Wall clock time and date at job start Wed Apr 1 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.77859 * 2 1 4 4 C 1.54317 * 110.71746 * 236.75678 * 2 1 3 5 5 N 1.47028 * 107.27236 * 219.44309 * 4 2 1 6 6 C 1.34774 * 125.64851 * 178.97957 * 5 4 2 7 7 O 1.21512 * 120.00321 * 0.02562 * 6 5 4 8 8 C 1.48135 * 119.99725 * 180.02562 * 6 5 4 9 9 C 1.39243 * 120.04715 * 179.97438 * 8 6 5 10 10 N 1.32190 * 120.06692 * 180.02562 * 9 8 6 11 11 C 1.31927 * 120.16802 * 359.97438 * 10 9 8 12 12 C 1.39667 * 120.09029 * 0.02861 * 11 10 9 13 13 N 1.38976 * 120.03253 * 179.97438 * 12 11 10 14 14 C 1.48537 * 111.00083 * 177.27030 * 13 12 11 15 15 C 1.54937 * 103.22356 * 159.71620 * 14 13 12 16 16 C 1.54589 * 102.92590 * 322.58379 * 15 14 13 17 17 C 1.47900 * 110.99661 * 294.66554 * 13 12 11 18 18 N 1.32349 * 119.93430 * 359.71483 * 12 11 10 19 19 C 1.47422 * 108.69993 * 358.94464 * 5 4 2 20 20 C 1.54915 * 104.83281 * 24.12727 * 19 5 4 21 21 H 1.08994 * 111.00353 * 81.06905 * 20 19 5 22 22 N 1.46507 * 111.00082 * 204.91604 * 20 19 5 23 23 C 1.36939 * 119.99635 * 267.19594 * 22 20 19 24 24 H 1.08000 * 120.00447 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99503 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00281 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99641 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47249 * 89.99628 * 27 25 23 29 29 H 1.48503 * 109.47162 * 209.99625 * 27 25 23 30 30 H 1.48499 * 109.47252 * 329.99388 * 27 25 23 31 31 H 1.09000 * 109.47873 * 181.78773 * 1 2 3 32 32 H 1.09000 * 109.47500 * 301.78518 * 1 2 3 33 33 H 1.09001 * 109.47122 * 61.78658 * 1 2 3 34 34 H 1.08991 * 109.88735 * 338.86186 * 4 2 1 35 35 H 1.08999 * 109.88046 * 99.87882 * 4 2 1 36 36 H 1.08003 * 119.96784 * 359.97438 * 9 8 6 37 37 H 1.07997 * 119.95887 * 179.97438 * 11 10 9 38 38 H 1.08991 * 110.66335 * 278.15094 * 14 13 12 39 39 H 1.08997 * 110.66242 * 41.28397 * 14 13 12 40 40 H 1.09006 * 110.72218 * 204.22410 * 15 14 13 41 41 H 1.08999 * 110.72332 * 80.94837 * 15 14 13 42 42 H 1.09003 * 110.31408 * 263.04116 * 16 15 14 43 43 H 1.09003 * 110.31392 * 140.87365 * 16 15 14 44 44 H 1.08999 * 109.91786 * 333.50831 * 17 13 12 45 45 H 1.09001 * 109.91828 * 94.80181 * 17 13 12 46 46 H 1.09005 * 110.36795 * 142.96539 * 19 5 4 47 47 H 1.09004 * 110.36749 * 265.17931 * 19 5 4 48 48 H 0.96995 * 119.99759 * 87.19595 * 22 20 19 49 49 H 0.97003 * 120.00187 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7913 -1.2072 5 7 3.2444 -1.5508 -0.7389 6 6 3.9922 -2.3837 -1.4896 7 8 3.7191 -2.5562 -2.6610 8 6 5.1470 -3.0888 -0.8867 9 6 5.9200 -3.9499 -1.6612 10 7 6.9503 -4.5798 -1.1234 11 6 7.2504 -4.3948 0.1478 12 6 6.4797 -3.5326 0.9310 13 7 6.7966 -3.3391 2.2702 14 6 5.8919 -2.3385 2.8921 15 6 6.0215 -2.6367 4.4070 16 6 6.1275 -4.1784 4.4481 17 6 6.6117 -4.5858 3.0441 18 7 5.4504 -2.8962 0.3952 19 6 3.4632 -1.2498 0.6876 20 6 2.0788 -0.7954 1.2138 21 1 1.4451 -1.6535 1.4376 22 7 2.2214 0.0697 2.3875 23 6 2.1867 -0.4713 3.6451 24 1 2.0538 -1.5356 3.7717 25 6 2.3213 0.3485 4.7572 26 7 2.4827 1.6456 4.6030 27 14 2.2732 -0.3893 6.4726 28 1 3.6488 -0.7621 6.8898 29 1 1.7201 0.6072 7.4247 30 1 1.4125 -1.5994 6.4671 31 1 -0.3635 -1.0271 0.0321 32 1 -0.3634 0.5413 0.8735 33 1 -0.3633 0.4858 -0.9056 34 1 1.3129 -1.4759 -1.5774 35 1 2.3715 -0.1026 -1.9987 36 1 5.6770 -4.1041 -2.7022 37 1 8.0927 -4.9114 0.5838 38 1 6.2274 -1.3257 2.6693 39 1 4.8655 -2.4874 2.5571 40 1 5.1361 -2.2965 4.9442 41 1 6.9218 -2.1771 4.8149 42 1 5.1523 -4.6194 4.6547 43 1 6.8510 -4.4880 5.2024 44 1 5.8638 -5.2150 2.5615 45 1 7.5586 -5.1206 3.1185 46 1 3.7959 -2.1427 1.2170 47 1 4.1945 -0.4492 0.7986 48 1 2.3404 1.0256 2.2738 49 1 2.5771 2.2184 5.3801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939260834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:32 Heat of formation + Delta-G solvation = 38.772910 kcal Electronic energy + Delta-G solvation = -31948.530162 eV Core-core repulsion = 27910.968931 eV Total energy + Delta-G solvation = -4037.561231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.69225 -41.01472 -39.80089 -38.89181 -35.98085 -35.56266 -34.19844 -33.56944 -32.45359 -30.53454 -30.10387 -29.14918 -28.01556 -26.32560 -25.69641 -25.12372 -23.18512 -22.31720 -22.06668 -21.37231 -20.90616 -19.16303 -19.04516 -18.43723 -17.87203 -17.51414 -17.47224 -17.02900 -16.84169 -16.42930 -15.90267 -15.38737 -15.28227 -15.05989 -14.60313 -14.49527 -14.37890 -14.33853 -14.12753 -13.81179 -13.59669 -13.51246 -13.28572 -13.05096 -12.97823 -12.84919 -12.64661 -12.42144 -12.27839 -12.18832 -12.14259 -12.07072 -12.01033 -11.70178 -11.64401 -11.47055 -11.36393 -11.00291 -10.89148 -10.24536 -9.80907 -9.45926 -8.99321 -7.90113 -5.18977 -0.76932 -0.14596 1.48931 1.49703 1.51293 1.58382 1.71851 2.26797 2.56233 2.59285 2.82878 3.08019 3.31389 3.40085 3.44210 3.62414 3.73054 3.79752 3.85035 3.96551 4.00375 4.07066 4.17364 4.25259 4.30265 4.39013 4.47005 4.51805 4.60293 4.64065 4.67042 4.83409 4.86108 4.89287 4.96473 5.00127 5.03587 5.11388 5.13379 5.16677 5.19022 5.23060 5.32809 5.44624 5.46447 5.56994 5.78572 6.07789 6.27290 6.30288 6.50754 6.86140 7.38133 8.07793 8.34196 9.32803 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005437 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.165075 B = 5148.387550 C = 8183.263277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.581 3.419 7 O -0.560 6.560 8 C 0.042 3.958 9 C 0.080 3.920 10 N -0.428 5.428 11 C 0.089 3.911 12 C 0.245 3.755 13 N -0.453 5.453 14 C 0.049 3.951 15 C -0.127 4.127 16 C -0.124 4.124 17 C 0.044 3.956 18 N -0.457 5.457 19 C 0.096 3.904 20 C 0.170 3.830 21 H 0.061 0.939 22 N -0.715 5.715 23 C -0.230 4.230 24 H 0.073 0.927 25 C -0.060 4.060 26 N -0.965 5.965 27 Si 0.955 3.045 28 H -0.280 1.280 29 H -0.303 1.303 30 H -0.272 1.272 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.191 0.809 37 H 0.211 0.789 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.376 0.624 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -12.935 -6.202 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.323 5.323 6 C 0.367 3.633 7 O -0.439 6.439 8 C -0.098 4.098 9 C -0.078 4.078 10 N -0.141 5.141 11 C -0.078 4.078 12 C 0.007 3.993 13 N -0.172 5.172 14 C -0.078 4.078 15 C -0.166 4.166 16 C -0.162 4.162 17 C -0.081 4.081 18 N -0.179 5.179 19 C -0.030 4.030 20 C 0.058 3.942 21 H 0.079 0.921 22 N -0.353 5.353 23 C -0.362 4.362 24 H 0.091 0.909 25 C -0.253 4.253 26 N -0.615 5.615 27 Si 0.785 3.215 28 H -0.206 1.206 29 H -0.230 1.230 30 H -0.197 1.197 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.208 0.792 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.141 0.859 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.209 0.791 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.662 -13.003 -6.696 16.511 hybrid contribution -0.739 0.633 1.019 1.409 sum 6.923 -12.370 -5.676 15.270 Atomic orbital electron populations 1.21597 0.92381 1.02211 1.02208 1.22454 0.97677 0.99110 0.93369 0.90333 1.22138 0.86956 0.94631 0.96895 1.48401 1.29172 1.42152 1.12603 1.17566 0.81715 0.79078 0.84894 1.90747 1.71351 1.65789 1.16029 1.21857 0.97920 0.99113 0.90939 1.23720 0.90320 0.91644 1.02090 1.68641 1.13949 1.19826 1.11652 1.24128 0.99210 0.95262 0.89173 1.21538 0.90174 0.93287 0.94254 1.62177 1.47410 1.09921 0.97727 1.23139 0.95456 0.94990 0.94237 1.22496 1.02529 0.97017 0.94522 1.22435 1.02672 0.94540 0.96549 1.23139 1.03254 0.88857 0.92857 1.68688 1.14297 1.23286 1.11645 1.23495 0.99716 1.01178 0.78593 1.21566 0.92758 0.93288 0.86541 0.92065 1.42327 1.86320 1.06054 1.00647 1.19441 1.40207 0.92528 0.84029 0.90885 1.25334 1.03489 0.95660 1.00808 1.69791 1.58348 1.03879 1.29489 0.85419 0.77990 0.77222 0.80888 1.20628 1.22984 1.19703 0.92225 0.93229 0.90643 0.90133 0.90708 0.79222 0.77213 0.91598 0.92062 0.91895 0.90151 0.91013 0.88043 0.92980 0.85923 0.88867 0.93536 0.79129 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.13 71.98 0.66 -2.73 16 2 C -0.11 -3.25 3.20 -9.61 -0.03 -3.28 16 3 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.12 3.35 6.46 86.73 0.56 3.91 16 5 N -0.59 -19.41 3.33 -814.87 -2.71 -22.12 16 6 C 0.58 19.25 7.84 86.87 0.68 19.93 16 7 O -0.56 -19.97 16.66 -3.75 -0.06 -20.03 16 8 C 0.04 1.26 6.71 41.82 0.28 1.55 16 9 C 0.08 2.07 10.76 84.88 0.91 2.98 16 10 N -0.43 -10.00 10.48 -193.60 -2.03 -12.03 16 11 C 0.09 1.83 10.70 85.02 0.91 2.74 16 12 C 0.25 6.21 6.01 133.22 0.80 7.01 16 13 N -0.45 -10.73 5.30 -688.87 -3.65 -14.38 16 14 C 0.05 1.44 6.00 86.65 0.52 1.96 16 15 C -0.13 -3.34 7.06 31.80 0.22 -3.11 16 16 C -0.12 -2.32 6.93 31.47 0.22 -2.11 16 17 C 0.04 0.76 6.28 86.45 0.54 1.30 16 18 N -0.46 -13.75 5.32 -181.79 -0.97 -14.72 16 19 C 0.10 3.40 5.60 86.86 0.49 3.88 16 20 C 0.17 6.27 3.16 46.38 0.15 6.42 16 21 H 0.06 2.33 7.99 -2.39 -0.02 2.31 16 22 N -0.72 -32.79 5.24 -316.36 -1.66 -34.45 16 23 C -0.23 -11.60 9.96 84.03 0.84 -10.76 16 24 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 25 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 26 N -0.96 -55.45 13.06 21.65 0.28 -55.16 16 27 Si 0.96 42.81 29.55 68.60 2.03 44.83 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 30 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.16 7.82 -2.39 -0.02 2.15 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.19 4.37 7.64 -2.91 -0.02 4.35 16 37 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.10 5.15 -2.39 -0.01 2.09 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 3.41 3.83 -2.38 -0.01 3.40 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.38 18.83 7.76 -92.71 -0.72 18.11 16 49 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -62.38 391.25 -0.30 -62.68 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.25 Total: 38.41 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 8.22 Total: 26.97 kcal Atomic # 7 Polarization: -142.13 SS G_CDS: -10.73 Total: -152.86 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.03 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.38 -0.30 -62.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939260834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.453 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds