Wall clock time and date at job start Wed Apr 1 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 N 1.46491 * 109.47051 * 126.33224 * 3 2 1 5 5 C 1.36748 * 127.14094 * 274.11452 * 4 3 2 6 6 C 1.50695 * 126.34395 * 0.02562 * 5 4 3 7 7 H 1.08997 * 110.86062 * 359.30313 * 6 5 4 8 8 C 1.54487 * 110.96622 * 123.09374 * 6 5 4 9 9 N 1.46760 * 105.47096 * 143.53664 * 8 6 5 10 10 C 1.34417 * 111.30544 * 342.97956 * 9 8 6 11 11 O 1.21278 * 124.94669 * 180.41950 * 10 9 8 12 12 C 1.51342 * 110.12873 * 0.43932 * 10 9 8 13 13 N 1.30294 * 107.30797 * 179.97438 * 5 4 3 14 14 N 1.28531 * 110.05362 * 359.72230 * 13 5 4 15 15 C 1.31218 * 109.85956 * 0.45506 * 14 13 5 16 16 N 1.38579 * 126.47717 * 179.81609 * 15 14 13 17 17 C 1.46901 * 110.99994 * 107.74150 * 16 15 14 18 18 C 1.50705 * 109.47058 * 304.63316 * 17 16 15 19 19 H 1.07997 * 120.00184 * 354.58997 * 18 17 16 20 20 C 1.37879 * 119.99411 * 174.86189 * 18 17 16 21 21 N 1.31512 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99529 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47194 * 90.00199 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99986 * 22 20 18 25 25 H 1.48504 * 109.47124 * 330.00089 * 22 20 18 26 26 C 1.46898 * 110.99690 * 343.79345 * 16 15 14 27 27 C 1.53003 * 109.47288 * 199.28560 * 26 16 15 28 28 C 1.53006 * 117.49902 * 245.80244 * 27 26 16 29 29 C 1.52993 * 117.50100 * 177.18126 * 27 26 16 30 30 H 1.08000 * 119.99795 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00593 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00075 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.47102 * 6.33379 * 3 2 1 34 34 H 1.08996 * 109.47242 * 246.33595 * 3 2 1 35 35 H 1.09006 * 110.24417 * 262.53326 * 8 6 5 36 36 H 1.08996 * 110.24567 * 24.44732 * 8 6 5 37 37 H 0.97008 * 124.34967 * 162.96227 * 9 8 6 38 38 H 1.08993 * 110.48372 * 257.54575 * 12 10 9 39 39 H 1.09001 * 110.52413 * 134.87626 * 12 10 9 40 40 H 1.08994 * 109.47070 * 184.63151 * 17 16 15 41 41 H 1.09005 * 109.46775 * 64.62997 * 17 16 15 42 42 H 0.97007 * 119.99467 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47221 * 319.28425 * 26 16 15 44 44 H 1.08999 * 109.47345 * 79.28510 * 26 16 15 45 45 H 1.08996 * 115.54916 * 31.50015 * 27 26 16 46 46 H 1.08999 * 117.49337 * 359.97438 * 28 27 26 47 47 H 1.08996 * 117.49863 * 145.01544 * 28 27 26 48 48 H 1.09000 * 117.49809 * 214.98073 * 29 27 26 49 49 H 1.09002 * 117.50402 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0163 1.3189 1.1126 5 6 2.7712 1.6930 2.4049 6 6 1.4560 2.1740 2.9613 7 1 0.6928 2.2028 2.1836 8 6 1.0030 1.2946 4.1480 9 7 0.3627 2.2148 5.0951 10 6 0.6922 3.4916 4.8342 11 8 0.3076 4.4517 5.4676 12 6 1.6125 3.5572 3.6345 13 7 3.8854 1.5554 3.0662 14 7 4.8092 1.1176 2.2871 15 6 4.3324 0.9603 1.0748 16 7 5.0317 0.5097 -0.0335 17 6 4.6203 -0.8528 -0.3974 18 6 4.7843 -1.7619 0.7933 19 1 5.2380 -1.3885 1.6994 20 6 4.3602 -3.0720 0.7238 21 7 3.8130 -3.5283 -0.3816 22 14 4.5641 -4.1991 2.1995 23 1 3.3556 -4.1139 3.0582 24 1 4.7423 -5.5977 1.7332 25 1 5.7565 -3.7818 2.9801 26 6 6.4812 0.5785 0.1949 27 6 7.2115 0.5464 -1.1492 28 6 8.0868 -0.6723 -1.4487 29 6 8.7358 0.6756 -1.1282 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3605 2.1305 0.1134 34 1 2.6024 1.4135 -0.9412 35 1 0.2886 0.5438 3.8100 36 1 1.8644 0.8135 4.6112 37 1 -0.2233 1.9374 5.8167 38 1 2.6434 3.7121 3.9527 39 1 1.2989 4.3497 2.9551 40 1 5.2410 -1.2129 -1.2177 41 1 3.5755 -0.8460 -0.7081 42 1 3.5143 -4.4500 -0.4302 43 1 6.7231 1.5038 0.7178 44 1 6.7946 -0.2729 0.7991 45 1 6.6792 1.0015 -1.9843 46 1 8.1426 -1.4509 -0.6880 47 1 8.1303 -1.0191 -2.4811 48 1 9.2064 1.2156 -1.9498 49 1 9.2185 0.7839 -0.1569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818150295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:30 Heat of formation + Delta-G solvation = 85.031376 kcal Electronic energy + Delta-G solvation = -31628.991853 eV Core-core repulsion = 27593.436540 eV Total energy + Delta-G solvation = -4035.555313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.88144 -41.21974 -39.37846 -37.67739 -37.27257 -36.73193 -34.64505 -33.66976 -33.08649 -30.19091 -29.34022 -28.44706 -27.67441 -27.00024 -24.62236 -24.21762 -23.12154 -22.12500 -21.61422 -21.59492 -20.68420 -20.57497 -18.76395 -18.45738 -18.19526 -17.48785 -17.22540 -16.88621 -16.63428 -16.11487 -16.07185 -15.71411 -15.36996 -15.12171 -14.81097 -14.70378 -14.60807 -14.35835 -14.19342 -14.08216 -13.62690 -13.31540 -13.14158 -13.12592 -12.72923 -12.66191 -12.57223 -12.36430 -12.30467 -12.27439 -12.23072 -12.03801 -11.88199 -11.27263 -11.16055 -11.12423 -10.93106 -10.71384 -10.62489 -10.43910 -10.35417 -10.16412 -9.12088 -8.23327 -6.34086 0.82998 1.14155 1.26474 1.31093 1.40468 1.50959 1.73243 1.95713 2.32612 2.38190 2.88256 3.04464 3.07416 3.19070 3.48151 3.54149 3.72355 3.88821 3.90872 3.95085 4.00140 4.07215 4.19984 4.29766 4.38162 4.45052 4.56582 4.60663 4.61881 4.64752 4.80981 4.81889 4.84577 4.94170 5.01469 5.09539 5.12066 5.14944 5.23553 5.31079 5.34587 5.41246 5.62429 5.70481 5.74171 5.77884 5.83071 5.94425 5.98525 6.07268 6.51220 6.79524 7.19397 7.34533 7.92824 8.80969 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009992 B = 0.004030 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.629804 B = 6945.706105 C = 7965.882687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.198 4.198 3 C 0.140 3.860 4 N -0.464 5.464 5 C 0.178 3.822 6 C 0.003 3.997 7 H 0.141 0.859 8 C 0.115 3.885 9 N -0.713 5.713 10 C 0.525 3.475 11 O -0.579 6.579 12 C -0.137 4.137 13 N -0.314 5.314 14 N -0.367 5.367 15 C 0.399 3.601 16 N -0.458 5.458 17 C 0.208 3.792 18 C -0.547 4.547 19 H 0.044 0.956 20 C 0.037 3.963 21 N -0.908 5.908 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.276 1.276 25 H -0.282 1.282 26 C 0.115 3.885 27 C -0.149 4.149 28 C -0.183 4.183 29 C -0.155 4.155 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.421 0.579 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.030 0.970 41 H 0.039 0.961 42 H 0.265 0.735 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.118 0.882 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 9.658 -2.086 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.217 4.217 3 C 0.019 3.981 4 N -0.157 5.157 5 C -0.091 4.091 6 C -0.019 4.019 7 H 0.159 0.841 8 C -0.010 4.010 9 N -0.368 5.368 10 C 0.312 3.688 11 O -0.459 6.459 12 C -0.178 4.178 13 N -0.153 5.153 14 N -0.212 5.212 15 C 0.042 3.958 16 N -0.181 5.181 17 C 0.083 3.917 18 C -0.586 4.586 19 H 0.062 0.938 20 C -0.164 4.164 21 N -0.547 5.547 22 Si 0.758 3.242 23 H -0.205 1.205 24 H -0.201 1.201 25 H -0.208 1.208 26 C -0.013 4.013 27 C -0.168 4.168 28 C -0.220 4.220 29 C -0.192 4.192 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.148 0.852 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.130 0.870 46 H 0.092 0.908 47 H 0.119 0.881 48 H 0.136 0.864 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.316 10.310 -1.235 12.154 hybrid contribution -0.373 -2.191 0.611 2.305 sum -6.689 8.119 -0.624 10.538 Atomic orbital electron populations 1.24075 0.94139 1.03734 0.96129 1.23129 0.97241 0.97600 1.03714 1.21169 0.91059 0.97773 0.88061 1.46186 1.09087 1.49707 1.10736 1.24366 0.98342 1.05071 0.81335 1.20416 0.89139 0.94296 0.98012 0.84122 1.22091 0.98680 0.92044 0.88230 1.46125 1.49745 1.06834 1.34136 1.20986 0.79790 0.82664 0.85339 1.90734 1.58765 1.40241 1.56207 1.22401 1.01286 0.97909 0.96201 1.73700 0.97538 1.17666 1.26415 1.74554 1.25189 1.22927 0.98488 1.22553 0.83573 0.98256 0.91459 1.59258 1.06079 1.25901 1.26826 1.19732 0.96835 0.80054 0.95101 1.21795 1.40238 0.96788 0.99780 0.93754 1.25322 0.94813 0.98852 0.97422 1.69978 1.41269 1.16570 1.26927 0.85983 0.78246 0.79096 0.80921 1.20491 1.20137 1.20781 1.21344 0.83876 1.00483 0.95576 1.22111 0.92986 1.03681 0.98010 1.22967 1.05012 0.91697 1.02337 1.23017 0.93247 0.99280 1.03668 0.88075 0.84613 0.89974 0.84489 0.88048 0.87053 0.91671 0.73856 0.87937 0.85193 0.95152 0.94340 0.92586 0.91297 0.94928 0.86997 0.90828 0.88090 0.86401 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.20 -5.34 9.20 25.64 0.24 -5.11 16 3 C 0.14 3.38 5.76 85.63 0.49 3.88 16 4 N -0.46 -14.93 2.79 -518.92 -1.45 -16.38 16 5 C 0.18 5.39 6.60 137.63 0.91 6.30 16 6 C 0.00 0.05 3.54 -10.48 -0.04 0.01 16 7 H 0.14 1.76 7.16 -2.39 -0.02 1.75 16 8 C 0.12 2.20 7.34 86.84 0.64 2.84 16 9 N -0.71 -13.18 6.24 -459.73 -2.87 -16.05 16 10 C 0.52 12.37 8.43 87.92 0.74 13.11 16 11 O -0.58 -18.31 18.03 -3.02 -0.05 -18.36 16 12 C -0.14 -2.74 6.41 30.61 0.20 -2.55 16 13 N -0.31 -12.21 11.78 -49.54 -0.58 -12.80 16 14 N -0.37 -16.16 10.88 -58.00 -0.63 -16.79 16 15 C 0.40 16.10 5.64 260.11 1.47 17.56 16 16 N -0.46 -18.46 4.67 -710.35 -3.31 -21.77 16 17 C 0.21 9.65 4.99 85.56 0.43 10.07 16 18 C -0.55 -28.73 7.55 25.60 0.19 -28.54 16 19 H 0.04 2.53 6.47 -2.91 -0.02 2.51 16 20 C 0.04 1.96 5.46 84.66 0.46 2.43 16 21 N -0.91 -49.11 13.29 21.45 0.28 -48.83 16 22 Si 0.93 43.66 29.54 68.60 2.03 45.69 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.11 4.43 4.66 86.30 0.40 4.83 16 27 C -0.15 -4.75 5.19 -10.79 -0.06 -4.80 16 28 C -0.18 -5.66 10.18 30.60 0.31 -5.35 16 29 C -0.15 -3.96 10.25 30.59 0.31 -3.65 16 30 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.14 1.44 7.85 -2.91 -0.02 1.41 16 32 H 0.08 3.23 6.50 -2.91 -0.02 3.21 16 33 H 0.14 1.94 7.11 -2.38 -0.02 1.92 16 34 H 0.10 2.58 8.13 -2.39 -0.02 2.56 16 35 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.06 1.62 7.73 -2.39 -0.02 1.60 16 37 H 0.42 6.25 8.96 -92.70 -0.83 5.42 16 38 H 0.10 2.48 7.72 -2.39 -0.02 2.46 16 39 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.51 7.45 -2.39 -0.02 1.50 16 41 H 0.04 1.84 5.21 -2.38 -0.01 1.83 16 42 H 0.26 13.72 8.31 -92.70 -0.77 12.95 16 43 H 0.07 2.63 7.65 -2.39 -0.02 2.62 16 44 H 0.03 1.47 6.43 -2.39 -0.02 1.45 16 45 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 47 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 48 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -71.93 401.68 1.22 -70.70 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.15 Total: 25.25 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 7.67 Total: 9.34 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -8.56 Total: -132.62 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.93 1.22 -70.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818150295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.734 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds