Wall clock time and date at job start Wed Apr 1 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00452 * 2 1 4 4 N 1.46505 * 109.47106 * 124.99910 * 3 2 1 5 5 C 1.34813 * 126.59266 * 125.00384 * 4 3 2 6 6 C 1.36593 * 106.84087 * 180.02562 * 5 4 3 7 7 C 1.47522 * 125.77270 * 179.97438 * 6 5 4 8 8 O 1.21593 * 120.00105 * 353.74832 * 7 6 5 9 9 N 1.34779 * 120.00049 * 173.75810 * 7 6 5 10 10 C 1.49721 * 122.75500 * 353.57287 * 9 7 6 11 11 C 1.53170 * 105.59322 * 111.65021 * 10 9 7 12 12 C 1.50956 * 111.89853 * 99.88025 * 11 10 9 13 13 H 1.09003 * 109.52796 * 58.20995 * 12 11 10 14 14 C 1.53755 * 111.20474 * 178.56275 * 12 11 10 15 15 N 1.47169 * 105.64869 * 150.25255 * 14 12 11 16 16 C 1.36933 * 126.10090 * 149.73099 * 15 14 12 17 17 H 1.08002 * 120.00225 * 347.93338 * 16 15 14 18 18 C 1.38809 * 120.00300 * 167.94061 * 16 15 14 19 19 N 1.31617 * 119.99881 * 342.20854 * 18 16 15 20 20 Si 1.86795 * 120.00446 * 162.21848 * 18 16 15 21 21 H 1.48501 * 109.47417 * 89.99233 * 20 18 16 22 22 H 1.48502 * 109.47526 * 209.99599 * 20 18 16 23 23 H 1.48502 * 109.47142 * 329.99654 * 20 18 16 24 24 C 1.46775 * 107.80068 * 329.68599 * 15 14 12 25 25 C 1.53835 * 107.91014 * 20.28839 * 24 15 14 26 26 H 1.09001 * 111.00446 * 118.49919 * 25 24 15 27 27 C 1.51862 * 109.23764 * 241.15084 * 25 24 15 28 28 C 1.43641 * 122.75459 * 173.61710 * 9 7 6 29 29 N 1.34402 * 108.45469 * 0.23866 * 6 5 4 30 30 N 1.28760 * 109.52441 * 359.59212 * 29 6 5 31 31 H 1.08002 * 119.99814 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00253 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99814 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.46967 * 5.00195 * 3 2 1 35 35 H 1.09003 * 109.47197 * 245.00079 * 3 2 1 36 36 H 1.07996 * 126.58135 * 359.97438 * 5 4 3 37 37 H 1.08996 * 110.21851 * 352.62800 * 10 9 7 38 38 H 1.09000 * 110.33101 * 230.72206 * 10 9 7 39 39 H 1.09001 * 108.98203 * 220.47765 * 11 10 9 40 40 H 1.09004 * 108.98374 * 339.27922 * 11 10 9 41 41 H 1.08999 * 110.25011 * 31.18467 * 14 12 11 42 42 H 1.09001 * 110.24110 * 269.30864 * 14 12 11 43 43 H 0.96997 * 120.00629 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.78356 * 260.67412 * 24 15 14 45 45 H 1.09003 * 109.77342 * 139.89461 * 24 15 14 46 46 H 1.08998 * 108.90883 * 79.19456 * 27 25 24 47 47 H 1.08998 * 108.83734 * 320.60806 * 27 25 24 48 48 H 1.08988 * 108.43007 * 359.29110 * 28 9 7 49 49 H 1.09002 * 108.42240 * 116.56016 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3230 1.5496 1.0741 6 6 4.7902 1.4858 2.3561 7 6 6.1943 1.6640 2.7721 8 8 7.0674 1.7760 1.9333 9 7 6.5093 1.7023 4.0820 10 6 5.4746 1.7112 5.1641 11 6 5.6074 0.3594 5.8719 12 6 6.3958 0.4704 7.1545 13 1 5.9114 1.1858 7.8191 14 6 6.4889 -0.8876 7.8694 15 7 7.7651 -0.8638 8.6020 16 6 8.0337 -1.5155 9.7760 17 1 7.2282 -1.9520 10.3479 18 6 9.3412 -1.6151 10.2312 19 7 10.3437 -1.4096 9.4033 20 14 9.6783 -2.0408 12.0184 21 1 9.7774 -3.5152 12.1659 22 1 10.9553 -1.4138 12.4444 23 1 8.5701 -1.5320 12.8660 24 6 8.6989 -0.0177 7.8494 25 6 7.8725 0.8916 6.9238 26 1 8.0305 1.9426 7.1659 27 6 8.2441 0.6056 5.4794 28 6 7.8653 1.7389 4.5544 29 7 3.7552 1.2276 3.1737 30 7 2.6730 1.1352 2.4821 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8499 -0.9353 0.0004 34 1 1.3586 2.1317 0.0896 35 1 2.6213 1.4025 -0.9314 36 1 4.9066 1.7375 0.1850 37 1 4.4791 1.8142 4.7325 38 1 5.6666 2.5237 5.8649 39 1 4.6116 -0.0210 6.0996 40 1 6.1107 -0.3417 5.2059 41 1 6.4880 -1.6983 7.1408 42 1 5.6577 -1.0056 8.5646 43 1 11.2574 -1.4795 9.7212 44 1 9.3648 -0.6423 7.2541 45 1 9.2828 0.5914 8.5394 46 1 7.7322 -0.3007 5.1558 47 1 9.3203 0.4441 5.4182 48 1 8.5314 1.7168 3.6920 49 1 8.0213 2.6803 5.0812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946810685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:54 Heat of formation + Delta-G solvation = 129.376875 kcal Electronic energy + Delta-G solvation = -30531.333391 eV Core-core repulsion = 26497.701043 eV Total energy + Delta-G solvation = -4033.632348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.49663 -40.07871 -38.38440 -36.47278 -35.78951 -33.34421 -32.93272 -32.25877 -31.07785 -30.57793 -28.00800 -27.22597 -27.18201 -24.65912 -23.61405 -22.90995 -22.49072 -21.94246 -20.79878 -20.19131 -19.71503 -18.14784 -18.01587 -16.85382 -16.54953 -16.35094 -16.04904 -15.76114 -15.31688 -14.98035 -14.72961 -14.44450 -14.25928 -13.93398 -13.80568 -13.34486 -13.23027 -12.99496 -12.71199 -12.52204 -12.40048 -12.20871 -12.02906 -11.71366 -11.53277 -11.42680 -11.09865 -10.89185 -10.79090 -10.71038 -10.57114 -10.46224 -10.22867 -10.16691 -9.93660 -9.72519 -9.68780 -9.54943 -9.48932 -9.42287 -8.52605 -8.45361 -6.72899 -5.70611 -2.99728 0.85178 1.23350 1.52451 2.03429 2.99447 3.19638 3.43538 3.49825 3.52438 3.86412 3.96003 4.11559 4.34984 4.40432 4.56284 4.66446 4.79510 5.00029 5.05325 5.19952 5.21877 5.27476 5.34183 5.40743 5.49674 5.57608 5.65150 5.73454 5.86756 5.89700 5.94408 5.99350 6.06491 6.08200 6.14234 6.27776 6.30726 6.43705 6.48555 6.59768 6.70790 6.73974 6.82386 6.94124 7.14506 7.44282 7.51185 7.69882 7.70909 7.83544 8.14937 8.32455 9.25002 9.88871 10.59912 11.43034 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002250 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.263931 B =12439.249510 C =13335.899596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.183 4.183 3 C 0.152 3.848 4 N -0.360 5.360 5 C 0.090 3.910 6 C -0.093 4.093 7 C 0.609 3.391 8 O -0.546 6.546 9 N -0.591 5.591 10 C 0.094 3.906 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.063 0.937 14 C 0.139 3.861 15 N -0.597 5.597 16 C -0.231 4.231 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.910 5.910 20 Si 0.904 3.096 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.176 3.824 25 C -0.103 4.103 26 H 0.067 0.933 27 C -0.126 4.126 28 C 0.110 3.890 29 N -0.199 5.199 30 N -0.060 5.060 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.204 0.796 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 8.841 -22.274 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.202 4.202 3 C 0.031 3.969 4 N -0.145 5.145 5 C -0.066 4.066 6 C -0.232 4.232 7 C 0.395 3.605 8 O -0.424 6.424 9 N -0.322 5.322 10 C -0.028 4.028 11 C -0.160 4.160 12 C -0.117 4.117 13 H 0.081 0.919 14 C 0.012 3.988 15 N -0.322 5.322 16 C -0.359 4.359 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.557 5.557 20 Si 0.734 3.266 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.051 3.949 25 C -0.122 4.122 26 H 0.086 0.914 27 C -0.164 4.164 28 C -0.013 4.013 29 N -0.073 5.073 30 N -0.040 5.040 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.221 0.779 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.189 8.560 -21.650 29.544 hybrid contribution 1.000 -0.190 0.228 1.043 sum -17.189 8.370 -21.422 28.713 Atomic orbital electron populations 1.24006 0.95463 1.02893 0.96111 1.22868 0.96396 0.97391 1.03520 1.21114 0.91932 0.98250 0.85582 1.50542 1.06613 1.48186 1.09132 1.23373 0.84600 0.98026 1.00612 1.21440 0.95404 1.15921 0.90415 1.16612 0.85099 0.76684 0.82101 1.90791 1.48449 1.52085 1.51063 1.47800 1.08638 1.70816 1.04914 1.23029 0.93050 0.98191 0.88570 1.21623 1.00464 0.96934 0.96935 1.21819 0.95214 0.99107 0.95542 0.91856 1.21312 0.90220 0.93528 0.93706 1.44360 1.08590 1.54870 1.24372 1.18960 0.92113 1.29751 0.95108 0.90748 1.24791 0.95545 1.01752 0.98252 1.70025 0.98015 1.54856 1.32759 0.86254 0.77339 0.77785 0.85228 1.21628 1.21633 1.20673 1.21022 0.90755 0.90907 0.92220 1.22199 0.95472 0.99793 0.94736 0.91444 1.21546 1.01837 0.98318 0.94677 1.20589 0.82442 0.99299 0.98983 1.74576 0.96441 1.10224 1.26029 1.82056 1.17372 1.21267 0.83299 0.87889 0.87317 0.86368 0.87978 0.86833 0.77902 0.86497 0.90707 0.91486 0.90967 0.96886 0.94259 0.93795 0.94605 0.93750 0.91093 0.90681 0.90104 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 14.32 29.02 0.42 -0.13 16 2 C -0.18 -0.83 9.72 -36.02 -0.35 -1.18 16 3 C 0.15 0.58 6.98 -5.19 -0.04 0.54 16 4 N -0.36 -2.87 3.68 -62.24 -0.23 -3.10 16 5 C 0.09 0.78 11.28 -16.84 -0.19 0.59 16 6 C -0.09 -1.13 6.76 -83.55 -0.56 -1.69 16 7 C 0.61 8.73 7.74 -12.47 -0.10 8.64 16 8 O -0.55 -8.92 16.41 5.28 0.09 -8.84 16 9 N -0.59 -8.34 2.67 -175.52 -0.47 -8.81 16 10 C 0.09 1.23 5.92 -2.16 -0.01 1.22 16 11 C -0.12 -1.79 4.57 -27.67 -0.13 -1.92 16 12 C -0.10 -1.69 2.62 -90.04 -0.24 -1.93 16 13 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.14 2.98 6.71 -3.28 -0.02 2.96 16 15 N -0.60 -15.63 3.37 -171.51 -0.58 -16.20 16 16 C -0.23 -6.60 10.20 -15.06 -0.15 -6.76 16 17 H 0.07 2.07 7.89 -52.49 -0.41 1.65 16 18 C -0.01 -0.18 5.29 -17.43 -0.09 -0.27 16 19 N -0.91 -27.34 11.17 55.49 0.62 -26.72 16 20 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.18 4.28 4.99 -3.46 -0.02 4.26 16 25 C -0.10 -1.89 3.13 -89.55 -0.28 -2.17 16 26 H 0.07 1.16 7.78 -51.93 -0.40 0.76 16 27 C -0.13 -2.07 4.52 -28.26 -0.13 -2.19 16 28 C 0.11 1.60 5.69 -6.51 -0.04 1.56 16 29 N -0.20 -2.53 8.91 32.85 0.29 -2.23 16 30 N -0.06 -0.69 13.63 60.35 0.82 0.14 16 31 H 0.10 0.26 7.84 -52.49 -0.41 -0.15 16 32 H 0.11 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.10 0.26 7.79 -51.93 -0.40 -0.15 16 35 H 0.11 0.11 8.08 -51.93 -0.42 -0.31 16 36 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.50 4.53 -51.98 -0.24 1.27 16 38 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.17 5.57 -51.93 -0.29 0.89 16 41 H 0.01 0.29 7.96 -51.93 -0.41 -0.12 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.96 7.02 -51.93 -0.36 0.60 16 45 H 0.04 1.19 7.55 -51.93 -0.39 0.80 16 46 H 0.07 1.25 5.78 -51.93 -0.30 0.95 16 47 H 0.07 1.26 7.65 -51.93 -0.40 0.87 16 48 H 0.08 1.20 7.02 -51.94 -0.36 0.84 16 49 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -34.93 386.12 -7.88 -42.82 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.29 Total: -1.79 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.93 Total: 1.52 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.46 Total: -56.93 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.93 -7.88 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946810685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.192 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds