Wall clock time and date at job start Wed Apr 1 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34772 * 125.64908 * 204.09618 * 5 4 2 7 7 O 1.21562 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.40066 * 120.10167 * 179.72431 * 8 6 5 10 10 C 1.38287 * 117.99755 * 179.73625 * 9 8 6 11 11 C 1.39603 * 118.02202 * 0.52179 * 10 9 8 12 12 N 1.38508 * 120.04566 * 179.74623 * 11 10 9 13 13 C 1.48538 * 110.99437 * 62.58832 * 12 11 10 14 14 C 1.54942 * 103.22691 * 159.72109 * 13 12 11 15 15 C 1.54605 * 102.91875 * 322.58646 * 14 13 12 16 16 C 1.47903 * 110.99925 * 179.97438 * 12 11 10 17 17 N 1.32852 * 119.90911 * 359.73306 * 11 10 9 18 18 N 1.28357 * 122.15843 * 359.97438 * 17 11 10 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08002 * 121.00264 * 359.97211 * 9 8 6 37 37 H 1.07996 * 120.98717 * 180.25648 * 10 9 8 38 38 H 1.08998 * 110.66791 * 278.14647 * 13 12 11 39 39 H 1.08998 * 110.67113 * 41.28514 * 13 12 11 40 40 H 1.08994 * 110.72459 * 204.22637 * 14 13 12 41 41 H 1.08999 * 110.72371 * 80.93828 * 14 13 12 42 42 H 1.09004 * 110.30264 * 263.04194 * 15 14 13 43 43 H 1.08998 * 110.30887 * 140.87918 * 15 14 13 44 44 H 1.08994 * 109.91708 * 333.51230 * 16 12 11 45 45 H 1.08997 * 109.91299 * 94.80726 * 16 12 11 46 46 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 47 47 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 48 48 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 49 49 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4477 -1.5615 -1.5938 7 8 4.3007 -1.4995 -2.7989 8 6 5.7462 -1.9862 -1.0284 9 6 6.8064 -2.3232 -1.8794 10 6 8.0032 -2.7092 -1.3040 11 6 8.0780 -2.7500 0.0894 12 7 9.2548 -3.1358 0.7097 13 6 10.3579 -2.1933 0.3914 14 6 11.3798 -2.4468 1.5282 15 6 10.4753 -2.6841 2.7595 16 6 9.1121 -3.1070 2.1816 17 7 7.0189 -2.4181 0.8196 18 7 5.9090 -2.0541 0.2874 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.6939 -2.2792 -2.9526 37 1 8.8534 -2.9753 -1.9146 38 1 10.7960 -2.4275 -0.5788 39 1 10.0028 -1.1631 0.4159 40 1 12.0143 -1.5733 1.6782 41 1 11.9817 -3.3303 1.3158 42 1 10.3729 -1.7648 3.3363 43 1 10.8854 -3.4789 3.3825 44 1 8.3476 -2.3843 2.4665 45 1 8.8450 -4.0981 2.5481 46 1 4.2426 -0.5996 1.0601 47 1 3.6662 -2.2882 1.0425 48 1 2.2699 1.0133 2.2783 49 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939512584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:53 Heat of formation + Delta-G solvation = 69.070041 kcal Electronic energy + Delta-G solvation = -30636.545312 eV Core-core repulsion = 26600.297863 eV Total energy + Delta-G solvation = -4036.247449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54212 -39.92063 -38.84871 -37.63434 -34.26800 -33.81007 -33.26474 -32.49320 -31.00567 -30.05966 -29.36575 -27.86506 -26.60580 -25.07168 -24.42796 -23.65188 -21.94551 -21.38363 -21.10455 -20.15517 -19.97092 -17.95621 -17.78777 -17.46892 -17.03099 -16.31580 -15.99851 -15.69486 -15.26976 -14.73589 -14.57800 -14.36176 -14.09309 -13.89629 -13.47971 -13.40241 -13.29615 -13.16620 -12.95077 -12.60594 -12.58141 -12.47499 -12.35981 -11.84017 -11.69689 -11.62204 -11.44526 -11.39893 -11.04286 -10.89596 -10.73500 -10.67426 -10.59754 -10.40307 -10.31421 -10.06503 -9.94987 -9.75570 -9.58935 -8.95482 -8.74869 -8.38969 -7.32657 -5.77898 -3.14907 0.35737 0.64422 2.58784 2.94334 3.18318 3.36352 3.39452 3.44782 3.58480 3.87973 4.12894 4.24123 4.41477 4.45670 4.55369 4.57796 4.72928 4.74478 4.87815 4.96517 5.05158 5.07990 5.12375 5.22725 5.31168 5.44852 5.46756 5.51109 5.55677 5.57433 5.61897 5.69278 5.72805 5.77489 5.82530 5.86977 5.90922 5.94826 6.14160 6.17971 6.27107 6.37046 6.48600 6.52320 6.59809 6.62764 6.87530 7.62337 7.96807 8.09552 8.40714 8.52015 9.17438 9.89601 10.07768 11.40046 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.003730 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.318964 B = 7504.856552 C =10203.987281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.587 3.413 7 O -0.548 6.548 8 C 0.002 3.998 9 C -0.047 4.047 10 C -0.137 4.137 11 C 0.258 3.742 12 N -0.456 5.456 13 C 0.041 3.959 14 C -0.123 4.123 15 C -0.133 4.133 16 C 0.029 3.971 17 N -0.273 5.273 18 N -0.166 5.166 19 C 0.085 3.915 20 C 0.179 3.821 21 H 0.074 0.926 22 N -0.735 5.735 23 C -0.246 4.246 24 H 0.093 0.907 25 C 0.010 3.990 26 N -0.930 5.930 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.363 0.637 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -4.025 -15.119 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.373 3.627 7 O -0.426 6.426 8 C -0.147 4.147 9 C -0.076 4.076 10 C -0.167 4.167 11 C 0.020 3.980 12 N -0.175 5.175 13 C -0.084 4.084 14 C -0.161 4.161 15 C -0.171 4.171 16 C -0.098 4.098 17 N -0.122 5.122 18 N -0.012 5.012 19 C -0.040 4.040 20 C 0.067 3.933 21 H 0.092 0.908 22 N -0.376 5.376 23 C -0.375 4.375 24 H 0.111 0.889 25 C -0.186 4.186 26 N -0.577 5.577 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.203 1.203 30 H -0.217 1.217 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.173 0.827 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.196 0.804 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.384 -4.502 -14.210 20.033 hybrid contribution 0.680 1.669 -1.072 2.097 sum 14.064 -2.833 -15.282 20.961 Atomic orbital electron populations 1.21622 0.93576 1.01933 1.02070 1.22675 0.96564 0.99656 0.94870 0.89994 1.22346 0.82297 0.98421 0.97817 1.48398 1.11484 1.63282 1.09027 1.17097 0.82056 0.78231 0.85324 1.90769 1.82682 1.55554 1.13637 1.22681 0.96552 1.03037 0.92427 1.22255 0.90780 0.91986 1.02570 1.21883 0.99504 1.01523 0.93835 1.21763 0.93542 0.90623 0.92028 1.61708 1.02042 1.43663 1.10050 1.23388 0.90360 0.94058 1.00622 1.22516 0.97104 1.02599 0.93849 1.22461 0.94447 1.02395 0.97806 1.23029 0.98469 1.04210 0.84053 1.73485 0.96434 1.11383 1.30893 1.73539 1.13239 1.04746 1.09694 1.23398 1.01776 1.02884 0.75939 1.21311 0.92326 0.93679 0.85947 0.90786 1.42681 1.88662 1.03950 1.02335 1.19068 1.42828 0.94021 0.81618 0.88934 1.24639 1.01700 0.97147 0.95130 1.69702 1.56648 1.34119 0.97270 0.86612 0.77837 0.87508 0.76933 1.21151 1.20262 1.21729 0.91386 0.93062 0.92450 0.90592 0.90986 0.82029 0.82691 0.88946 0.92314 0.90227 0.90237 0.90726 0.90408 0.89281 0.89313 0.89891 0.90921 0.80351 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.31 37.16 0.35 -1.42 16 2 C -0.12 -1.77 3.25 -88.48 -0.29 -2.06 16 3 H 0.08 1.26 8.00 -51.92 -0.42 0.85 16 4 C 0.11 1.63 6.37 -2.53 -0.02 1.61 16 5 N -0.59 -9.74 3.33 -171.62 -0.57 -10.31 16 6 C 0.59 9.80 7.83 -12.33 -0.10 9.70 16 7 O -0.55 -9.77 16.64 5.31 0.09 -9.68 16 8 C 0.00 0.02 6.80 -82.84 -0.56 -0.54 16 9 C -0.05 -0.56 9.71 -38.88 -0.38 -0.94 16 10 C -0.14 -1.42 9.57 -39.05 -0.37 -1.80 16 11 C 0.26 3.28 6.27 -154.94 -0.97 2.30 16 12 N -0.46 -4.87 5.29 -169.12 -0.89 -5.77 16 13 C 0.04 0.32 6.06 -1.89 -0.01 0.31 16 14 C -0.12 -0.81 7.06 -24.86 -0.18 -0.98 16 15 C -0.13 -1.08 6.93 -25.37 -0.18 -1.26 16 16 C 0.03 0.32 6.35 -2.76 -0.02 0.30 16 17 N -0.27 -4.38 9.32 31.21 0.29 -4.09 16 18 N -0.17 -2.83 8.06 33.32 0.27 -2.56 16 19 C 0.09 1.55 5.15 -3.06 -0.02 1.54 16 20 C 0.18 3.31 3.06 -66.09 -0.20 3.11 16 21 H 0.07 1.40 8.02 -51.93 -0.42 0.98 16 22 N -0.73 -16.66 4.98 -51.65 -0.26 -16.91 16 23 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 24 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 25 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 26 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 27 Si 0.88 21.73 27.74 -169.99 -4.71 17.01 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 30 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.08 1.04 8.04 -51.93 -0.42 0.63 16 35 H 0.07 0.95 7.99 -51.93 -0.41 0.53 16 36 H 0.16 1.61 7.71 -52.49 -0.40 1.20 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.51 7.99 -51.93 -0.42 0.09 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.21 6.50 -51.93 -0.34 0.87 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.69 7.31 -51.93 -0.38 1.31 16 47 H 0.07 1.39 7.54 -51.93 -0.39 1.00 16 48 H 0.36 8.16 5.57 -40.82 -0.23 7.93 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -33.06 392.07 -9.93 -42.99 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.64 Total: 8.14 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.19 Total: 3.23 kcal Atomic # 7 Polarization: -67.21 SS G_CDS: -0.39 Total: -67.60 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.06 -9.93 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939512584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.064 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds