Wall clock time and date at job start Wed Apr 1 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.35898 * 116.99765 * 2 1 4 4 C 1.38556 * 120.00040 * 0.27011 * 3 2 1 5 5 C 1.39196 * 119.82269 * 180.27657 * 4 3 2 6 6 C 1.48467 * 120.08897 * 179.75298 * 5 4 3 7 7 N 1.34049 * 126.67399 * 359.65996 * 6 5 4 8 8 N 1.28991 * 107.26842 * 179.83470 * 7 6 5 9 9 N 1.28732 * 108.94110 * 0.43592 * 8 7 6 10 10 H 0.97003 * 125.34333 * 179.73579 * 9 8 7 11 11 N 1.28864 * 109.31963 * 359.72522 * 9 8 7 12 12 C 1.39340 * 119.82356 * 359.72501 * 5 4 3 13 13 C 1.38039 * 119.99107 * 0.02562 * 12 5 4 14 14 C 1.38241 * 120.17671 * 0.02562 * 13 12 5 15 15 C 1.50700 * 119.91068 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.46897 * 238.77645 * 15 14 13 17 17 C 1.46904 * 111.00185 * 202.97073 * 16 15 14 18 18 C 1.50697 * 109.46992 * 159.62449 * 17 16 15 19 19 H 1.07995 * 120.00487 * 4.52757 * 18 17 16 20 20 C 1.37879 * 119.99652 * 184.53203 * 18 17 16 21 21 N 1.31513 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47135 * 59.99946 * 22 20 18 24 24 H 1.48502 * 109.46895 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47234 * 299.99662 * 22 20 18 26 26 C 1.46904 * 111.00227 * 79.01319 * 16 15 14 27 27 C 1.52993 * 109.47357 * 283.33175 * 26 16 15 28 28 C 1.53001 * 109.47197 * 174.87744 * 27 26 16 29 29 C 1.52992 * 109.47571 * 294.87982 * 27 26 16 30 30 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47074 * 299.99964 * 1 2 3 32 32 H 1.09000 * 109.47026 * 60.00183 * 1 2 3 33 33 H 1.07994 * 120.08883 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00985 * 180.02562 * 12 5 4 35 35 H 1.08000 * 119.91423 * 180.02562 * 13 12 5 36 36 H 1.08996 * 109.47491 * 118.77829 * 15 14 13 37 37 H 1.09004 * 109.47001 * 358.77025 * 15 14 13 38 38 H 1.09001 * 109.46879 * 279.62232 * 17 16 15 39 39 H 1.08997 * 109.46880 * 39.62274 * 17 16 15 40 40 H 0.97008 * 119.99589 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.46964 * 43.33618 * 26 16 15 42 42 H 1.08998 * 109.47030 * 163.32879 * 26 16 15 43 43 H 1.09006 * 109.47191 * 54.87699 * 27 26 16 44 44 H 1.08998 * 109.47047 * 60.00227 * 28 27 26 45 45 H 1.08996 * 109.47167 * 180.02562 * 28 27 26 46 46 H 1.09006 * 109.46642 * 299.99912 * 28 27 26 47 47 H 1.08992 * 109.47584 * 184.81725 * 29 27 26 48 48 H 1.09004 * 109.46666 * 304.81708 * 29 27 26 49 49 H 1.09007 * 109.47588 * 64.80997 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3729 0.0057 5 6 1.9271 3.6112 -0.0002 6 6 1.1242 4.8600 0.0003 7 7 -0.2131 4.9521 -0.0004 8 7 -0.5106 6.2072 0.0039 9 7 0.5779 6.8946 -0.0020 10 1 0.6298 7.8632 -0.0042 11 7 1.5877 6.0941 -0.0044 12 6 3.3190 3.6756 -0.0059 13 6 4.0635 2.5132 -0.0063 14 6 3.4320 1.2835 -0.0015 15 6 4.2507 0.0183 -0.0014 16 7 3.9101 -0.7854 -1.1829 17 6 4.2358 -2.2017 -0.9680 18 6 3.4497 -3.0500 -1.9341 19 1 2.8317 -2.5811 -2.6855 20 6 3.5194 -4.4250 -1.8587 21 7 4.2723 -4.9960 -0.9440 22 14 2.5456 -5.4767 -3.0567 23 1 2.9744 -5.1713 -4.4453 24 1 2.7912 -6.9125 -2.7678 25 1 1.0975 -5.1824 -2.9099 26 6 4.5803 -0.2674 -2.3831 27 6 3.8554 0.9889 -2.8699 28 6 4.6261 1.6007 -4.0416 29 6 2.4431 0.6182 -3.3265 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2128 2.3180 0.0105 34 1 3.8153 4.6348 -0.0100 35 1 5.1423 2.5646 -0.0103 36 1 4.0357 -0.5536 0.9012 37 1 5.3106 0.2714 -0.0274 38 1 5.3020 -2.3582 -1.1314 39 1 3.9797 -2.4824 0.0536 40 1 4.3216 -5.9634 -0.8913 41 1 5.6146 -0.0203 -2.1436 42 1 4.5599 -1.0251 -3.1663 43 1 3.7962 1.7124 -2.0567 44 1 4.6853 0.8773 -4.8548 45 1 4.1099 2.4959 -4.3881 46 1 5.6323 1.8649 -3.7162 47 1 1.9568 1.4958 -3.7524 48 1 2.4993 -0.1675 -4.0799 49 1 1.8668 0.2620 -2.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826168461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:47 Heat of formation + Delta-G solvation = 95.194781 kcal Electronic energy + Delta-G solvation = -31498.887285 eV Core-core repulsion = 27463.772690 eV Total energy + Delta-G solvation = -4035.114595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.44040 -41.33377 -38.92882 -38.20220 -35.52415 -35.43566 -34.80181 -34.14097 -32.20254 -31.06300 -29.11708 -28.10240 -27.82586 -27.59000 -25.97595 -25.58641 -24.26746 -22.93063 -22.61749 -21.70456 -20.69132 -20.22239 -18.74728 -18.34647 -18.11934 -17.20550 -16.86476 -16.58227 -16.43687 -16.09260 -16.00357 -15.46763 -15.17694 -15.06301 -14.71231 -14.51690 -14.24685 -14.12283 -13.83197 -13.73027 -13.36132 -13.23169 -13.03935 -12.94210 -12.82985 -12.64719 -12.58873 -12.42745 -12.37128 -12.31770 -12.14989 -12.08193 -12.00744 -11.82885 -11.71547 -11.56471 -11.33722 -11.18665 -11.01278 -10.51399 -9.56696 -8.90488 -8.78985 -8.10015 -6.17693 -0.28466 0.19912 0.55300 1.35128 1.42681 1.44569 1.45174 1.52799 2.45413 2.59074 2.70387 2.83797 3.20340 3.20881 3.46402 3.84997 3.99826 4.12943 4.18637 4.27550 4.29459 4.35080 4.45486 4.49047 4.50078 4.56974 4.58678 4.66953 4.76495 4.83507 4.86276 4.92251 4.98071 4.98150 5.04029 5.15379 5.22258 5.27842 5.34158 5.35362 5.42942 5.46919 5.55191 5.64360 5.67449 5.72239 5.77537 5.84813 6.20483 6.57425 6.67163 6.81372 6.98027 7.13732 7.50284 8.99614 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.003087 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.688798 B = 9067.989280 C = 9519.494348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.305 6.305 3 C 0.147 3.853 4 C -0.176 4.176 5 C 0.005 3.995 6 C 0.214 3.786 7 N -0.296 5.296 8 N -0.058 5.058 9 N -0.200 5.200 10 H 0.495 0.505 11 N -0.289 5.289 12 C -0.111 4.111 13 C -0.079 4.079 14 C -0.086 4.086 15 C 0.098 3.902 16 N -0.517 5.517 17 C 0.215 3.785 18 C -0.501 4.501 19 H 0.057 0.943 20 C 0.002 3.998 21 N -0.937 5.937 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.270 1.270 26 C 0.072 3.928 27 C -0.094 4.094 28 C -0.139 4.139 29 C -0.126 4.126 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.060 0.940 37 H 0.047 0.953 38 H -0.042 1.042 39 H 0.002 0.998 40 H 0.261 0.739 41 H 0.023 0.977 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.031 0.969 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 25.212 1.452 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.100 3.900 4 C -0.197 4.197 5 C 0.001 3.999 6 C -0.065 4.065 7 N -0.168 5.168 8 N -0.053 5.053 9 N -0.051 5.051 10 H 0.354 0.646 11 N -0.142 5.142 12 C -0.132 4.132 13 C -0.097 4.097 14 C -0.089 4.089 15 C -0.030 4.030 16 N -0.240 5.240 17 C 0.089 3.911 18 C -0.539 4.539 19 H 0.076 0.924 20 C -0.196 4.196 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.195 1.195 26 C -0.056 4.056 27 C -0.112 4.112 28 C -0.197 4.197 29 C -0.184 4.184 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.079 0.921 37 H 0.065 0.935 38 H -0.024 1.024 39 H 0.020 0.980 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.385 25.228 1.437 25.837 hybrid contribution 0.573 -0.882 -0.251 1.081 sum -4.813 24.346 1.186 24.846 Atomic orbital electron populations 1.23192 0.78108 1.04377 1.01681 1.86410 1.21710 1.26029 1.87529 1.18709 0.91783 0.84285 0.95232 1.21172 1.00749 0.90632 1.07108 1.16992 0.92057 0.86464 1.04338 1.23715 0.88660 0.92311 1.01848 1.76086 1.13057 1.08784 1.18900 1.78855 1.13056 0.98187 1.15188 1.47792 0.99958 1.13475 1.43850 0.64623 1.74891 1.16455 1.00925 1.21881 1.21078 0.91171 0.99533 1.01384 1.20970 1.01118 0.89554 0.98088 1.19469 0.91050 0.95492 1.02855 1.20932 0.95929 0.92014 0.94101 1.61893 1.58154 1.02098 1.01838 1.19327 0.91979 0.84254 0.95506 1.21363 1.26318 0.90817 1.15448 0.92433 1.25790 0.96826 0.99365 0.97572 1.70077 1.41385 1.10434 1.35960 0.85592 0.79324 0.77280 0.79333 1.19617 1.21113 1.19517 1.22114 0.94125 0.96487 0.92877 1.21304 0.95037 0.96294 0.98586 1.21772 1.00131 1.00318 0.97489 1.21590 0.96939 0.99368 1.00484 0.88339 0.91592 0.92243 0.84201 0.83028 0.82695 0.92139 0.93451 1.02425 0.98009 0.93020 0.95841 0.93472 0.89532 0.93614 0.91775 0.92116 0.93264 0.94974 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.30 -10.69 8.78 -92.40 -0.81 -11.50 16 3 C 0.15 4.51 5.65 22.48 0.13 4.63 16 4 C -0.18 -4.69 8.69 22.58 0.20 -4.49 16 5 C 0.01 0.12 5.87 -20.05 -0.12 0.00 16 6 C 0.21 4.91 7.94 137.38 1.09 6.00 16 7 N -0.30 -7.18 12.23 -52.17 -0.64 -7.82 16 8 N -0.06 -1.10 13.47 37.02 0.50 -0.61 16 9 N -0.20 -2.52 7.90 37.02 0.29 -2.23 16 10 H 0.49 0.99 8.96 -347.53 -3.12 -2.13 16 11 N -0.29 -5.20 12.08 -52.12 -0.63 -5.82 16 12 C -0.11 -2.34 9.70 22.49 0.22 -2.12 16 13 C -0.08 -1.80 8.05 22.22 0.18 -1.62 16 14 C -0.09 -2.57 3.30 -19.73 -0.07 -2.63 16 15 C 0.10 3.51 4.90 85.56 0.42 3.93 16 16 N -0.52 -21.90 3.19 -905.37 -2.88 -24.79 16 17 C 0.22 11.50 4.74 85.56 0.41 11.90 16 18 C -0.50 -28.61 8.55 25.60 0.22 -28.39 16 19 H 0.06 3.28 7.80 -2.91 -0.02 3.26 16 20 C 0.00 0.09 5.46 84.66 0.46 0.55 16 21 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 22 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.07 2.76 4.19 86.30 0.36 3.12 16 27 C -0.09 -2.90 2.67 -10.80 -0.03 -2.93 16 28 C -0.14 -3.54 9.19 71.98 0.66 -2.88 16 29 C -0.13 -4.22 9.02 71.98 0.65 -3.58 16 30 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 1.48 7.65 -2.39 -0.02 1.46 16 32 H 0.06 1.46 7.67 -2.39 -0.02 1.44 16 33 H 0.14 3.56 6.12 -2.91 -0.02 3.54 16 34 H 0.15 2.48 7.88 -2.91 -0.02 2.46 16 35 H 0.16 2.78 7.94 -2.91 -0.02 2.75 16 36 H 0.06 2.37 7.52 -2.39 -0.02 2.35 16 37 H 0.05 1.54 7.38 -2.39 -0.02 1.52 16 38 H -0.04 -2.41 7.99 -2.39 -0.02 -2.43 16 39 H 0.00 0.10 7.55 -2.39 -0.02 0.09 16 40 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 41 H 0.02 0.85 7.67 -2.38 -0.02 0.83 16 42 H 0.05 2.07 7.31 -2.39 -0.02 2.05 16 43 H 0.09 2.54 3.96 -2.38 -0.01 2.53 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.05 1.95 6.27 -2.38 -0.01 1.94 16 Total: -1.00 -71.80 396.38 1.89 -69.90 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.14 Total: 9.22 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 5.89 Total: -16.82 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.08 Total: -98.10 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.81 Total: -11.50 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.80 1.89 -69.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826168461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.099 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds