Wall clock time and date at job start Wed Apr 1 2020 03:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34772 * 125.64908 * 204.09618 * 5 4 2 7 7 O 1.21562 * 120.00059 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.00424 * 180.02562 * 6 5 4 9 9 C 1.40066 * 120.10167 * 179.72431 * 8 6 5 10 10 C 1.38287 * 117.99755 * 179.73625 * 9 8 6 11 11 C 1.39603 * 118.02202 * 0.52179 * 10 9 8 12 12 N 1.38508 * 120.04566 * 179.74623 * 11 10 9 13 13 C 1.48538 * 110.99437 * 62.58832 * 12 11 10 14 14 C 1.54942 * 103.22691 * 159.72109 * 13 12 11 15 15 C 1.54605 * 102.91875 * 322.58646 * 14 13 12 16 16 C 1.47903 * 110.99925 * 179.97438 * 12 11 10 17 17 N 1.32852 * 119.90911 * 359.73306 * 11 10 9 18 18 N 1.28357 * 122.15843 * 359.97438 * 17 11 10 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08002 * 121.00264 * 359.97211 * 9 8 6 37 37 H 1.07996 * 120.98717 * 180.25648 * 10 9 8 38 38 H 1.08998 * 110.66791 * 278.14647 * 13 12 11 39 39 H 1.08998 * 110.67113 * 41.28514 * 13 12 11 40 40 H 1.08994 * 110.72459 * 204.22637 * 14 13 12 41 41 H 1.08999 * 110.72371 * 80.93828 * 14 13 12 42 42 H 1.09004 * 110.30264 * 263.04194 * 15 14 13 43 43 H 1.08998 * 110.30887 * 140.87918 * 15 14 13 44 44 H 1.08994 * 109.91708 * 333.51230 * 16 12 11 45 45 H 1.08997 * 109.91299 * 94.80726 * 16 12 11 46 46 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 47 47 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 48 48 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 49 49 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4477 -1.5615 -1.5938 7 8 4.3007 -1.4995 -2.7989 8 6 5.7462 -1.9862 -1.0284 9 6 6.8064 -2.3232 -1.8794 10 6 8.0032 -2.7092 -1.3040 11 6 8.0780 -2.7500 0.0894 12 7 9.2548 -3.1358 0.7097 13 6 10.3579 -2.1933 0.3914 14 6 11.3798 -2.4468 1.5282 15 6 10.4753 -2.6841 2.7595 16 6 9.1121 -3.1070 2.1816 17 7 7.0189 -2.4181 0.8196 18 7 5.9090 -2.0541 0.2874 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.6939 -2.2792 -2.9526 37 1 8.8534 -2.9753 -1.9146 38 1 10.7960 -2.4275 -0.5788 39 1 10.0028 -1.1631 0.4159 40 1 12.0143 -1.5733 1.6782 41 1 11.9817 -3.3303 1.3158 42 1 10.3729 -1.7648 3.3363 43 1 10.8854 -3.4789 3.3825 44 1 8.3476 -2.3843 2.4665 45 1 8.8450 -4.0981 2.5481 46 1 4.2426 -0.5996 1.0601 47 1 3.6662 -2.2882 1.0425 48 1 2.2699 1.0133 2.2783 49 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939512584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:52 Heat of formation + Delta-G solvation = 46.579261 kcal Electronic energy + Delta-G solvation = -30637.520585 eV Core-core repulsion = 26600.297863 eV Total energy + Delta-G solvation = -4037.222722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57835 -41.14364 -39.79621 -39.00006 -36.01862 -34.82873 -34.29016 -33.88160 -32.87484 -30.99439 -30.10317 -29.49968 -27.73117 -26.19590 -25.61080 -25.24822 -23.08866 -22.50973 -21.86564 -21.63908 -21.20667 -19.53811 -19.04454 -18.65644 -18.17764 -17.41355 -17.13042 -16.90630 -16.59411 -16.16214 -15.76190 -15.52828 -15.28106 -14.97486 -14.90135 -14.67381 -14.58416 -14.28971 -14.21617 -13.88240 -13.68868 -13.66740 -13.30437 -13.24780 -12.96072 -12.90510 -12.81256 -12.32740 -12.21035 -12.17527 -12.06600 -11.92455 -11.80321 -11.64789 -11.54189 -11.46110 -11.39521 -11.28829 -10.96483 -10.77904 -9.81279 -9.64166 -9.35289 -8.00394 -5.35175 -0.68940 -0.31779 1.37581 1.40857 1.41320 1.47653 1.72605 2.23154 2.48633 2.49073 2.80727 3.16113 3.29454 3.37305 3.50351 3.60738 3.62771 3.66699 3.80086 3.84026 3.88254 4.05767 4.10628 4.23200 4.31305 4.34144 4.42379 4.45307 4.58471 4.62754 4.64747 4.67285 4.81949 4.83708 4.88754 4.92801 4.98786 5.02639 5.07902 5.10436 5.14250 5.17760 5.21710 5.30939 5.48609 5.51400 5.70591 5.78626 6.22191 6.27728 6.79795 7.07728 7.44783 7.81201 8.00675 9.20952 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.003730 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.318964 B = 7504.856552 C =10203.987281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.587 3.413 7 O -0.559 6.559 8 C -0.019 4.019 9 C -0.042 4.042 10 C -0.115 4.115 11 C 0.254 3.746 12 N -0.453 5.453 13 C 0.037 3.963 14 C -0.114 4.114 15 C -0.131 4.131 16 C 0.025 3.975 17 N -0.313 5.313 18 N -0.203 5.203 19 C 0.107 3.893 20 C 0.171 3.829 21 H 0.068 0.932 22 N -0.735 5.735 23 C -0.228 4.228 24 H 0.058 0.942 25 C -0.057 4.057 26 N -0.982 5.982 27 Si 0.949 3.051 28 H -0.286 1.286 29 H -0.246 1.246 30 H -0.295 1.295 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.186 0.814 37 H 0.201 0.799 38 H 0.123 0.877 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.367 0.633 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 -3.178 -18.409 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.325 5.325 6 C 0.374 3.626 7 O -0.438 6.438 8 C -0.169 4.169 9 C -0.071 4.071 10 C -0.146 4.146 11 C 0.015 3.985 12 N -0.171 5.171 13 C -0.087 4.087 14 C -0.152 4.152 15 C -0.169 4.169 16 C -0.102 4.102 17 N -0.162 5.162 18 N -0.048 5.048 19 C -0.019 4.019 20 C 0.061 3.939 21 H 0.086 0.914 22 N -0.377 5.377 23 C -0.358 4.358 24 H 0.076 0.924 25 C -0.249 4.249 26 N -0.632 5.632 27 Si 0.776 3.224 28 H -0.213 1.213 29 H -0.171 1.171 30 H -0.222 1.222 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.204 0.796 37 H 0.218 0.782 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.201 0.799 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.878 -3.658 -17.562 23.306 hybrid contribution 0.313 1.243 -0.093 1.286 sum 15.191 -2.414 -17.656 23.416 Atomic orbital electron populations 1.21607 0.91705 1.02947 1.02498 1.22602 0.97985 0.99026 0.92786 0.89906 1.22492 0.81312 0.99153 0.97725 1.48404 1.12549 1.63580 1.07982 1.17296 0.82408 0.77725 0.85169 1.90748 1.83030 1.56190 1.13812 1.22746 0.97100 1.04352 0.92677 1.22522 0.90143 0.91170 1.03269 1.22312 1.00184 0.99190 0.92886 1.22145 0.93349 0.89692 0.93267 1.61827 1.01883 1.43945 1.09457 1.23610 0.89490 0.92932 1.02706 1.22546 0.96596 1.04041 0.92003 1.22459 0.93160 1.02514 0.98764 1.22984 0.99436 1.02829 0.84940 1.73398 0.97279 1.13258 1.32216 1.73429 1.14342 1.06229 1.10841 1.22870 1.00516 1.01108 0.77375 1.21490 0.92592 0.93816 0.86035 0.91353 1.42592 1.88725 1.04502 1.01922 1.18986 1.40627 0.92621 0.83615 0.92381 1.25413 1.02497 1.02274 0.94707 1.69884 1.59114 1.35937 0.98248 0.85506 0.77924 0.81236 0.77710 1.21261 1.17075 1.22214 0.92975 0.90196 0.91597 0.89164 0.89411 0.79648 0.78201 0.85911 0.93299 0.88497 0.88772 0.91217 0.89209 0.92551 0.90163 0.92240 0.92777 0.79885 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.31 71.98 0.67 -2.42 16 2 C -0.10 -2.96 3.25 -9.40 -0.03 -2.99 16 3 H 0.08 2.38 8.00 -2.38 -0.02 2.36 16 4 C 0.11 3.07 6.37 86.85 0.55 3.63 16 5 N -0.59 -19.44 3.33 -815.17 -2.71 -22.15 16 6 C 0.59 19.33 7.83 86.79 0.68 20.01 16 7 O -0.56 -19.06 16.64 -3.91 -0.07 -19.13 16 8 C -0.02 -0.59 6.80 42.00 0.29 -0.30 16 9 C -0.04 -0.94 9.71 22.73 0.22 -0.72 16 10 C -0.12 -2.11 9.57 22.61 0.22 -1.90 16 11 C 0.25 6.31 6.27 133.21 0.84 7.14 16 12 N -0.45 -9.18 5.29 -688.98 -3.65 -12.82 16 13 C 0.04 0.49 6.06 86.65 0.53 1.01 16 14 C -0.11 -1.20 7.06 31.80 0.22 -0.97 16 15 C -0.13 -2.04 6.93 31.47 0.22 -1.82 16 16 C 0.03 0.57 6.35 86.44 0.55 1.12 16 17 N -0.31 -10.53 9.32 -55.17 -0.51 -11.05 16 18 N -0.20 -7.25 8.06 -48.50 -0.39 -7.65 16 19 C 0.11 4.05 5.15 86.73 0.45 4.50 16 20 C 0.17 6.39 3.06 46.18 0.14 6.53 16 21 H 0.07 2.64 8.02 -2.39 -0.02 2.63 16 22 N -0.74 -33.72 4.98 -317.31 -1.58 -35.30 16 23 C -0.23 -12.87 10.46 84.03 0.88 -11.99 16 24 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 25 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 26 N -0.98 -63.15 13.97 21.65 0.30 -62.85 16 27 Si 0.95 45.50 27.74 68.60 1.90 47.40 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 30 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.09 2.22 8.04 -2.38 -0.02 2.21 16 35 H 0.09 2.10 7.99 -2.38 -0.02 2.08 16 36 H 0.19 3.14 7.71 -2.91 -0.02 3.11 16 37 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.76 7.99 -2.39 -0.02 0.74 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.67 6.50 -2.39 -0.02 1.65 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 2.54 7.31 -2.39 -0.02 2.52 16 47 H 0.05 2.22 7.54 -2.39 -0.02 2.20 16 48 H 0.37 16.20 5.57 -92.71 -0.52 15.69 16 49 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -76.25 392.07 0.56 -75.69 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.38 Total: 29.94 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.88 Total: 17.92 kcal Atomic # 7 Polarization: -143.27 SS G_CDS: -8.54 Total: -151.81 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.07 Total: -19.13 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Total: -76.25 0.56 -75.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939512584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.266 kcal (2) G-P(sol) polarization free energy of solvation -76.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds