Wall clock time and date at job start Wed Apr 1 2020 03:58:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 110.91940 * 2 1
4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3
5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1
6 6 C 1.34782 * 125.64189 * 204.10422 * 5 4 2
7 7 O 1.21556 * 120.00058 * 359.97438 * 6 5 4
8 8 C 1.47864 * 119.99784 * 180.02562 * 6 5 4
9 9 C 1.40064 * 120.09384 * 179.97438 * 8 6 5
10 10 C 1.38289 * 117.99339 * 179.97438 * 9 8 6
11 11 C 1.39607 * 118.02521 * 0.02562 * 10 9 8
12 12 N 1.38506 * 120.04729 * 179.97438 * 11 10 9
13 13 C 1.48531 * 111.00166 * 62.59575 * 12 11 10
14 14 C 1.54934 * 103.22619 * 159.72083 * 13 12 11
15 15 C 1.54592 * 102.92296 * 322.59016 * 14 13 12
16 16 C 1.47897 * 111.00280 * 179.97438 * 12 11 10
17 17 N 1.32860 * 119.90631 * 359.97438 * 11 10 9
18 18 N 1.28358 * 122.15604 * 359.73500 * 17 11 10
19 19 C 1.47015 * 108.70882 * 24.12597 * 5 4 2
20 20 C 1.54325 * 107.27065 * 358.94051 * 19 5 4
21 21 H 1.08996 * 110.72124 * 219.44887 * 20 19 5
22 22 N 1.46501 * 110.87274 * 96.24166 * 20 19 5
23 23 C 1.36936 * 119.99547 * 91.39334 * 22 20 19
24 24 H 1.07995 * 120.00374 * 359.97438 * 23 22 20
25 25 C 1.38814 * 119.99522 * 179.97438 * 23 22 20
26 26 N 1.31622 * 120.00020 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99940 * 179.97438 * 25 23 22
28 28 H 1.48497 * 109.47313 * 0.02562 * 27 25 23
29 29 H 1.48502 * 109.47177 * 120.00201 * 27 25 23
30 30 H 1.48502 * 109.47260 * 239.99726 * 27 25 23
31 31 H 1.08999 * 109.46952 * 296.09720 * 1 2 3
32 32 H 1.08996 * 109.47229 * 56.09549 * 1 2 3
33 33 H 1.09000 * 109.47156 * 176.09970 * 1 2 3
34 34 H 1.08999 * 110.35942 * 323.74888 * 4 2 1
35 35 H 1.08996 * 110.36556 * 86.07721 * 4 2 1
36 36 H 1.08002 * 121.00769 * 359.95515 * 9 8 6
37 37 H 1.07997 * 120.98942 * 180.02562 * 10 9 8
38 38 H 1.09000 * 110.67277 * 278.15872 * 13 12 11
39 39 H 1.09001 * 110.66786 * 41.29090 * 13 12 11
40 40 H 1.09000 * 110.72779 * 204.22754 * 14 13 12
41 41 H 1.09006 * 110.72312 * 80.94770 * 14 13 12
42 42 H 1.09002 * 110.30921 * 263.03644 * 15 14 13
43 43 H 1.08998 * 110.30554 * 140.87236 * 15 14 13
44 44 H 1.09006 * 109.91714 * 333.50596 * 16 12 11
45 45 H 1.09000 * 109.91496 * 94.79501 * 16 12 11
46 46 H 1.09000 * 109.88350 * 239.52260 * 19 5 4
47 47 H 1.08997 * 110.01690 * 118.42776 * 19 5 4
48 48 H 0.97003 * 119.99871 * 271.38973 * 22 20 19
49 49 H 0.97008 * 119.99637 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0852 -0.8066 -1.2005
5 7 3.4271 -1.2430 -0.7735
6 6 4.4477 -1.5613 -1.5943
7 8 4.3003 -1.4999 -2.7993
8 6 5.7462 -1.9861 -1.0289
9 6 6.8080 -2.3177 -1.8800
10 6 8.0032 -2.7088 -1.3048
11 6 8.0782 -2.7496 0.0887
12 7 9.2548 -3.1358 0.7089
13 6 10.3583 -2.1939 0.3906
14 6 11.3800 -2.4479 1.5273
15 6 10.4757 -2.6850 2.7585
16 6 9.1125 -3.1069 2.1807
17 7 7.0192 -2.4174 0.8190
18 7 5.9107 -2.0489 0.2869
19 6 3.4675 -1.2742 0.6958
20 6 2.0862 -0.8080 1.2021
21 1 2.1923 -0.1700 2.0795
22 7 1.2246 -1.9551 1.4988
23 6 1.2044 -2.4881 2.7600
24 1 1.8238 -2.0631 3.5358
25 6 0.3876 -3.5747 3.0412
26 7 -0.3678 -4.0923 2.0957
27 14 0.3604 -4.3023 4.7614
28 1 1.2923 -3.5441 5.6343
29 1 -1.0153 -4.2159 5.3138
30 1 0.7822 -5.7250 4.7038
31 1 -0.3633 0.4521 0.9229
32 1 -0.3633 0.5732 -0.8529
33 1 -0.3633 -1.0253 -0.0699
34 1 1.4518 -1.6703 -1.4025
35 1 2.1559 -0.1719 -2.0837
36 1 6.6966 -2.2698 -2.9532
37 1 8.8534 -2.9748 -1.9153
38 1 10.7962 -2.4280 -0.5797
39 1 10.0037 -1.1635 0.4153
40 1 12.0150 -1.5748 1.6775
41 1 11.9817 -3.3317 1.3148
42 1 10.3737 -1.7659 3.3356
43 1 10.8854 -3.4801 3.3813
44 1 8.3483 -2.3837 2.4657
45 1 8.8447 -4.0979 2.5473
46 1 4.2427 -0.5998 1.0597
47 1 3.6662 -2.2884 1.0422
48 1 0.6684 -2.3370 0.8018
49 1 -0.9383 -4.8519 2.2922
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000939512583.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:48
Heat of formation + Delta-G solvation = 46.339237 kcal
Electronic energy + Delta-G solvation = -30632.846874 eV
Core-core repulsion = 26595.613743 eV
Total energy + Delta-G solvation = -4037.233130 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.56263 -41.12351 -39.78903 -38.99266 -35.78023 -34.78465 -34.27934 -33.79964
-32.24887 -30.96678 -30.08085 -29.36418 -27.70727 -26.15508 -25.70237 -25.32352
-23.60385 -22.53947 -21.84833 -21.21049 -20.72611 -19.50503 -18.93091 -18.64414
-18.04724 -17.34198 -16.97809 -16.92170 -16.48283 -16.15446 -15.77255 -15.48825
-15.45908 -15.05893 -14.86268 -14.58280 -14.47756 -14.22920 -14.09179 -13.75487
-13.62018 -13.35992 -13.29314 -13.04566 -12.88591 -12.81252 -12.79994 -12.33143
-12.28036 -12.15961 -12.07210 -11.91633 -11.62355 -11.51691 -11.46830 -11.41465
-11.37642 -11.26403 -10.95457 -10.79752 -9.77196 -9.60598 -8.99764 -7.92201
-5.19715 -0.67995 -0.31880 1.43333 1.47493 1.48668 1.58023 1.78962
2.24973 2.48700 2.57484 2.84010 3.20642 3.38934 3.43744 3.53331
3.64122 3.70226 3.82218 3.85913 3.90900 3.95325 4.07833 4.09975
4.25903 4.33812 4.43448 4.47690 4.58488 4.65210 4.66945 4.68234
4.73119 4.83870 4.85237 4.90896 4.94915 5.01902 5.03944 5.05297
5.12620 5.19736 5.24552 5.26766 5.35654 5.54357 5.55567 5.61619
5.72574 6.29574 6.35778 6.82969 7.37034 7.43892 8.10627 8.34395
9.31206
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.009658 B = 0.003275 C = 0.002617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2898.368890 B = 8548.335570 C =10695.184013
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.099 4.099
3 H 0.111 0.889
4 C 0.113 3.887
5 N -0.589 5.589
6 C 0.582 3.418
7 O -0.567 6.567
8 C -0.015 4.015
9 C -0.045 4.045
10 C -0.116 4.116
11 C 0.256 3.744
12 N -0.456 5.456
13 C 0.037 3.963
14 C -0.115 4.115
15 C -0.128 4.128
16 C 0.025 3.975
17 N -0.308 5.308
18 N -0.198 5.198
19 C 0.104 3.896
20 C 0.159 3.841
21 H 0.081 0.919
22 N -0.720 5.720
23 C -0.232 4.232
24 H 0.079 0.921
25 C -0.073 4.073
26 N -0.968 5.968
27 Si 0.966 3.034
28 H -0.265 1.265
29 H -0.293 1.293
30 H -0.301 1.301
31 H 0.056 0.944
32 H 0.074 0.926
33 H 0.037 0.963
34 H 0.053 0.947
35 H 0.089 0.911
36 H 0.181 0.819
37 H 0.199 0.801
38 H 0.118 0.882
39 H 0.054 0.946
40 H 0.099 0.901
41 H 0.089 0.911
42 H 0.076 0.924
43 H 0.087 0.913
44 H 0.064 0.936
45 H 0.076 0.924
46 H 0.076 0.924
47 H 0.050 0.950
48 H 0.375 0.625
49 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.600 8.393 -5.858 26.644
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.119 4.119
3 H 0.129 0.871
4 C -0.009 4.009
5 N -0.319 5.319
6 C 0.368 3.632
7 O -0.447 6.447
8 C -0.165 4.165
9 C -0.073 4.073
10 C -0.147 4.147
11 C 0.018 3.982
12 N -0.175 5.175
13 C -0.087 4.087
14 C -0.153 4.153
15 C -0.167 4.167
16 C -0.102 4.102
17 N -0.157 5.157
18 N -0.044 5.044
19 C -0.021 4.021
20 C 0.048 3.952
21 H 0.099 0.901
22 N -0.359 5.359
23 C -0.364 4.364
24 H 0.096 0.904
25 C -0.266 4.266
26 N -0.619 5.619
27 Si 0.796 3.204
28 H -0.189 1.189
29 H -0.221 1.221
30 H -0.229 1.229
31 H 0.076 0.924
32 H 0.093 0.907
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.108 0.892
36 H 0.199 0.801
37 H 0.216 0.784
38 H 0.136 0.864
39 H 0.072 0.928
40 H 0.117 0.883
41 H 0.108 0.892
42 H 0.095 0.905
43 H 0.105 0.895
44 H 0.082 0.918
45 H 0.095 0.905
46 H 0.094 0.906
47 H 0.068 0.932
48 H 0.209 0.791
49 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 24.115 8.058 -4.975 25.908
hybrid contribution -0.474 -0.838 -0.311 1.012
sum 23.641 7.220 -5.286 25.278
Atomic orbital electron populations
1.21450 0.93067 1.01447 1.02051 1.22625 0.97025 0.99258 0.92996
0.87122 1.22401 0.81639 0.98224 0.98639 1.48393 1.11917 1.63114
1.08456 1.17418 0.82734 0.77789 0.85214 1.90736 1.83304 1.56412
1.14200 1.22618 0.96620 1.04443 0.92806 1.22494 0.90302 0.91350
1.03196 1.22290 1.00040 0.99187 0.93169 1.22091 0.93375 0.89691
0.93088 1.61794 1.01832 1.44103 1.09765 1.23602 0.89420 0.93093
1.02570 1.22547 0.96641 1.03961 0.92176 1.22444 0.92956 1.02675
0.98589 1.23005 0.99659 1.02864 0.84669 1.73331 0.97109 1.13246
1.32015 1.73359 1.14043 1.06421 1.10578 1.23005 1.00084 1.01429
0.77600 1.21556 0.88235 0.88905 0.96471 0.90103 1.42548 1.49192
1.34517 1.09663 1.19664 1.18598 1.09250 0.88874 0.90358 1.25458
1.00167 0.99991 1.00944 1.69822 1.31516 1.27071 1.33524 0.85174
0.77092 0.77586 0.80555 1.18915 1.22065 1.22866 0.92445 0.90723
0.94340 0.92906 0.89243 0.80122 0.78372 0.86403 0.92774 0.88275
0.89250 0.90518 0.89467 0.91808 0.90545 0.90560 0.93205 0.79117
0.94273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.82 8.84 71.98 0.64 -3.18 16
2 C -0.10 -3.07 3.51 -9.40 -0.03 -3.11 16
3 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16
4 C 0.11 3.78 6.34 86.86 0.55 4.33 16
5 N -0.59 -21.45 3.33 -815.16 -2.71 -24.16 16
6 C 0.58 21.07 7.84 86.79 0.68 21.75 16
7 O -0.57 -21.81 16.64 -3.89 -0.06 -21.87 16
8 C -0.02 -0.50 6.80 42.00 0.29 -0.21 16
9 C -0.04 -1.05 9.71 22.72 0.22 -0.83 16
10 C -0.12 -2.17 9.57 22.61 0.22 -1.95 16
11 C 0.26 6.05 6.27 133.21 0.84 6.88 16
12 N -0.46 -8.50 5.29 -689.05 -3.65 -12.14 16
13 C 0.04 0.42 6.06 86.65 0.53 0.94 16
14 C -0.12 -0.93 7.06 31.80 0.22 -0.71 16
15 C -0.13 -1.54 6.93 31.46 0.22 -1.32 16
16 C 0.02 0.49 6.35 86.43 0.55 1.04 16
17 N -0.31 -9.64 9.32 -55.16 -0.51 -10.15 16
18 N -0.20 -6.85 8.06 -48.50 -0.39 -7.24 16
19 C 0.10 3.97 5.15 86.73 0.45 4.41 16
20 C 0.16 6.10 3.38 46.18 0.16 6.25 16
21 H 0.08 2.99 8.09 -2.39 -0.02 2.97 16
22 N -0.72 -35.23 4.51 -317.33 -1.43 -36.67 16
23 C -0.23 -12.66 9.96 84.03 0.84 -11.82 16
24 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16
25 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16
26 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16
27 Si 0.97 46.71 29.55 68.60 2.03 48.74 16
28 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16
29 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16
30 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16
31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
33 H 0.04 1.45 6.48 -2.39 -0.02 1.43 16
34 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16
35 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16
36 H 0.18 3.48 7.71 -2.91 -0.02 3.45 16
37 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16
38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16
39 H 0.05 0.67 7.99 -2.39 -0.02 0.66 16
40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
41 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16
42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
44 H 0.06 1.56 6.51 -2.38 -0.02 1.54 16
45 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
46 H 0.08 2.70 7.42 -2.39 -0.02 2.68 16
47 H 0.05 2.27 7.46 -2.39 -0.02 2.25 16
48 H 0.38 19.95 6.31 -92.71 -0.58 19.37 16
49 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16
Total: -1.00 -72.98 391.80 0.75 -72.23
By element:
Atomic # 1 Polarization: 31.34 SS G_CDS: 0.38 Total: 31.72 kcal
Atomic # 6 Polarization: 11.92 SS G_CDS: 6.82 Total: 18.73 kcal
Atomic # 7 Polarization: -141.14 SS G_CDS: -8.41 Total: -149.55 kcal
Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal
Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal
Total: -72.98 0.75 -72.23 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000939512583.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.572 kcal
(2) G-P(sol) polarization free energy of solvation -72.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds