Wall clock time and date at job start Wed Apr 1 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.77859 * 2 1 4 4 C 1.54317 * 110.71746 * 236.75678 * 2 1 3 5 5 N 1.47028 * 107.27236 * 219.44309 * 4 2 1 6 6 C 1.34774 * 125.64851 * 178.97957 * 5 4 2 7 7 O 1.21512 * 120.00321 * 0.02562 * 6 5 4 8 8 C 1.48135 * 119.99725 * 180.02562 * 6 5 4 9 9 C 1.39243 * 120.04715 * 179.97438 * 8 6 5 10 10 N 1.32190 * 120.06692 * 180.02562 * 9 8 6 11 11 C 1.31927 * 120.16802 * 359.97438 * 10 9 8 12 12 C 1.39667 * 120.09029 * 0.02861 * 11 10 9 13 13 N 1.38976 * 120.03253 * 179.97438 * 12 11 10 14 14 C 1.48537 * 111.00083 * 177.27030 * 13 12 11 15 15 C 1.54937 * 103.22356 * 159.71620 * 14 13 12 16 16 C 1.54589 * 102.92590 * 322.58379 * 15 14 13 17 17 C 1.47900 * 110.99661 * 294.66554 * 13 12 11 18 18 N 1.32349 * 119.93430 * 359.71483 * 12 11 10 19 19 C 1.47422 * 108.69993 * 358.94464 * 5 4 2 20 20 C 1.54915 * 104.83281 * 24.12727 * 19 5 4 21 21 H 1.08994 * 111.00353 * 81.06905 * 20 19 5 22 22 N 1.46507 * 111.00082 * 204.91604 * 20 19 5 23 23 C 1.36939 * 119.99635 * 267.19594 * 22 20 19 24 24 H 1.08000 * 120.00447 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99503 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00281 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47249 * 89.99628 * 27 25 23 29 29 H 1.48503 * 109.47162 * 209.99625 * 27 25 23 30 30 H 1.48499 * 109.47252 * 329.99388 * 27 25 23 31 31 H 1.09000 * 109.47873 * 181.78773 * 1 2 3 32 32 H 1.09000 * 109.47500 * 301.78518 * 1 2 3 33 33 H 1.09001 * 109.47122 * 61.78658 * 1 2 3 34 34 H 1.08991 * 109.88735 * 338.86186 * 4 2 1 35 35 H 1.08999 * 109.88046 * 99.87882 * 4 2 1 36 36 H 1.08003 * 119.96784 * 359.97438 * 9 8 6 37 37 H 1.07997 * 119.95887 * 179.97438 * 11 10 9 38 38 H 1.08991 * 110.66335 * 278.15094 * 14 13 12 39 39 H 1.08997 * 110.66242 * 41.28397 * 14 13 12 40 40 H 1.09006 * 110.72218 * 204.22410 * 15 14 13 41 41 H 1.08999 * 110.72332 * 80.94837 * 15 14 13 42 42 H 1.09003 * 110.31408 * 263.04116 * 16 15 14 43 43 H 1.09003 * 110.31392 * 140.87365 * 16 15 14 44 44 H 1.08999 * 109.91786 * 333.50831 * 17 13 12 45 45 H 1.09001 * 109.91828 * 94.80181 * 17 13 12 46 46 H 1.09005 * 110.36795 * 142.96539 * 19 5 4 47 47 H 1.09004 * 110.36749 * 265.17931 * 19 5 4 48 48 H 0.96995 * 119.99759 * 87.19595 * 22 20 19 49 49 H 0.97003 * 120.00187 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7913 -1.2072 5 7 3.2444 -1.5508 -0.7389 6 6 3.9922 -2.3837 -1.4896 7 8 3.7191 -2.5562 -2.6610 8 6 5.1470 -3.0888 -0.8867 9 6 5.9200 -3.9499 -1.6612 10 7 6.9503 -4.5798 -1.1234 11 6 7.2504 -4.3948 0.1478 12 6 6.4797 -3.5326 0.9310 13 7 6.7966 -3.3391 2.2702 14 6 5.8919 -2.3385 2.8921 15 6 6.0215 -2.6367 4.4070 16 6 6.1275 -4.1784 4.4481 17 6 6.6117 -4.5858 3.0441 18 7 5.4504 -2.8962 0.3952 19 6 3.4632 -1.2498 0.6876 20 6 2.0788 -0.7954 1.2138 21 1 1.4451 -1.6535 1.4376 22 7 2.2214 0.0697 2.3875 23 6 2.1867 -0.4713 3.6451 24 1 2.0538 -1.5356 3.7717 25 6 2.3213 0.3485 4.7572 26 7 2.4827 1.6456 4.6030 27 14 2.2732 -0.3893 6.4726 28 1 3.6488 -0.7621 6.8898 29 1 1.7201 0.6072 7.4247 30 1 1.4125 -1.5994 6.4671 31 1 -0.3635 -1.0271 0.0321 32 1 -0.3634 0.5413 0.8735 33 1 -0.3633 0.4858 -0.9056 34 1 1.3129 -1.4759 -1.5774 35 1 2.3715 -0.1026 -1.9987 36 1 5.6770 -4.1041 -2.7022 37 1 8.0927 -4.9114 0.5838 38 1 6.2274 -1.3257 2.6693 39 1 4.8655 -2.4874 2.5571 40 1 5.1361 -2.2965 4.9442 41 1 6.9218 -2.1771 4.8149 42 1 5.1523 -4.6194 4.6547 43 1 6.8510 -4.4880 5.2024 44 1 5.8638 -5.2150 2.5615 45 1 7.5586 -5.1206 3.1185 46 1 3.7959 -2.1427 1.2170 47 1 4.1945 -0.4492 0.7986 48 1 2.3404 1.0256 2.2738 49 1 2.5771 2.2184 5.3801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939260834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:33 Heat of formation + Delta-G solvation = 56.317670 kcal Electronic energy + Delta-G solvation = -31947.769364 eV Core-core repulsion = 27910.968931 eV Total energy + Delta-G solvation = -4036.800433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61132 -39.72622 -38.73515 -37.53145 -34.66847 -34.05202 -33.04806 -32.24047 -30.74542 -29.49961 -29.09580 -27.57429 -26.82011 -25.15634 -24.09422 -23.89706 -21.84420 -21.18722 -20.99739 -20.00575 -19.67336 -17.95552 -17.37209 -17.17270 -16.85427 -16.38046 -16.24480 -15.83289 -15.51801 -15.00762 -14.41552 -14.10314 -13.97192 -13.64635 -13.42174 -13.21456 -13.07424 -12.94183 -12.80301 -12.63534 -12.59645 -12.43166 -12.08631 -11.69954 -11.56811 -11.43160 -11.28015 -11.13451 -11.05881 -11.00601 -10.71227 -10.65679 -10.49758 -10.33820 -10.26733 -10.03436 -9.88511 -9.79269 -9.25921 -8.93784 -8.56525 -8.30554 -7.11054 -5.89306 -3.19274 0.30491 0.90658 2.70492 2.96259 3.31085 3.31736 3.38679 3.40855 3.67749 3.97430 4.09666 4.33635 4.45270 4.53765 4.69809 4.80624 4.86248 5.00770 5.05746 5.13007 5.18503 5.21348 5.33409 5.41383 5.52136 5.60419 5.62100 5.74546 5.79301 5.80848 5.87898 5.90597 5.96599 6.01158 6.03482 6.21035 6.23923 6.24751 6.25670 6.42316 6.47303 6.49536 6.57118 6.63058 6.85576 6.88784 7.10640 7.52116 7.57551 7.67573 8.15537 8.27971 9.39966 9.94141 10.29834 11.32680 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005437 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.165075 B = 5148.387550 C = 8183.263277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.589 5.589 6 C 0.581 3.419 7 O -0.543 6.543 8 C 0.066 3.934 9 C 0.073 3.927 10 N -0.424 5.424 11 C 0.067 3.933 12 C 0.256 3.744 13 N -0.458 5.458 14 C 0.044 3.956 15 C -0.126 4.126 16 C -0.130 4.130 17 C 0.044 3.956 18 N -0.436 5.436 19 C 0.074 3.926 20 C 0.174 3.826 21 H 0.066 0.934 22 N -0.707 5.707 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.005 4.005 26 N -0.928 5.928 27 Si 0.900 3.100 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.181 0.819 37 H 0.174 0.826 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.387 0.613 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -10.464 -5.900 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.320 5.320 6 C 0.367 3.633 7 O -0.421 6.421 8 C -0.076 4.076 9 C -0.086 4.086 10 N -0.137 5.137 11 C -0.099 4.099 12 C 0.019 3.981 13 N -0.178 5.178 14 C -0.081 4.081 15 C -0.164 4.164 16 C -0.169 4.169 17 C -0.081 4.081 18 N -0.159 5.159 19 C -0.051 4.051 20 C 0.061 3.939 21 H 0.084 0.916 22 N -0.347 5.347 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.201 4.201 26 N -0.575 5.575 27 Si 0.730 3.270 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.197 0.803 37 H 0.191 0.809 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.221 0.779 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.585 -10.485 -6.340 13.910 hybrid contribution -0.460 -0.081 0.981 1.086 sum 6.125 -10.565 -5.359 13.336 Atomic orbital electron populations 1.21646 0.93880 1.01720 1.01778 1.22547 0.96503 0.99856 0.94710 0.89736 1.22073 0.87138 0.94434 0.97187 1.48380 1.28621 1.41823 1.13145 1.17327 0.81512 0.79402 0.85104 1.90769 1.70706 1.65174 1.15464 1.22024 0.97448 0.97674 0.90494 1.23575 0.90706 0.92526 1.01805 1.68519 1.14216 1.19777 1.11173 1.23581 0.99473 0.96920 0.89921 1.21257 0.90155 0.92908 0.93776 1.62107 1.48549 1.09235 0.97869 1.23379 0.96398 0.95413 0.92958 1.22542 1.03443 0.94441 0.96013 1.22431 1.01806 0.97194 0.95424 1.22960 1.01426 0.89949 0.93793 1.68818 1.13158 1.22461 1.11416 1.23942 1.01221 1.02120 0.77805 1.21458 0.92190 0.93545 0.86717 0.91639 1.42258 1.86187 1.06194 1.00052 1.19167 1.42641 0.92476 0.83062 0.91240 1.24694 1.02449 0.95357 0.97639 1.69644 1.55957 1.02678 1.29222 0.86318 0.77731 0.78020 0.84883 1.21424 1.21770 1.20757 0.92922 0.91353 0.93249 0.91330 0.91654 0.80250 0.80911 0.89127 0.89814 0.89382 0.90810 0.90876 0.90576 0.92950 0.89353 0.88567 0.91439 0.77875 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.13 37.16 0.34 -1.51 16 2 C -0.12 -1.79 3.20 -88.79 -0.28 -2.07 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 4 C 0.11 1.70 6.46 -3.06 -0.02 1.68 16 5 N -0.59 -9.64 3.33 -171.52 -0.57 -10.21 16 6 C 0.58 9.70 7.84 -12.20 -0.10 9.61 16 7 O -0.54 -9.86 16.66 5.36 0.09 -9.77 16 8 C 0.07 1.00 6.71 -82.87 -0.56 0.44 16 9 C 0.07 0.99 10.76 -17.02 -0.18 0.81 16 10 N -0.42 -5.49 10.48 -12.54 -0.13 -5.62 16 11 C 0.07 0.79 10.70 -16.98 -0.18 0.61 16 12 C 0.26 3.44 6.01 -154.89 -0.93 2.51 16 13 N -0.46 -5.80 5.30 -169.09 -0.90 -6.69 16 14 C 0.04 0.65 6.00 -1.90 -0.01 0.64 16 15 C -0.13 -1.68 7.06 -24.87 -0.18 -1.85 16 16 C -0.13 -1.37 6.93 -25.38 -0.18 -1.55 16 17 C 0.04 0.45 6.28 -2.75 -0.02 0.44 16 18 N -0.44 -6.61 5.32 -8.81 -0.05 -6.66 16 19 C 0.07 1.28 5.60 -2.53 -0.01 1.27 16 20 C 0.17 3.15 3.16 -65.78 -0.21 2.94 16 21 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 22 N -0.71 -15.73 5.24 -51.34 -0.27 -16.00 16 23 C -0.24 -5.98 9.96 -15.06 -0.15 -6.13 16 24 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -25.83 13.06 55.49 0.72 -25.11 16 27 Si 0.90 20.51 29.55 -169.99 -5.02 15.49 16 28 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 31 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.18 2.19 7.64 -52.48 -0.40 1.79 16 37 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.38 5.15 -51.93 -0.27 1.11 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 1.71 3.83 -51.93 -0.20 1.51 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.39 9.31 7.76 -40.82 -0.32 8.99 16 49 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -28.32 391.25 -10.43 -38.75 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.44 Total: 12.32 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -2.76 Total: 7.61 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.19 Total: -70.29 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.32 -10.43 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939260834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.063 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds