Wall clock time and date at job start Wed Apr 1 2020 04:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 N 1.46906 * 109.47088 * 240.00431 * 2 1 3 5 5 C 1.46899 * 111.00049 * 84.99950 * 4 2 1 6 6 C 1.50699 * 109.47104 * 180.02562 * 5 4 2 7 7 C 1.38286 * 119.92533 * 90.00165 * 6 5 4 8 8 C 1.38104 * 120.07376 * 180.25715 * 7 6 5 9 9 C 1.38918 * 119.92017 * 359.44392 * 8 7 6 10 10 N 1.39676 * 120.07049 * 180.30184 * 9 8 7 11 11 C 1.46502 * 119.99924 * 180.25823 * 10 9 8 12 12 C 1.46500 * 120.00213 * 0.25045 * 10 9 8 13 13 C 1.50692 * 109.47029 * 90.00163 * 12 10 9 14 14 H 1.07998 * 120.00179 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00178 * 180.02562 * 13 12 10 16 16 N 1.31521 * 119.99945 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00333 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47071 * 59.99714 * 17 15 13 19 19 H 1.48500 * 109.47149 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46705 * 299.99783 * 17 15 13 21 21 C 1.38905 * 119.85194 * 0.55157 * 9 8 7 22 22 C 1.38099 * 119.92845 * 359.72525 * 21 9 8 23 23 C 1.50697 * 109.47371 * 120.00291 * 2 1 3 24 24 N 1.30333 * 126.35973 * 75.02027 * 23 2 1 25 25 N 1.28532 * 109.99753 * 180.02562 * 24 23 2 26 26 C 1.31032 * 109.85564 * 0.02562 * 25 24 23 27 27 O 1.35540 * 126.44643 * 180.02562 * 26 25 24 28 28 N 1.36309 * 107.10571 * 359.73465 * 26 25 24 29 29 C 1.46498 * 127.11932 * 180.28023 * 28 26 25 30 30 H 1.08993 * 109.47209 * 59.99676 * 1 2 3 31 31 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46887 * 299.99366 * 1 2 3 33 33 H 1.00899 * 110.99510 * 321.04782 * 4 2 1 34 34 H 1.09006 * 109.47061 * 59.99820 * 5 4 2 35 35 H 1.09004 * 109.46817 * 300.00324 * 5 4 2 36 36 H 1.08002 * 119.96057 * 359.97173 * 7 6 5 37 37 H 1.07998 * 120.04042 * 179.72222 * 8 7 6 38 38 H 1.08990 * 109.47426 * 89.99418 * 11 10 9 39 39 H 1.09005 * 109.46823 * 210.00050 * 11 10 9 40 40 H 1.09005 * 109.46514 * 329.99017 * 11 10 9 41 41 H 1.09003 * 109.47215 * 210.00592 * 12 10 9 42 42 H 1.09002 * 109.46876 * 330.00328 * 12 10 9 43 43 H 0.96995 * 119.99824 * 180.02562 * 16 15 13 44 44 H 1.08006 * 120.03717 * 179.70113 * 21 9 8 45 45 H 1.07997 * 119.96598 * 179.97438 * 22 21 9 46 46 H 0.96706 * 114.00047 * 89.97101 * 27 26 25 47 47 H 1.09001 * 109.47555 * 270.15396 * 29 28 26 48 48 H 1.09000 * 109.47193 * 30.15517 * 29 28 26 49 49 H 1.09004 * 109.47014 * 150.15614 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5873 -0.5216 -3.5561 7 6 1.6926 -1.1514 -4.4018 8 6 2.1523 -1.8388 -5.5078 9 6 3.5143 -1.8875 -5.7767 10 7 3.9821 -2.5765 -6.8980 11 6 5.4193 -2.6316 -7.1769 12 6 3.0358 -3.2443 -7.7950 13 6 2.6066 -2.2861 -8.8759 14 1 2.9997 -1.2804 -8.8933 15 6 1.7119 -2.6933 -9.8428 16 7 1.2334 -3.9182 -9.8220 17 14 1.1803 -1.5056 -11.1832 18 1 2.3699 -1.0677 -11.9567 19 1 0.2209 -2.1825 -12.0923 20 1 0.5280 -0.3228 -10.5662 21 6 4.4102 -1.2537 -4.9252 22 6 3.9443 -0.5728 -3.8177 23 6 2.0324 -0.7104 1.2304 24 7 2.0342 -1.9980 1.4326 25 7 2.5331 -2.2609 2.5876 26 6 2.8776 -1.1479 3.1873 27 8 3.4361 -1.0356 4.4172 28 7 2.5745 -0.1249 2.3390 29 6 2.7845 1.3065 2.5696 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.4495 -1.4978 -1.4101 34 1 2.7589 1.0464 -2.1182 35 1 1.0870 0.6165 -2.5525 36 1 0.6335 -1.1094 -4.1945 37 1 1.4533 -2.3342 -6.1655 38 1 5.8514 -3.5039 -6.6868 39 1 5.5780 -2.7035 -8.2530 40 1 5.8976 -1.7280 -6.7988 41 1 3.5151 -4.1122 -8.2481 42 1 2.1627 -3.5665 -7.2274 43 1 0.6044 -4.2047 -10.5024 44 1 5.4702 -1.2937 -5.1287 45 1 4.6403 -0.0802 -3.1550 46 1 4.4029 -1.0582 4.4136 47 1 1.9017 1.7308 3.0479 48 1 3.6508 1.4471 3.2160 49 1 2.9571 1.8065 1.6166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895183261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:54 Heat of formation + Delta-G solvation = 58.243986 kcal Electronic energy + Delta-G solvation = -29222.744468 eV Core-core repulsion = 25186.027566 eV Total energy + Delta-G solvation = -4036.716902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.04032 -40.43453 -38.79823 -38.22232 -36.94208 -35.85692 -34.76727 -32.84563 -31.84418 -30.48581 -29.69257 -29.39367 -28.45345 -27.05493 -25.73723 -24.71215 -23.66642 -23.15055 -22.88623 -21.43593 -20.98472 -19.79413 -18.62011 -18.23517 -17.89525 -17.51071 -16.96393 -16.71954 -16.28852 -16.05568 -15.62954 -15.53101 -15.38628 -15.20761 -14.74017 -14.43219 -14.27343 -14.19600 -14.02919 -13.91987 -13.68346 -13.57964 -13.22594 -13.16063 -13.09843 -12.91882 -12.83003 -12.64971 -12.62977 -12.51190 -12.26354 -12.15920 -11.91766 -11.74226 -11.37003 -11.18036 -11.13995 -10.63075 -10.41157 -10.10779 -9.62049 -9.32756 -8.34456 -7.77973 -6.36435 0.57265 0.76089 0.88396 1.16828 1.38065 1.40008 1.48462 1.72304 2.35288 2.65832 2.81166 3.02855 3.07284 3.33374 3.50578 3.76691 3.88773 4.07823 4.09919 4.22437 4.29728 4.35015 4.41013 4.43546 4.54802 4.60690 4.65673 4.66849 4.73271 4.76989 4.84811 4.88740 4.93693 4.95014 4.97387 5.04526 5.16490 5.22230 5.23893 5.37205 5.61385 5.62496 5.71186 5.72854 5.95695 6.08270 6.08862 6.27651 6.39740 6.46345 6.52185 6.83922 6.96393 7.35310 7.66884 8.84509 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.001918 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.085768 B =14593.073725 C =15030.990773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.178 3.822 3 H 0.127 0.873 4 N -0.684 5.684 5 C 0.124 3.876 6 C -0.159 4.159 7 C -0.065 4.065 8 C -0.218 4.218 9 C 0.211 3.789 10 N -0.633 5.633 11 C 0.098 3.902 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.271 1.271 21 C -0.221 4.221 22 C -0.048 4.048 23 C 0.210 3.790 24 N -0.309 5.309 25 N -0.338 5.338 26 C 0.344 3.656 27 O -0.437 6.437 28 N -0.479 5.479 29 C 0.062 3.938 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.348 0.652 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.007 0.993 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.129 0.871 45 H 0.141 0.859 46 H 0.427 0.573 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 16.984 25.753 31.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.065 3.935 3 H 0.145 0.855 4 N -0.316 5.316 5 C -0.003 4.003 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.241 4.241 9 C 0.106 3.894 10 N -0.341 5.341 11 C -0.044 4.044 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.244 4.244 22 C -0.067 4.067 23 C -0.059 4.059 24 N -0.150 5.150 25 N -0.188 5.188 26 C 0.038 3.962 27 O -0.240 6.240 28 N -0.182 5.182 29 C -0.079 4.079 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.025 0.975 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.288 0.712 47 H 0.115 0.885 48 H 0.127 0.873 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.575 15.427 25.771 30.382 hybrid contribution -0.586 0.965 -1.097 1.574 sum 3.989 16.392 24.674 29.890 Atomic orbital electron populations 1.22443 0.93919 1.02956 1.04036 1.19879 0.93705 0.96596 0.83276 0.85522 1.60297 1.58278 1.09995 1.03022 1.20716 1.00358 0.93469 0.85806 1.19516 0.93223 1.05014 0.98433 1.20877 0.99658 0.95019 0.92906 1.20773 0.94177 1.07588 1.01571 1.18262 0.93341 0.90862 0.86924 1.46962 1.06561 1.55736 1.24849 1.21586 0.80371 1.01574 1.00919 1.18760 0.87648 0.91498 0.87602 1.21734 1.26145 0.98748 1.11276 0.93136 1.25828 0.95922 0.96955 1.00206 1.70043 1.31970 1.18553 1.36126 0.85525 0.78274 0.78817 0.78565 1.19378 1.20512 1.19627 1.20803 0.98920 1.06186 0.98478 1.20885 0.95255 0.95862 0.94697 1.25025 0.99830 0.90382 0.90704 1.74117 1.18939 1.13321 1.08663 1.74498 1.18454 1.22715 1.03161 1.22050 1.02767 0.84206 0.87162 1.84874 1.28681 1.93903 1.16561 1.46791 1.47056 1.10626 1.13737 1.22530 1.05350 0.73904 1.06085 0.89504 0.92998 0.90910 0.83256 0.88594 0.92951 0.85556 0.88886 0.93245 0.92533 0.90250 0.97533 0.97212 0.92415 0.85320 0.84165 0.71194 0.88493 0.87271 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.14 71.98 0.66 -1.47 16 2 C 0.18 2.44 2.99 44.17 0.13 2.57 16 3 H 0.13 0.88 6.61 -2.39 -0.02 0.87 16 4 N -0.68 -12.91 6.22 -499.44 -3.11 -16.01 16 5 C 0.12 2.14 5.61 85.56 0.48 2.62 16 6 C -0.16 -4.20 5.39 -19.84 -0.11 -4.31 16 7 C -0.07 -2.11 9.69 22.25 0.22 -1.89 16 8 C -0.22 -9.09 9.21 22.40 0.21 -8.89 16 9 C 0.21 8.68 6.55 38.21 0.25 8.93 16 10 N -0.63 -28.27 2.99 -726.56 -2.17 -30.44 16 11 C 0.10 3.51 10.19 127.77 1.30 4.81 16 12 C 0.27 14.27 4.92 85.63 0.42 14.69 16 13 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 14 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 15 C 0.01 0.57 5.46 84.65 0.46 1.03 16 16 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 17 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.22 -7.32 9.21 22.40 0.21 -7.12 16 22 C -0.05 -1.32 9.69 22.25 0.22 -1.10 16 23 C 0.21 4.13 6.91 137.67 0.95 5.08 16 24 N -0.31 -8.86 12.18 -49.61 -0.60 -9.46 16 25 N -0.34 -9.75 12.22 -173.67 -2.12 -11.87 16 26 C 0.34 6.87 9.22 179.70 1.66 8.53 16 27 O -0.44 -5.67 13.62 -88.45 -1.20 -6.88 16 28 N -0.48 -7.03 3.20 -652.24 -2.09 -9.12 16 29 C 0.06 0.20 11.02 127.77 1.41 1.60 16 30 H 0.09 0.83 7.45 -2.39 -0.02 0.82 16 31 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.35 7.82 8.46 -89.69 -0.76 7.06 16 34 H 0.10 1.25 8.00 -2.38 -0.02 1.23 16 35 H 0.05 0.77 7.38 -2.39 -0.02 0.75 16 36 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.09 4.51 6.14 -2.91 -0.02 4.49 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 2.08 8.07 -2.38 -0.02 2.07 16 40 H 0.08 2.38 6.20 -2.38 -0.01 2.37 16 41 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 42 H 0.01 0.57 6.19 -2.39 -0.01 0.56 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.13 3.75 6.14 -2.91 -0.02 3.73 16 45 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 46 H 0.43 0.91 9.06 -74.05 -0.67 0.24 16 47 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.11 -0.08 7.10 -2.39 -0.02 -0.10 16 Total: -1.00 -80.14 406.97 -0.73 -80.86 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.44 Total: 16.72 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 8.70 Total: -5.21 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -9.81 Total: -131.59 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -1.20 Total: -6.88 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -80.14 -0.73 -80.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895183261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.105 kcal (2) G-P(sol) polarization free energy of solvation -80.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds