Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.35898 * 116.99765 * 2 1 4 4 C 1.38556 * 120.00040 * 0.27011 * 3 2 1 5 5 C 1.39196 * 119.82269 * 180.27657 * 4 3 2 6 6 C 1.48467 * 120.08897 * 179.75298 * 5 4 3 7 7 N 1.34049 * 126.67399 * 359.65996 * 6 5 4 8 8 N 1.28991 * 107.26842 * 179.83470 * 7 6 5 9 9 N 1.28732 * 108.94110 * 0.43592 * 8 7 6 10 10 H 0.97003 * 125.34333 * 179.73579 * 9 8 7 11 11 N 1.28864 * 109.31963 * 359.72522 * 9 8 7 12 12 C 1.39340 * 119.82356 * 359.72501 * 5 4 3 13 13 C 1.38039 * 119.99107 * 0.02562 * 12 5 4 14 14 C 1.38241 * 120.17671 * 0.02562 * 13 12 5 15 15 C 1.50700 * 119.91068 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.46897 * 238.77645 * 15 14 13 17 17 C 1.46904 * 111.00185 * 202.97073 * 16 15 14 18 18 C 1.50697 * 109.46992 * 159.62449 * 17 16 15 19 19 H 1.07995 * 120.00487 * 4.52757 * 18 17 16 20 20 C 1.37879 * 119.99652 * 184.53203 * 18 17 16 21 21 N 1.31513 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47135 * 59.99946 * 22 20 18 24 24 H 1.48502 * 109.46895 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47234 * 299.99662 * 22 20 18 26 26 C 1.46904 * 111.00227 * 79.01319 * 16 15 14 27 27 C 1.52993 * 109.47357 * 283.33175 * 26 16 15 28 28 C 1.53001 * 109.47197 * 174.87744 * 27 26 16 29 29 C 1.52992 * 109.47571 * 294.87982 * 27 26 16 30 30 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47074 * 299.99964 * 1 2 3 32 32 H 1.09000 * 109.47026 * 60.00183 * 1 2 3 33 33 H 1.07994 * 120.08883 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00985 * 180.02562 * 12 5 4 35 35 H 1.08000 * 119.91423 * 180.02562 * 13 12 5 36 36 H 1.08996 * 109.47491 * 118.77829 * 15 14 13 37 37 H 1.09004 * 109.47001 * 358.77025 * 15 14 13 38 38 H 1.09001 * 109.46879 * 279.62232 * 17 16 15 39 39 H 1.08997 * 109.46880 * 39.62274 * 17 16 15 40 40 H 0.97008 * 119.99589 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.46964 * 43.33618 * 26 16 15 42 42 H 1.08998 * 109.47030 * 163.32879 * 26 16 15 43 43 H 1.09006 * 109.47191 * 54.87699 * 27 26 16 44 44 H 1.08998 * 109.47047 * 60.00227 * 28 27 26 45 45 H 1.08996 * 109.47167 * 180.02562 * 28 27 26 46 46 H 1.09006 * 109.46642 * 299.99912 * 28 27 26 47 47 H 1.08992 * 109.47584 * 184.81725 * 29 27 26 48 48 H 1.09004 * 109.46666 * 304.81708 * 29 27 26 49 49 H 1.09007 * 109.47588 * 64.80997 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3729 0.0057 5 6 1.9271 3.6112 -0.0002 6 6 1.1242 4.8600 0.0003 7 7 -0.2131 4.9521 -0.0004 8 7 -0.5106 6.2072 0.0039 9 7 0.5779 6.8946 -0.0020 10 1 0.6298 7.8632 -0.0042 11 7 1.5877 6.0941 -0.0044 12 6 3.3190 3.6756 -0.0059 13 6 4.0635 2.5132 -0.0063 14 6 3.4320 1.2835 -0.0015 15 6 4.2507 0.0183 -0.0014 16 7 3.9101 -0.7854 -1.1829 17 6 4.2358 -2.2017 -0.9680 18 6 3.4497 -3.0500 -1.9341 19 1 2.8317 -2.5811 -2.6855 20 6 3.5194 -4.4250 -1.8587 21 7 4.2723 -4.9960 -0.9440 22 14 2.5456 -5.4767 -3.0567 23 1 2.9744 -5.1713 -4.4453 24 1 2.7912 -6.9125 -2.7678 25 1 1.0975 -5.1824 -2.9099 26 6 4.5803 -0.2674 -2.3831 27 6 3.8554 0.9889 -2.8699 28 6 4.6261 1.6007 -4.0416 29 6 2.4431 0.6182 -3.3265 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2128 2.3180 0.0105 34 1 3.8153 4.6348 -0.0100 35 1 5.1423 2.5646 -0.0103 36 1 4.0357 -0.5536 0.9012 37 1 5.3106 0.2714 -0.0274 38 1 5.3020 -2.3582 -1.1314 39 1 3.9797 -2.4824 0.0536 40 1 4.3216 -5.9634 -0.8913 41 1 5.6146 -0.0203 -2.1436 42 1 4.5599 -1.0251 -3.1663 43 1 3.7962 1.7124 -2.0567 44 1 4.6853 0.8773 -4.8548 45 1 4.1099 2.4959 -4.3881 46 1 5.6323 1.8649 -3.7162 47 1 1.9568 1.4958 -3.7524 48 1 2.4993 -0.1675 -4.0799 49 1 1.8668 0.2620 -2.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826168461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = 115.346040 kcal Electronic energy + Delta-G solvation = -31498.013461 eV Core-core repulsion = 27463.772690 eV Total energy + Delta-G solvation = -4034.240771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.60821 -40.19859 -37.55559 -36.99098 -34.55798 -34.01942 -33.63768 -32.40016 -30.98949 -29.99792 -27.35157 -26.96795 -26.58755 -26.22279 -24.83681 -24.35398 -22.92938 -21.89422 -21.19450 -20.34035 -19.42996 -19.27824 -17.67241 -17.29999 -16.29871 -16.01003 -15.53299 -15.42432 -14.97223 -14.81371 -14.48582 -14.25732 -13.99665 -13.67480 -13.40741 -13.28473 -13.06206 -12.76709 -12.48869 -12.39286 -12.18682 -11.84211 -11.70321 -11.61739 -11.56411 -11.40870 -11.28395 -11.13582 -11.09645 -10.89031 -10.87189 -10.65530 -10.64241 -10.53627 -10.26467 -10.10062 -9.83689 -9.58179 -9.17885 -8.50851 -8.33219 -7.78991 -7.10066 -5.92972 -3.92306 0.66061 1.07503 1.57656 2.05008 2.33892 3.38473 3.42440 3.45568 3.54384 3.70470 3.90039 4.08531 4.50147 4.89403 4.95096 5.07528 5.17613 5.30541 5.35588 5.37842 5.42915 5.48751 5.49320 5.54291 5.59138 5.75315 5.82686 5.85781 5.92031 5.97384 6.05965 6.14827 6.18546 6.30036 6.30502 6.37698 6.40617 6.46957 6.54688 6.59084 6.64842 6.69664 6.88021 7.02817 7.08288 7.37853 7.41761 7.77379 7.93633 7.98235 8.22858 8.35384 8.66390 9.15291 9.70623 11.17610 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003087 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.688798 B = 9067.989280 C = 9519.494348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.269 6.269 3 C 0.158 3.842 4 C -0.174 4.174 5 C 0.003 3.997 6 C 0.230 3.770 7 N -0.269 5.269 8 N -0.054 5.054 9 N -0.231 5.231 10 H 0.474 0.526 11 N -0.296 5.296 12 C -0.120 4.120 13 C -0.090 4.090 14 C -0.067 4.067 15 C 0.095 3.905 16 N -0.516 5.516 17 C 0.198 3.802 18 C -0.492 4.492 19 H 0.062 0.938 20 C 0.053 3.947 21 N -0.902 5.902 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.069 3.931 27 C -0.102 4.102 28 C -0.144 4.144 29 C -0.131 4.131 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.034 0.966 38 H -0.014 1.014 39 H 0.032 0.968 40 H 0.259 0.741 41 H 0.016 0.984 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.029 0.971 48 H 0.047 0.953 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 22.060 2.299 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.180 6.180 3 C 0.110 3.890 4 C -0.195 4.195 5 C -0.001 4.001 6 C -0.049 4.049 7 N -0.143 5.143 8 N -0.049 5.049 9 N -0.077 5.077 10 H 0.328 0.672 11 N -0.148 5.148 12 C -0.141 4.141 13 C -0.109 4.109 14 C -0.070 4.070 15 C -0.033 4.033 16 N -0.239 5.239 17 C 0.073 3.927 18 C -0.531 4.531 19 H 0.080 0.920 20 C -0.147 4.147 21 N -0.543 5.543 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.060 4.060 27 C -0.121 4.121 28 C -0.202 4.202 29 C -0.189 4.189 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.074 22.027 2.288 22.719 hybrid contribution 0.496 -0.088 -0.569 0.760 sum -4.578 21.938 1.719 22.477 Atomic orbital electron populations 1.23073 0.79484 1.04095 1.00458 1.86474 1.19957 1.24540 1.87045 1.18586 0.91547 0.84320 0.94500 1.21174 1.00605 0.90772 1.06992 1.16835 0.91398 0.86463 1.05372 1.23792 0.88661 0.91922 1.00552 1.76096 1.12611 1.07708 1.17840 1.78900 1.12524 0.98584 1.14882 1.47718 1.01053 1.12545 1.46387 0.67233 1.74940 1.16017 1.01404 1.22426 1.20865 0.91682 0.98871 1.02688 1.20758 0.99918 0.90563 0.99631 1.19629 0.91271 0.95863 1.00217 1.20996 0.94618 0.91425 0.96308 1.61970 1.57734 1.04244 0.99975 1.19726 0.94150 0.81062 0.97783 1.21106 1.26482 0.90154 1.15342 0.91955 1.24955 0.95842 0.98009 0.95876 1.69948 1.39911 1.10141 1.34272 0.86634 0.80622 0.79099 0.81437 1.20466 1.21585 1.20291 1.22123 0.93292 0.96051 0.94495 1.21362 0.95714 0.97687 0.97338 1.21810 0.99535 1.00009 0.98803 1.21654 0.96362 0.99167 1.01671 0.88084 0.93390 0.92976 0.84533 0.85422 0.85041 0.90078 0.94803 0.99634 0.95040 0.93091 0.96573 0.90417 0.90587 0.93048 0.93556 0.93484 0.95158 0.93415 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.27 -4.56 8.78 -19.42 -0.17 -4.73 16 3 C 0.16 2.43 5.65 -39.26 -0.22 2.21 16 4 C -0.17 -2.41 8.69 -39.11 -0.34 -2.75 16 5 C 0.00 0.04 5.87 -104.92 -0.62 -0.58 16 6 C 0.23 2.92 7.94 -156.30 -1.24 1.68 16 7 N -0.27 -3.53 12.23 32.16 0.39 -3.13 16 8 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 9 N -0.23 -1.83 7.90 60.35 0.48 -1.35 16 10 H 0.47 1.32 8.96 -340.37 -3.05 -1.73 16 11 N -0.30 -3.16 12.08 32.17 0.39 -2.77 16 12 C -0.12 -1.46 9.70 -39.24 -0.38 -1.84 16 13 C -0.09 -1.14 8.05 -39.65 -0.32 -1.46 16 14 C -0.07 -1.02 3.30 -104.42 -0.34 -1.37 16 15 C 0.09 1.66 4.90 -4.98 -0.02 1.63 16 16 N -0.52 -10.52 3.19 -237.52 -0.76 -11.28 16 17 C 0.20 4.98 4.74 -4.98 -0.02 4.96 16 18 C -0.49 -13.51 8.55 -34.44 -0.29 -13.81 16 19 H 0.06 1.71 7.80 -52.49 -0.41 1.30 16 20 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 21 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.07 1.30 4.19 -3.83 -0.02 1.28 16 27 C -0.10 -1.65 2.67 -90.63 -0.24 -1.89 16 28 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 29 C -0.13 -2.22 9.02 37.15 0.34 -1.89 16 30 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.53 7.65 -51.93 -0.40 0.14 16 32 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 33 H 0.14 1.78 6.12 -52.49 -0.32 1.46 16 34 H 0.13 1.33 7.88 -52.49 -0.41 0.92 16 35 H 0.13 1.41 7.94 -52.49 -0.42 0.99 16 36 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 37 H 0.03 0.55 7.38 -51.93 -0.38 0.17 16 38 H -0.01 -0.38 7.99 -51.93 -0.41 -0.80 16 39 H 0.03 0.86 7.55 -51.93 -0.39 0.47 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 41 H 0.02 0.29 7.67 -51.93 -0.40 -0.10 16 42 H 0.08 1.65 7.31 -51.93 -0.38 1.27 16 43 H 0.08 1.19 3.96 -51.93 -0.21 0.99 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.32 6.27 -51.93 -0.33 0.99 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -32.23 396.38 -9.63 -41.85 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -9.97 Total: -2.80 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.49 Total: -12.76 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 2.05 Total: -44.20 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.17 Total: -4.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.23 -9.63 -41.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826168461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.200 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds