Wall clock time and date at job start Wed Apr 1 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00560 * 2 1 3 5 5 O 1.21282 * 119.99914 * 106.93984 * 4 2 1 6 6 N 1.34774 * 119.99844 * 286.93569 * 4 2 1 7 7 C 1.47082 * 120.88236 * 354.54845 * 6 4 2 8 8 C 1.53228 * 108.52515 * 231.20275 * 7 6 4 9 9 N 1.46902 * 109.34070 * 306.17646 * 8 7 6 10 10 C 1.46898 * 110.99687 * 187.25252 * 9 8 7 11 11 C 1.53947 * 113.74336 * 273.73618 * 10 9 8 12 12 N 1.47816 * 86.03889 * 222.09094 * 11 10 9 13 13 C 1.36938 * 134.45138 * 204.64697 * 12 11 10 14 14 H 1.08002 * 119.99473 * 179.85806 * 13 12 11 15 15 C 1.38809 * 120.00339 * 359.86097 * 13 12 11 16 16 N 1.31621 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99942 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46903 * 59.99835 * 17 15 13 19 19 H 1.48494 * 109.46945 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46974 * 300.00169 * 17 15 13 21 21 C 1.47584 * 91.05087 * 24.54521 * 12 11 10 22 22 C 1.46897 * 111.27267 * 63.09881 * 9 8 7 23 23 C 1.47079 * 120.88286 * 174.57048 * 6 4 2 24 24 C 1.50702 * 109.46777 * 240.00334 * 2 1 3 25 25 C 1.38600 * 120.80430 * 299.71882 * 24 2 1 26 26 N 1.32334 * 119.10765 * 179.71994 * 25 24 2 27 27 C 1.31798 * 120.81149 * 0.56743 * 26 25 24 28 28 N 1.31788 * 121.75816 * 359.71136 * 27 26 25 29 29 C 1.32328 * 120.81875 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46982 * 185.17270 * 1 2 3 31 31 H 1.09001 * 109.46741 * 305.17076 * 1 2 3 32 32 H 1.08994 * 109.47025 * 65.16827 * 1 2 3 33 33 H 1.09007 * 109.62593 * 111.49009 * 7 6 4 34 34 H 1.08995 * 109.62790 * 350.91911 * 7 6 4 35 35 H 1.09000 * 109.49687 * 186.20974 * 8 7 6 36 36 H 1.09006 * 109.49157 * 66.13138 * 8 7 6 37 37 H 1.09002 * 112.95126 * 45.32905 * 10 9 8 38 38 H 1.09005 * 113.76331 * 336.34961 * 11 10 9 39 39 H 1.08996 * 113.77404 * 107.74699 * 11 10 9 40 40 H 0.96996 * 120.00069 * 180.02562 * 16 15 13 41 41 H 1.09000 * 113.76839 * 221.15537 * 21 12 11 42 42 H 1.09002 * 113.86691 * 89.77478 * 21 12 11 43 43 H 1.09007 * 109.48709 * 56.85864 * 22 9 8 44 44 H 1.08996 * 109.48981 * 176.93473 * 22 9 8 45 45 H 1.09000 * 109.63341 * 248.50756 * 23 6 4 46 46 H 1.09005 * 109.62699 * 9.08999 * 23 6 4 47 47 H 1.08001 * 120.44443 * 0.02562 * 25 24 2 48 48 H 1.08004 * 119.11294 * 179.72852 * 27 26 25 49 49 H 1.08003 * 120.44394 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5230 -1.8155 1.1347 6 7 1.9364 -0.1180 2.4371 7 6 1.4555 1.2664 2.5622 8 6 2.4613 2.0567 3.4058 9 7 2.6832 1.3586 4.6791 10 6 3.5069 2.1683 5.5868 11 6 5.0213 1.9845 5.3795 12 7 5.1182 1.9752 6.8545 13 6 6.1102 2.2672 7.7522 14 1 5.9218 2.1807 8.8121 15 6 7.3578 2.6744 7.2999 16 7 7.5875 2.7794 6.0082 17 14 8.7112 3.0720 8.5246 18 1 9.0024 1.8708 9.3477 19 1 9.9369 3.4801 7.7925 20 1 8.2697 4.1817 9.4072 21 6 3.7167 1.5278 6.9709 22 6 3.2825 0.0349 4.4639 23 6 2.3103 -0.8383 3.6637 24 6 2.0323 -0.7104 -1.2305 25 6 1.7124 -2.0387 -1.4636 26 7 2.1669 -2.6279 -2.5579 27 6 2.9234 -1.9706 -3.4139 28 7 3.2524 -0.7089 -3.2224 29 6 2.8297 -0.0527 -2.1538 30 1 -0.3633 -1.0234 0.0926 31 1 -0.3633 0.5920 0.8401 32 1 -0.3633 0.4316 -0.9326 33 1 0.4818 1.2728 3.0521 34 1 1.3737 1.7164 1.5729 35 1 2.0677 3.0541 3.6015 36 1 3.4049 2.1372 2.8660 37 1 3.1933 3.2113 5.6289 38 1 5.2891 1.0351 4.9158 39 1 5.5078 2.8402 4.9114 40 1 8.4594 3.0636 5.6922 41 1 3.1635 2.0196 7.7710 42 1 3.5987 0.4442 6.9760 43 1 4.2147 0.1436 3.9093 44 1 3.4843 -0.4339 5.4269 45 1 1.4188 -1.0342 4.2595 46 1 2.7937 -1.7797 3.4025 47 1 1.0963 -2.5841 -0.7640 48 1 3.2830 -2.4797 -4.2960 49 1 3.1027 0.9813 -2.0031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941534337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:35 Heat of formation + Delta-G solvation = 95.984316 kcal Electronic energy + Delta-G solvation = -30598.731459 eV Core-core repulsion = 26563.651101 eV Total energy + Delta-G solvation = -4035.080358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51923 -40.36793 -39.00186 -36.76018 -35.21343 -33.93690 -33.79902 -31.90033 -31.37373 -30.30271 -28.14541 -26.44312 -25.58959 -24.89687 -24.77038 -24.15244 -23.16455 -22.46660 -21.07681 -19.38035 -18.54735 -18.02457 -17.85942 -17.00210 -16.77778 -16.39757 -15.68695 -15.44156 -15.09593 -14.94938 -14.78223 -14.75417 -14.27871 -14.04401 -13.90430 -13.83461 -13.76733 -13.49392 -12.83139 -12.66534 -12.53895 -12.28936 -12.10920 -11.97561 -11.80596 -11.62783 -11.32400 -11.08501 -11.03267 -10.95887 -10.90159 -10.70386 -10.66692 -10.22898 -10.01792 -9.93248 -9.65042 -9.53938 -9.43967 -8.87841 -8.77828 -7.90231 -6.89829 -5.80333 -3.13170 0.59810 0.86683 2.38221 2.74683 3.36953 3.40986 3.42434 3.54253 3.86296 3.95680 4.01502 4.12398 4.16623 4.33455 4.44390 4.49727 4.65486 4.83149 4.93327 4.97908 5.04948 5.15074 5.16639 5.22743 5.28050 5.30920 5.34964 5.43720 5.46518 5.56489 5.61058 5.66274 5.71147 5.80608 5.86777 6.00020 6.11823 6.12947 6.29726 6.33584 6.51246 6.58484 6.69659 6.94023 7.15511 7.20814 7.31203 7.47362 7.55993 7.82514 7.93739 7.93999 9.00298 9.67088 10.55233 11.36327 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.002320 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.565270 B =12065.927661 C =12918.821982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 H 0.109 0.891 4 C 0.520 3.480 5 O -0.538 6.538 6 N -0.606 5.606 7 C 0.110 3.890 8 C 0.039 3.961 9 N -0.529 5.529 10 C 0.035 3.965 11 C 0.133 3.867 12 N -0.609 5.609 13 C -0.223 4.223 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.126 3.874 22 C 0.037 3.963 23 C 0.117 3.883 24 C -0.177 4.177 25 C 0.186 3.814 26 N -0.522 5.522 27 C 0.289 3.711 28 N -0.522 5.522 29 C 0.155 3.845 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.254 0.746 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.165 0.835 48 H 0.195 0.805 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -3.717 -15.276 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.127 0.873 4 C 0.307 3.693 5 O -0.415 6.415 6 N -0.339 5.339 7 C -0.013 4.013 8 C -0.090 4.090 9 N -0.253 5.253 10 C -0.074 4.074 11 C 0.006 3.994 12 N -0.336 5.336 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.743 3.257 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.000 4.000 22 C -0.091 4.091 23 C -0.005 4.005 24 C -0.181 4.181 25 C 0.020 3.980 26 N -0.235 5.235 27 C 0.002 3.998 28 N -0.235 5.235 29 C -0.011 4.011 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.182 0.818 48 H 0.212 0.788 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.664 -4.749 -15.826 24.188 hybrid contribution 1.523 0.799 1.135 2.060 sum -16.141 -3.950 -14.691 22.181 Atomic orbital electron populations 1.21811 0.91131 1.03453 1.03464 1.20146 0.98208 1.00291 0.89913 0.87303 1.20322 0.78519 0.86292 0.84135 1.90721 1.44498 1.20620 1.85651 1.48132 1.64951 1.14591 1.06227 1.22003 0.98241 0.80731 1.00350 1.22410 0.98183 0.97639 0.90745 1.62035 1.48668 1.03007 1.11584 1.24297 0.92984 0.96759 0.93338 1.22938 0.90193 0.99544 0.86745 1.45819 1.08410 1.77200 1.02179 1.18962 0.89926 1.38239 0.87906 0.90222 1.24791 0.97501 1.01995 0.96161 1.69808 1.22557 1.52850 1.11718 0.86194 0.81363 0.78231 0.79946 1.21154 1.21561 1.21022 1.22649 0.86680 0.96571 0.94100 1.22584 0.95673 0.90211 1.00663 1.21817 0.99067 0.95741 0.83864 1.21142 1.01747 0.97242 0.97976 1.23041 0.92438 0.90756 0.91750 1.68485 1.11736 1.39336 1.03989 1.24999 0.90058 0.87532 0.97232 1.68439 1.22857 1.10516 1.21691 1.23138 0.89691 1.00145 0.88128 0.91664 0.90777 0.91026 0.90244 0.89658 0.89486 0.94102 0.88251 0.95221 0.91340 0.93625 0.93646 0.94586 0.93422 0.88941 0.90740 0.88922 0.81752 0.78845 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.73 37.16 0.32 -0.43 16 2 C -0.06 -0.48 2.08 -92.92 -0.19 -0.67 16 3 H 0.11 0.61 6.50 -51.93 -0.34 0.27 16 4 C 0.52 5.81 6.87 -10.99 -0.08 5.74 16 5 O -0.54 -8.04 14.21 5.56 0.08 -7.96 16 6 N -0.61 -6.43 3.01 -172.47 -0.52 -6.95 16 7 C 0.11 0.90 5.46 -3.61 -0.02 0.88 16 8 C 0.04 0.44 5.61 -3.70 -0.02 0.42 16 9 N -0.53 -7.39 4.76 -228.23 -1.09 -8.47 16 10 C 0.03 0.61 4.03 -69.90 -0.28 0.33 16 11 C 0.13 3.02 6.81 -2.84 -0.02 3.00 16 12 N -0.61 -15.40 3.70 -177.83 -0.66 -16.05 16 13 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -27.34 11.39 55.49 0.63 -26.71 16 17 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.13 2.50 8.42 -2.96 -0.02 2.48 16 22 C 0.04 0.54 4.47 -3.71 -0.02 0.52 16 23 C 0.12 1.41 6.61 -3.61 -0.02 1.39 16 24 C -0.18 -1.66 4.54 -104.35 -0.47 -2.14 16 25 C 0.19 2.00 9.22 -17.20 -0.16 1.84 16 26 N -0.52 -6.02 10.44 -14.58 -0.15 -6.17 16 27 C 0.29 2.97 12.28 -92.16 -1.13 1.84 16 28 N -0.52 -5.66 10.44 -14.58 -0.15 -5.81 16 29 C 0.15 1.45 10.96 -17.21 -0.19 1.26 16 30 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 31 H 0.07 0.32 6.81 -51.93 -0.35 -0.04 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.09 0.47 5.32 -51.93 -0.28 0.19 16 35 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 1.73 8.04 -51.93 -0.42 1.31 16 38 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 39 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 40 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.70 6.23 -51.93 -0.32 0.37 16 43 H 0.05 0.81 6.45 -51.93 -0.33 0.47 16 44 H 0.09 1.43 6.06 -51.93 -0.31 1.11 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.22 7.04 -51.93 -0.37 0.86 16 47 H 0.17 1.65 7.41 -52.49 -0.39 1.26 16 48 H 0.20 1.36 8.06 -52.48 -0.42 0.93 16 49 H 0.17 1.09 8.01 -52.48 -0.42 0.66 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -34.81 382.42 -10.78 -45.58 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.10 Total: -0.09 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.56 Total: 9.77 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -1.94 Total: -70.16 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.81 -10.78 -45.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941534337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.567 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds