3 31 31 H 1.08998 * 109.47122 * 59.99181 * 1 2 3 32 32 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47454 * 300.00348 * 3 2 1 34 34 H 1.08998 * 109.46690 * 60.00609 * 3 2 1 35 35 H 1.09006 * 109.47137 * 294.80037 * 4 3 2 36 36 H 1.08993 * 109.47379 * 54.80717 * 4 3 2 37 37 H 1.09011 * 109.46924 * 215.36027 * 7 6 5 38 38 H 1.08998 * 109.47210 * 335.35459 * 7 6 5 39 39 H 1.08006 * 120.41823 * 359.96190 * 9 8 7 40 40 H 1.07999 * 120.79330 * 180.02562 * 10 9 8 41 41 H 1.08001 * 120.41342 * 180.02562 * 11 10 9 42 42 H 1.08001 * 119.61562 * 180.02562 * 12 11 10 43 43 H 1.09004 * 109.46832 * 51.53732 * 18 17 16 44 44 H 1.09001 * 109.47543 * 171.53752 * 18 17 16 45 45 H 1.08999 * 109.47223 * 291.53986 * 18 17 16 46 46 H 1.09006 * 109.46614 * 180.02562 * 21 19 17 47 47 H 1.08995 * 109.46895 * 300.00135 * 21 19 17 48 48 H 1.08999 * 109.47141 * 60.00493 * 21 19 17 49 49 H 0.97007 * 119.99676 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1308 2.5173 -0.1257 6 6 4.3557 3.4185 0.8778 7 6 4.0344 3.2281 2.3378 8 6 5.2593 2.7309 3.0612 9 6 5.7705 3.4588 4.1192 10 6 6.8973 2.9923 4.7782 11 6 7.4709 1.8060 4.3460 12 6 6.9039 1.1328 3.2809 13 7 5.8280 1.6038 2.6808 14 7 4.9019 4.4712 0.3381 15 7 5.0279 4.3014 -0.9296 16 6 4.5706 3.1191 -1.2687 17 7 4.5395 2.5833 -2.5462 18 6 3.1815 2.6312 -3.1044 19 6 5.4953 3.2673 -3.4275 20 1 5.2419 4.3259 -3.4862 21 6 6.9094 3.1119 -2.8645 22 6 5.4336 2.6584 -4.8046 23 1 4.7527 1.8443 -5.0050 24 6 6.2462 3.1405 -5.8086 25 7 7.0749 4.1321 -5.5646 26 14 6.1702 2.3852 -7.5154 27 1 5.1575 3.1036 -8.3300 28 1 7.5000 2.4984 -8.1664 29 1 5.7927 0.9531 -7.4066 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8465 -0.8899 34 1 1.6886 1.8463 0.8900 35 1 3.8640 0.7260 0.9321 36 1 3.8505 0.5657 -0.8406 37 1 3.7196 4.1792 2.7676 38 1 3.2306 2.4992 2.4409 39 1 5.2980 4.3794 4.4285 40 1 7.3185 3.5398 5.6085 41 1 8.3492 1.4129 4.8364 42 1 7.3444 0.2081 2.9385 43 1 2.7867 3.6431 -3.0131 44 1 3.2105 2.3460 -4.1560 45 1 2.5396 1.9401 -2.5581 46 1 7.6185 3.6199 -3.5183 47 1 6.9543 3.5521 -1.8684 48 1 7.1628 2.0534 -2.8058 49 1 7.6464 4.4716 -6.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812170229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:10 Heat of formation + Delta-G solvation = 71.245903 kcal Electronic energy + Delta-G solvation = -31161.388103 eV Core-core repulsion = 27125.235007 eV Total energy + Delta-G solvation = -4036.153096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.00410 -41.04617 -39.09783 -38.86812 -36.29127 -35.10352 -34.35440 -33.25766 -31.37716 -31.06225 -30.87521 -28.58120 -27.28170 -27.20259 -26.06020 -24.64172 -24.47880 -23.75296 -23.21996 -21.44333 -21.12817 -18.67268 -18.17455 -17.78163 -17.48841 -17.36330 -17.16846 -16.99096 -16.68981 -16.41880 -16.31933 -15.92761 -15.79445 -15.31602 -14.96488 -14.63093 -14.45200 -14.25085 -14.01275 -13.97324 -13.76147 -13.39478 -13.33873 -13.01478 -12.82135 -12.75268 -12.65428 -12.59305 -12.50854 -12.29368 -12.21681 -12.09699 -12.06696 -11.50391 -11.12082 -11.08602 -10.78068 -10.73522 -10.59554 -10.46038 -10.25180 -9.92500 -9.17831 -8.13391 -6.28702 0.14087 0.40132 0.80504 1.21372 1.44913 1.46171 1.57142 1.85375 2.40141 2.65882 2.82204 3.10005 3.18872 3.25930 3.49062 3.60895 3.80522 3.82474 3.98710 4.01212 4.10062 4.13852 4.27019 4.29869 4.34738 4.44307 4.48483 4.50846 4.54565 4.58877 4.68683 4.72358 4.76614 4.79229 4.85868 4.86354 4.94442 4.99216 5.03815 5.15729 5.25472 5.30070 5.40760 5.54014 5.63286 5.80617 5.88898 5.97659 6.05481 6.14646 6.58676 6.81071 7.05755 7.39973 7.82302 8.93752 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009934 B = 0.003524 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.912178 B = 7942.622605 C = 9742.000940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.057 3.943 4 C 0.116 3.884 5 N -0.460 5.460 6 C 0.191 3.809 7 C 0.026 3.974 8 C 0.109 3.891 9 C -0.161 4.161 10 C -0.077 4.077 11 C -0.172 4.172 12 C 0.080 3.920 13 N -0.510 5.510 14 N -0.323 5.323 15 N -0.361 5.361 16 C 0.369 3.631 17 N -0.462 5.462 18 C 0.041 3.959 19 C 0.243 3.757 20 H -0.020 1.020 21 C -0.114 4.114 22 C -0.528 4.528 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.919 5.919 26 Si 0.971 3.029 27 H -0.273 1.273 28 H -0.286 1.286 29 H -0.263 1.263 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.017 0.983 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.013 0.987 48 H 0.023 0.977 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -7.758 22.536 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.020 4.020 4 C -0.007 4.007 5 N -0.155 5.155 6 C -0.078 4.078 7 C -0.014 4.014 8 C -0.029 4.029 9 C -0.180 4.180 10 C -0.103 4.103 11 C -0.192 4.192 12 C -0.077 4.077 13 N -0.220 5.220 14 N -0.162 5.162 15 N -0.205 5.205 16 C 0.012 3.988 17 N -0.187 5.187 18 C -0.105 4.105 19 C 0.137 3.863 20 H -0.002 1.002 21 C -0.172 4.172 22 C -0.566 4.566 23 H 0.092 0.908 24 C -0.186 4.186 25 N -0.558 5.558 26 Si 0.795 3.205 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.187 1.187 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.179 0.821 40 H 0.184 0.816 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.036 0.964 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.032 0.968 48 H 0.043 0.957 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.793 -7.424 21.616 24.865 hybrid contribution 0.036 0.072 -0.589 0.594 sum -9.757 -7.352 21.027 24.319 Atomic orbital electron populations 1.23004 0.78549 1.04352 1.01108 1.87807 1.22113 1.26407 1.95635 1.22701 0.91720 0.85866 1.01745 1.21622 0.92786 0.79828 1.06464 1.46040 1.47861 1.15872 1.05718 1.24873 1.02175 0.87010 0.93751 1.19124 0.95216 1.05258 0.81760 1.21042 0.96488 0.91336 0.94055 1.22274 0.97829 1.01508 0.96431 1.22019 0.93970 0.95168 0.99133 1.22481 1.02006 0.96592 0.98097 1.23062 0.91557 1.00113 0.92977 1.67339 1.11196 1.13945 1.29488 1.73845 1.17896 1.23121 1.01291 1.74686 1.24883 1.14260 1.06626 1.22875 0.98530 0.88492 0.88915 1.59016 1.09499 1.53102 0.97122 1.22458 0.86027 0.99526 1.02534 1.18923 0.87200 0.90718 0.89455 1.00193 1.21574 0.99923 0.98254 0.97455 1.21353 1.22982 1.18661 0.93576 0.90791 1.25802 0.94508 0.95238 1.03090 1.70084 1.24455 1.26950 1.34279 0.85365 0.77353 0.79092 0.78673 1.19840 1.21140 1.18684 0.92398 0.93539 0.87776 0.93274 0.90722 0.86351 0.88737 0.84297 0.86213 0.82073 0.81634 0.82154 0.81885 0.96409 0.88829 0.90007 0.91638 0.96784 0.95740 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.56 10.70 -148.98 -1.59 -10.16 16 3 C 0.06 1.25 6.14 71.98 0.44 1.69 16 4 C 0.12 3.16 5.93 86.38 0.51 3.67 16 5 N -0.46 -15.88 2.81 -514.85 -1.45 -17.33 16 6 C 0.19 6.30 7.16 137.64 0.99 7.28 16 7 C 0.03 0.55 5.99 29.10 0.17 0.73 16 8 C 0.11 2.49 6.13 42.55 0.26 2.75 16 9 C -0.16 -2.81 9.71 22.36 0.22 -2.59 16 10 C -0.08 -1.14 10.18 22.47 0.23 -0.91 16 11 C -0.17 -2.77 10.11 22.36 0.23 -2.54 16 12 C 0.08 1.71 11.18 84.67 0.95 2.66 16 13 N -0.51 -13.29 10.09 -183.90 -1.85 -15.14 16 14 N -0.32 -13.71 12.18 -49.54 -0.60 -14.31 16 15 N -0.36 -17.79 9.99 -58.00 -0.58 -18.37 16 16 C 0.37 16.35 6.03 260.11 1.57 17.92 16 17 N -0.46 -21.41 4.61 -710.99 -3.28 -24.68 16 18 C 0.04 1.62 9.43 127.69 1.20 2.83 16 19 C 0.24 13.39 1.73 44.17 0.08 13.46 16 20 H -0.02 -1.24 7.92 -2.39 -0.02 -1.26 16 21 C -0.11 -6.43 8.80 71.98 0.63 -5.80 16 22 C -0.53 -29.28 7.76 25.60 0.20 -29.08 16 23 H 0.07 3.90 6.48 -2.91 -0.02 3.88 16 24 C 0.01 0.73 5.30 84.65 0.45 1.18 16 25 N -0.92 -54.89 11.32 21.45 0.24 -54.64 16 26 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 29 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.17 6.25 -2.39 -0.01 1.16 16 34 H 0.07 1.30 7.70 -2.39 -0.02 1.29 16 35 H 0.12 2.95 8.10 -2.38 -0.02 2.93 16 36 H 0.09 2.91 8.08 -2.39 -0.02 2.89 16 37 H 0.14 2.16 7.86 -2.38 -0.02 2.14 16 38 H 0.12 1.91 7.41 -2.39 -0.02 1.89 16 39 H 0.16 1.89 7.94 -2.91 -0.02 1.87 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.02 0.70 8.07 -2.39 -0.02 0.68 16 44 H 0.09 3.78 5.89 -2.39 -0.01 3.77 16 45 H 0.08 2.61 5.88 -2.39 -0.01 2.60 16 46 H 0.06 3.98 6.07 -2.38 -0.01 3.97 16 47 H 0.01 0.76 6.22 -2.39 -0.01 0.75 16 48 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -79.06 400.06 3.24 -75.82 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.96 Total: 18.33 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 9.37 Total: 14.85 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -7.52 Total: -144.48 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.59 Total: -10.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -79.06 3.24 -75.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812170229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.068 kcal (2) G-P(sol) polarization free energy of solvation -79.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds