Wall clock time and date at job start Wed Apr 1 2020 03:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 N 1.46491 * 109.47051 * 126.33224 * 3 2 1 5 5 C 1.36748 * 127.14094 * 274.11452 * 4 3 2 6 6 C 1.50695 * 126.34395 * 0.02562 * 5 4 3 7 7 H 1.08997 * 110.86062 * 359.30313 * 6 5 4 8 8 C 1.54487 * 110.96622 * 123.09374 * 6 5 4 9 9 N 1.46760 * 105.47096 * 143.53664 * 8 6 5 10 10 C 1.34417 * 111.30544 * 342.97956 * 9 8 6 11 11 O 1.21278 * 124.94669 * 180.41950 * 10 9 8 12 12 C 1.51342 * 110.12873 * 0.43932 * 10 9 8 13 13 N 1.30294 * 107.30797 * 179.97438 * 5 4 3 14 14 N 1.28531 * 110.05362 * 359.72230 * 13 5 4 15 15 C 1.31218 * 109.85956 * 0.45506 * 14 13 5 16 16 N 1.38579 * 126.47717 * 179.81609 * 15 14 13 17 17 C 1.46901 * 110.99994 * 107.74150 * 16 15 14 18 18 C 1.50705 * 109.47058 * 304.63316 * 17 16 15 19 19 H 1.07997 * 120.00184 * 354.58997 * 18 17 16 20 20 C 1.37879 * 119.99411 * 174.86189 * 18 17 16 21 21 N 1.31512 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99529 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47194 * 90.00199 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99986 * 22 20 18 25 25 H 1.48504 * 109.47124 * 330.00089 * 22 20 18 26 26 C 1.46898 * 110.99690 * 343.79345 * 16 15 14 27 27 C 1.53003 * 109.47288 * 199.28560 * 26 16 15 28 28 C 1.53006 * 117.49902 * 245.80244 * 27 26 16 29 29 C 1.52993 * 117.50100 * 177.18126 * 27 26 16 30 30 H 1.08000 * 119.99795 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00593 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00075 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47102 * 6.33379 * 3 2 1 34 34 H 1.08996 * 109.47242 * 246.33595 * 3 2 1 35 35 H 1.09006 * 110.24417 * 262.53326 * 8 6 5 36 36 H 1.08996 * 110.24567 * 24.44732 * 8 6 5 37 37 H 0.97008 * 124.34967 * 162.96227 * 9 8 6 38 38 H 1.08993 * 110.48372 * 257.54575 * 12 10 9 39 39 H 1.09001 * 110.52413 * 134.87626 * 12 10 9 40 40 H 1.08994 * 109.47070 * 184.63151 * 17 16 15 41 41 H 1.09005 * 109.46775 * 64.62997 * 17 16 15 42 42 H 0.97007 * 119.99467 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47221 * 319.28425 * 26 16 15 44 44 H 1.08999 * 109.47345 * 79.28510 * 26 16 15 45 45 H 1.08996 * 115.54916 * 31.50015 * 27 26 16 46 46 H 1.08999 * 117.49337 * 359.97438 * 28 27 26 47 47 H 1.08996 * 117.49863 * 145.01544 * 28 27 26 48 48 H 1.09000 * 117.49809 * 214.98073 * 29 27 26 49 49 H 1.09002 * 117.50402 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0163 1.3189 1.1126 5 6 2.7712 1.6930 2.4049 6 6 1.4560 2.1740 2.9613 7 1 0.6928 2.2028 2.1836 8 6 1.0030 1.2946 4.1480 9 7 0.3627 2.2148 5.0951 10 6 0.6922 3.4916 4.8342 11 8 0.3076 4.4517 5.4676 12 6 1.6125 3.5572 3.6345 13 7 3.8854 1.5554 3.0662 14 7 4.8092 1.1176 2.2871 15 6 4.3324 0.9603 1.0748 16 7 5.0317 0.5097 -0.0335 17 6 4.6203 -0.8528 -0.3974 18 6 4.7843 -1.7619 0.7933 19 1 5.2380 -1.3885 1.6994 20 6 4.3602 -3.0720 0.7238 21 7 3.8130 -3.5283 -0.3816 22 14 4.5641 -4.1991 2.1995 23 1 3.3556 -4.1139 3.0582 24 1 4.7423 -5.5977 1.7332 25 1 5.7565 -3.7818 2.9801 26 6 6.4812 0.5785 0.1949 27 6 7.2115 0.5464 -1.1492 28 6 8.0868 -0.6723 -1.4487 29 6 8.7358 0.6756 -1.1282 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3605 2.1305 0.1134 34 1 2.6024 1.4135 -0.9412 35 1 0.2886 0.5438 3.8100 36 1 1.8644 0.8135 4.6112 37 1 -0.2233 1.9374 5.8167 38 1 2.6434 3.7121 3.9527 39 1 1.2989 4.3497 2.9551 40 1 5.2410 -1.2129 -1.2177 41 1 3.5755 -0.8460 -0.7081 42 1 3.5143 -4.4500 -0.4302 43 1 6.7231 1.5038 0.7178 44 1 6.7946 -0.2729 0.7991 45 1 6.6792 1.0015 -1.9843 46 1 8.1426 -1.4509 -0.6880 47 1 8.1303 -1.0191 -2.4811 48 1 9.2064 1.2156 -1.9498 49 1 9.2185 0.7839 -0.1569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818150295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:31 Heat of formation + Delta-G solvation = 103.641020 kcal Electronic energy + Delta-G solvation = -31628.184878 eV Core-core repulsion = 27593.436540 eV Total energy + Delta-G solvation = -4034.748338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50792 -40.20956 -37.94537 -36.59145 -36.02398 -35.43840 -32.73010 -32.53199 -31.96406 -28.86002 -27.72062 -27.30918 -26.56362 -25.37404 -23.31867 -22.68358 -21.93049 -20.83638 -20.65597 -20.38068 -19.44845 -19.31075 -17.49892 -17.17109 -16.75022 -16.07792 -15.82820 -15.60518 -15.14307 -15.07880 -14.54347 -14.47983 -14.07961 -13.88591 -13.75329 -13.57573 -13.35510 -13.13224 -12.99356 -12.71813 -12.26522 -11.96169 -11.77146 -11.55609 -11.47870 -11.27615 -11.13654 -11.10066 -11.05000 -10.83607 -10.62858 -10.31486 -10.12605 -10.02605 -9.90035 -9.75681 -9.62282 -9.41859 -9.38338 -9.22048 -8.84529 -8.60849 -7.53831 -6.23243 -4.29660 2.05379 2.30580 2.52991 2.91866 3.18375 3.24928 3.26166 3.33153 3.44029 4.08585 4.17160 4.29423 4.43835 4.48520 4.53826 4.73725 4.86768 4.88632 4.91764 5.11385 5.24243 5.35061 5.36092 5.40807 5.44605 5.47205 5.52870 5.70447 5.72218 5.75829 5.91930 5.97064 6.01022 6.09236 6.25260 6.30591 6.36613 6.52850 6.55517 6.64286 6.73961 6.77014 6.79275 6.86641 6.94686 7.16716 7.24154 7.53726 7.73341 7.94677 8.07153 8.13700 8.79494 9.34546 9.38613 10.82977 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.004030 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.629804 B = 6945.706105 C = 7965.882687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.165 4.165 3 C 0.142 3.858 4 N -0.467 5.467 5 C 0.153 3.847 6 C -0.001 4.001 7 H 0.102 0.898 8 C 0.112 3.888 9 N -0.729 5.729 10 C 0.525 3.475 11 O -0.540 6.540 12 C -0.145 4.145 13 N -0.276 5.276 14 N -0.333 5.333 15 C 0.423 3.577 16 N -0.468 5.468 17 C 0.188 3.812 18 C -0.550 4.550 19 H 0.068 0.932 20 C 0.072 3.928 21 N -0.889 5.889 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.271 1.271 26 C 0.106 3.894 27 C -0.136 4.136 28 C -0.173 4.173 29 C -0.185 4.185 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.411 0.589 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 8.377 -1.297 9.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.183 4.183 3 C 0.019 3.981 4 N -0.161 5.161 5 C -0.115 4.115 6 C -0.022 4.022 7 H 0.121 0.879 8 C -0.014 4.014 9 N -0.384 5.384 10 C 0.312 3.688 11 O -0.417 6.417 12 C -0.186 4.186 13 N -0.116 5.116 14 N -0.177 5.177 15 C 0.067 3.933 16 N -0.192 5.192 17 C 0.064 3.936 18 C -0.589 4.589 19 H 0.086 0.914 20 C -0.131 4.131 21 N -0.528 5.528 22 Si 0.715 3.285 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.196 1.196 26 C -0.021 4.021 27 C -0.155 4.155 28 C -0.210 4.210 29 C -0.222 4.222 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.207 9.056 -0.450 9.996 hybrid contribution -0.946 -1.781 0.303 2.039 sum -5.152 7.275 -0.147 8.916 Atomic orbital electron populations 1.23802 0.95488 1.01782 1.01026 1.23553 0.96318 0.99383 0.99092 1.20876 0.91114 0.96693 0.89423 1.45919 1.09731 1.50776 1.09667 1.23589 0.97763 1.08154 0.81950 1.20147 0.90705 0.94439 0.96938 0.87947 1.22133 0.98787 0.91822 0.88617 1.46204 1.50427 1.07611 1.34178 1.20809 0.80056 0.82642 0.85321 1.90746 1.57186 1.38942 1.54829 1.22452 1.02501 0.97288 0.96342 1.73774 0.96433 1.15601 1.25812 1.74668 1.23454 1.22072 0.97513 1.22493 0.82006 0.97029 0.91776 1.59254 1.05653 1.27801 1.26478 1.20119 0.97601 0.78940 0.96922 1.21756 1.41133 0.96235 0.99740 0.91426 1.24841 0.94651 0.97853 0.95755 1.69924 1.40502 1.16324 1.26014 0.86656 0.78908 0.79951 0.83034 1.20738 1.21108 1.19616 1.21454 0.84043 1.02244 0.94373 1.22163 0.91448 1.02517 0.99360 1.22995 1.04048 0.91575 1.02335 1.22923 0.95381 1.01372 1.02553 0.87944 0.88909 0.84338 0.89333 0.87373 0.89627 0.89297 0.75042 0.86330 0.87735 0.93340 0.93951 0.92704 0.91152 0.91429 0.87744 0.88403 0.89380 0.89355 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.01 0.42 -1.66 16 2 C -0.16 -2.36 9.20 -36.03 -0.33 -2.69 16 3 C 0.14 1.87 5.76 -5.20 -0.03 1.84 16 4 N -0.47 -7.71 2.79 -115.37 -0.32 -8.03 16 5 C 0.15 2.42 6.60 -154.01 -1.02 1.40 16 6 C 0.00 -0.01 3.54 -90.14 -0.32 -0.33 16 7 H 0.10 0.95 7.16 -51.93 -0.37 0.58 16 8 C 0.11 1.22 7.34 -3.12 -0.02 1.19 16 9 N -0.73 -7.63 6.24 -59.18 -0.37 -8.00 16 10 C 0.53 6.75 8.43 -10.83 -0.09 6.65 16 11 O -0.54 -8.90 18.03 5.56 0.10 -8.80 16 12 C -0.14 -1.64 6.41 -26.71 -0.17 -1.81 16 13 N -0.28 -5.29 11.78 32.99 0.39 -4.90 16 14 N -0.33 -7.05 10.88 30.32 0.33 -6.72 16 15 C 0.42 8.32 5.64 -318.87 -1.80 6.52 16 16 N -0.47 -9.10 4.67 -175.88 -0.82 -9.92 16 17 C 0.19 4.17 4.99 -4.97 -0.02 4.15 16 18 C -0.55 -13.81 7.55 -34.44 -0.26 -14.07 16 19 H 0.07 1.82 6.47 -52.49 -0.34 1.48 16 20 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 21 N -0.89 -23.51 13.29 55.43 0.74 -22.77 16 22 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.11 1.96 4.66 -3.82 -0.02 1.94 16 27 C -0.14 -2.14 5.19 -90.62 -0.47 -2.61 16 28 C -0.17 -2.63 10.18 -26.73 -0.27 -2.90 16 29 C -0.18 -2.47 10.25 -26.74 -0.27 -2.74 16 30 H 0.10 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.09 0.81 7.85 -52.49 -0.41 0.40 16 32 H 0.14 2.65 6.50 -52.49 -0.34 2.30 16 33 H 0.09 0.86 7.11 -51.93 -0.37 0.50 16 34 H 0.11 1.45 8.13 -51.93 -0.42 1.03 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.15 7.73 -51.93 -0.40 0.75 16 37 H 0.41 3.54 8.96 -40.82 -0.37 3.17 16 38 H 0.12 1.50 7.72 -51.93 -0.40 1.10 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.15 7.45 -51.93 -0.39 0.77 16 41 H 0.04 0.97 5.21 -51.93 -0.27 0.70 16 42 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 43 H 0.07 1.28 7.65 -51.93 -0.40 0.89 16 44 H 0.07 1.42 6.43 -51.93 -0.33 1.09 16 45 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 46 H 0.10 1.64 8.04 -51.93 -0.42 1.22 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -30.74 401.68 -11.03 -41.77 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.32 Total: 8.86 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -4.78 Total: -3.35 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.06 Total: -60.34 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.10 Total: -8.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.74 -11.03 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818150295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.415 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds