Wall clock time and date at job start Wed Apr 1 2020 04:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47307 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00560 * 2 1 3 5 5 O 1.21282 * 119.99914 * 106.93984 * 4 2 1 6 6 N 1.34774 * 119.99844 * 286.93569 * 4 2 1 7 7 C 1.47082 * 120.88236 * 354.54845 * 6 4 2 8 8 C 1.53228 * 108.52515 * 231.20275 * 7 6 4 9 9 N 1.46902 * 109.34070 * 306.17646 * 8 7 6 10 10 C 1.46898 * 110.99687 * 187.25252 * 9 8 7 11 11 C 1.53947 * 113.74336 * 273.73618 * 10 9 8 12 12 N 1.47816 * 86.03889 * 222.09094 * 11 10 9 13 13 C 1.36938 * 134.45138 * 204.64697 * 12 11 10 14 14 H 1.08002 * 119.99473 * 179.85806 * 13 12 11 15 15 C 1.38809 * 120.00339 * 359.86097 * 13 12 11 16 16 N 1.31621 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99942 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46903 * 59.99835 * 17 15 13 19 19 H 1.48494 * 109.46945 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46974 * 300.00169 * 17 15 13 21 21 C 1.47584 * 91.05087 * 24.54521 * 12 11 10 22 22 C 1.46897 * 111.27267 * 63.09881 * 9 8 7 23 23 C 1.47079 * 120.88286 * 174.57048 * 6 4 2 24 24 C 1.50702 * 109.46777 * 240.00334 * 2 1 3 25 25 C 1.38600 * 120.80430 * 299.71882 * 24 2 1 26 26 N 1.32334 * 119.10765 * 179.71994 * 25 24 2 27 27 C 1.31798 * 120.81149 * 0.56743 * 26 25 24 28 28 N 1.31788 * 121.75816 * 359.71136 * 27 26 25 29 29 C 1.32328 * 120.81875 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46982 * 185.17270 * 1 2 3 31 31 H 1.09001 * 109.46741 * 305.17076 * 1 2 3 32 32 H 1.08994 * 109.47025 * 65.16827 * 1 2 3 33 33 H 1.09007 * 109.62593 * 111.49009 * 7 6 4 34 34 H 1.08995 * 109.62790 * 350.91911 * 7 6 4 35 35 H 1.09000 * 109.49687 * 186.20974 * 8 7 6 36 36 H 1.09006 * 109.49157 * 66.13138 * 8 7 6 37 37 H 1.09002 * 112.95126 * 45.32905 * 10 9 8 38 38 H 1.09005 * 113.76331 * 336.34961 * 11 10 9 39 39 H 1.08996 * 113.77404 * 107.74699 * 11 10 9 40 40 H 0.96996 * 120.00069 * 180.02562 * 16 15 13 41 41 H 1.09000 * 113.76839 * 221.15537 * 21 12 11 42 42 H 1.09002 * 113.86691 * 89.77478 * 21 12 11 43 43 H 1.09007 * 109.48709 * 56.85864 * 22 9 8 44 44 H 1.08996 * 109.48981 * 176.93473 * 22 9 8 45 45 H 1.09000 * 109.63341 * 248.50756 * 23 6 4 46 46 H 1.09005 * 109.62699 * 9.08999 * 23 6 4 47 47 H 1.08001 * 120.44443 * 0.02562 * 25 24 2 48 48 H 1.08004 * 119.11294 * 179.72852 * 27 26 25 49 49 H 1.08003 * 120.44394 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5230 -1.8155 1.1347 6 7 1.9364 -0.1180 2.4371 7 6 1.4555 1.2664 2.5622 8 6 2.4613 2.0567 3.4058 9 7 2.6832 1.3586 4.6791 10 6 3.5069 2.1683 5.5868 11 6 5.0213 1.9845 5.3795 12 7 5.1182 1.9752 6.8545 13 6 6.1102 2.2672 7.7522 14 1 5.9218 2.1807 8.8121 15 6 7.3578 2.6744 7.2999 16 7 7.5875 2.7794 6.0082 17 14 8.7112 3.0720 8.5246 18 1 9.0024 1.8708 9.3477 19 1 9.9369 3.4801 7.7925 20 1 8.2697 4.1817 9.4072 21 6 3.7167 1.5278 6.9709 22 6 3.2825 0.0349 4.4639 23 6 2.3103 -0.8383 3.6637 24 6 2.0323 -0.7104 -1.2305 25 6 1.7124 -2.0387 -1.4636 26 7 2.1669 -2.6279 -2.5579 27 6 2.9234 -1.9706 -3.4139 28 7 3.2524 -0.7089 -3.2224 29 6 2.8297 -0.0527 -2.1538 30 1 -0.3633 -1.0234 0.0926 31 1 -0.3633 0.5920 0.8401 32 1 -0.3633 0.4316 -0.9326 33 1 0.4818 1.2728 3.0521 34 1 1.3737 1.7164 1.5729 35 1 2.0677 3.0541 3.6015 36 1 3.4049 2.1372 2.8660 37 1 3.1933 3.2113 5.6289 38 1 5.2891 1.0351 4.9158 39 1 5.5078 2.8402 4.9114 40 1 8.4594 3.0636 5.6922 41 1 3.1635 2.0196 7.7710 42 1 3.5987 0.4442 6.9760 43 1 4.2147 0.1436 3.9093 44 1 3.4843 -0.4339 5.4269 45 1 1.4188 -1.0342 4.2595 46 1 2.7937 -1.7797 3.4025 47 1 1.0963 -2.5841 -0.7640 48 1 3.2830 -2.4797 -4.2960 49 1 3.1027 0.9813 -2.0031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941534337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:34 Heat of formation + Delta-G solvation = 71.606382 kcal Electronic energy + Delta-G solvation = -30599.788566 eV Core-core repulsion = 26563.651101 eV Total energy + Delta-G solvation = -4036.137465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.27836 -41.34693 -40.31730 -37.99909 -35.94326 -35.15225 -34.68197 -33.77140 -32.30315 -31.02947 -29.71354 -27.80514 -26.63893 -26.28548 -25.50602 -25.12325 -24.50541 -23.67412 -22.15229 -20.54565 -19.67443 -18.89681 -18.75642 -18.57466 -17.84303 -17.26587 -16.96261 -16.82332 -16.38613 -16.15939 -15.79251 -15.67403 -15.56601 -15.29407 -14.81240 -14.60821 -14.54798 -14.49320 -14.03655 -13.81372 -13.47187 -13.41556 -13.28687 -13.13415 -13.07978 -12.80051 -12.72743 -12.55757 -12.31430 -12.19837 -11.97485 -11.89663 -11.83137 -11.77086 -11.71733 -11.39871 -10.89362 -10.80966 -10.39162 -10.21366 -9.78706 -9.24537 -8.87990 -7.93513 -5.27650 -0.13183 0.10904 1.42354 1.45868 1.51954 1.54890 1.92282 2.43042 2.78312 2.85238 3.20553 3.26369 3.26775 3.42277 3.48173 3.51153 3.65678 3.83011 3.83623 3.96590 4.04966 4.13460 4.15697 4.27331 4.36757 4.41309 4.48163 4.51408 4.57936 4.64469 4.74848 4.77643 4.85607 4.88822 4.89718 4.94188 4.97455 4.98972 5.14254 5.20232 5.28775 5.35069 5.40821 5.46080 5.46733 5.88443 5.95288 6.03047 6.17355 6.41223 6.87799 7.07141 7.09560 7.57582 8.52818 9.22332 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.002320 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.565270 B =12065.927661 C =12918.821982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 H 0.138 0.862 4 C 0.516 3.484 5 O -0.583 6.583 6 N -0.607 5.607 7 C 0.114 3.886 8 C 0.032 3.968 9 N -0.514 5.514 10 C 0.070 3.930 11 C 0.133 3.867 12 N -0.642 5.642 13 C -0.233 4.233 14 H 0.085 0.915 15 C -0.070 4.070 16 N -0.956 5.956 17 Si 0.979 3.021 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.272 1.272 21 C 0.126 3.874 22 C 0.045 3.955 23 C 0.127 3.873 24 C -0.177 4.177 25 C 0.171 3.829 26 N -0.545 5.545 27 C 0.280 3.720 28 N -0.539 5.539 29 C 0.149 3.851 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.020 0.980 37 H 0.111 0.889 38 H 0.013 0.987 39 H 0.032 0.968 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.014 0.986 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.164 0.836 48 H 0.218 0.782 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.629 -2.283 -15.318 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 H 0.156 0.844 4 C 0.305 3.695 5 O -0.464 6.464 6 N -0.339 5.339 7 C -0.008 4.008 8 C -0.096 4.096 9 N -0.237 5.237 10 C -0.040 4.040 11 C 0.006 3.994 12 N -0.369 5.369 13 C -0.362 4.362 14 H 0.103 0.897 15 C -0.262 4.262 16 N -0.605 5.605 17 Si 0.807 3.193 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.198 1.198 21 C 0.002 3.998 22 C -0.084 4.084 23 C 0.004 3.996 24 C -0.181 4.181 25 C 0.005 3.995 26 N -0.259 5.259 27 C -0.007 4.007 28 N -0.253 5.253 29 C -0.016 4.016 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.039 0.961 37 H 0.129 0.871 38 H 0.030 0.970 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.181 0.819 48 H 0.234 0.766 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.224 -3.307 -15.856 25.910 hybrid contribution 2.275 0.303 1.146 2.565 sum -17.949 -3.003 -14.710 23.400 Atomic orbital electron populations 1.21841 0.88949 1.03494 1.05137 1.20222 0.99770 1.00694 0.86881 0.84427 1.20987 0.77582 0.85886 0.85045 1.90710 1.46507 1.22823 1.86311 1.48237 1.64563 1.15536 1.05574 1.22239 0.97813 0.78725 1.02030 1.22646 0.98436 0.99225 0.89280 1.62084 1.46300 1.02388 1.12952 1.23821 0.89733 0.97610 0.92817 1.22847 0.93990 0.97134 0.85466 1.46249 1.10046 1.77610 1.02968 1.19397 0.90831 1.37099 0.88846 0.89699 1.25656 0.99926 1.02775 0.97889 1.70018 1.22495 1.54429 1.13547 0.85139 0.78084 0.78294 0.77769 1.20500 1.22199 1.19751 1.22807 0.83907 0.97251 0.95884 1.22446 0.95138 0.90936 0.99877 1.21599 0.98912 0.94554 0.84562 1.21313 1.01434 0.96758 0.98643 1.23174 0.92844 0.91705 0.91737 1.68481 1.12637 1.40111 1.04705 1.25489 0.89774 0.87711 0.97765 1.68493 1.23415 1.10816 1.22558 1.23675 0.88991 1.01364 0.87595 0.92627 0.88825 0.89487 0.87823 0.85964 0.87131 0.96113 0.87081 0.96959 0.95002 0.94435 0.92150 0.93656 0.96800 0.90333 0.88763 0.90641 0.81914 0.76598 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.73 71.98 0.63 -0.32 16 2 C -0.05 -0.65 2.08 -12.29 -0.03 -0.68 16 3 H 0.14 0.89 6.50 -2.39 -0.02 0.88 16 4 C 0.52 10.69 6.87 87.66 0.60 11.30 16 5 O -0.58 -17.53 14.21 -3.04 -0.04 -17.57 16 6 N -0.61 -11.50 3.01 -817.96 -2.46 -13.96 16 7 C 0.11 1.37 5.46 86.34 0.47 1.84 16 8 C 0.03 0.63 5.61 86.38 0.48 1.12 16 9 N -0.51 -13.45 4.76 -875.97 -4.17 -17.61 16 10 C 0.07 2.39 4.03 46.67 0.19 2.58 16 11 C 0.13 6.24 6.81 86.44 0.59 6.83 16 12 N -0.64 -32.88 3.70 -716.53 -2.65 -35.53 16 13 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 14 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 16 N -0.96 -58.63 11.39 21.65 0.25 -58.38 16 17 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.13 4.90 8.42 86.49 0.73 5.63 16 22 C 0.04 1.30 4.47 86.38 0.39 1.68 16 23 C 0.13 2.94 6.61 86.35 0.57 3.51 16 24 C -0.18 -3.07 4.54 -19.69 -0.09 -3.16 16 25 C 0.17 3.64 9.22 84.70 0.78 4.42 16 26 N -0.55 -12.64 10.44 -200.04 -2.09 -14.73 16 27 C 0.28 5.66 12.28 180.88 2.22 7.88 16 28 N -0.54 -11.18 10.44 -200.05 -2.09 -13.27 16 29 C 0.15 2.53 10.96 84.70 0.93 3.46 16 30 H 0.05 0.52 7.69 -2.39 -0.02 0.50 16 31 H 0.09 0.31 6.81 -2.39 -0.02 0.30 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.12 0.64 5.32 -2.39 -0.01 0.62 16 35 H 0.11 1.71 8.04 -2.39 -0.02 1.69 16 36 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.11 3.63 8.04 -2.39 -0.02 3.61 16 38 H 0.01 0.64 5.65 -2.38 -0.01 0.62 16 39 H 0.03 1.71 7.17 -2.39 -0.02 1.69 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.71 6.23 -2.39 -0.01 1.69 16 43 H 0.01 0.49 6.45 -2.38 -0.02 0.48 16 44 H 0.08 2.46 6.06 -2.39 -0.01 2.45 16 45 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.04 7.04 -2.38 -0.02 2.02 16 47 H 0.16 3.35 7.41 -2.91 -0.02 3.32 16 48 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16 49 H 0.20 1.96 8.01 -2.91 -0.02 1.94 16 Total: -1.00 -80.03 382.42 -0.43 -80.46 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.97 Total: 12.17 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 9.83 Total: 30.27 kcal Atomic # 7 Polarization: -140.27 SS G_CDS: -13.21 Total: -153.48 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.04 Total: -17.57 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -80.03 -0.43 -80.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941534337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.067 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds