Wall clock time and date at job start Wed Apr 1 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00452 * 2 1 4 4 N 1.46505 * 109.47106 * 124.99910 * 3 2 1 5 5 C 1.34813 * 126.59266 * 125.00384 * 4 3 2 6 6 C 1.36593 * 106.84087 * 180.02562 * 5 4 3 7 7 C 1.47522 * 125.77270 * 179.97438 * 6 5 4 8 8 O 1.21593 * 120.00105 * 353.74832 * 7 6 5 9 9 N 1.34779 * 120.00049 * 173.75810 * 7 6 5 10 10 C 1.49721 * 122.75500 * 353.57287 * 9 7 6 11 11 C 1.53170 * 105.59322 * 111.65021 * 10 9 7 12 12 C 1.50956 * 111.89853 * 99.88025 * 11 10 9 13 13 H 1.09003 * 109.52796 * 58.20995 * 12 11 10 14 14 C 1.53755 * 111.20474 * 178.56275 * 12 11 10 15 15 N 1.47169 * 105.64869 * 150.25255 * 14 12 11 16 16 C 1.36933 * 126.10090 * 149.73099 * 15 14 12 17 17 H 1.08002 * 120.00225 * 347.93338 * 16 15 14 18 18 C 1.38809 * 120.00300 * 167.94061 * 16 15 14 19 19 N 1.31617 * 119.99881 * 342.20854 * 18 16 15 20 20 Si 1.86795 * 120.00446 * 162.21848 * 18 16 15 21 21 H 1.48501 * 109.47417 * 89.99233 * 20 18 16 22 22 H 1.48502 * 109.47526 * 209.99599 * 20 18 16 23 23 H 1.48502 * 109.47142 * 329.99654 * 20 18 16 24 24 C 1.46775 * 107.80068 * 329.68599 * 15 14 12 25 25 C 1.53835 * 107.91014 * 20.28839 * 24 15 14 26 26 H 1.09001 * 111.00446 * 118.49919 * 25 24 15 27 27 C 1.51862 * 109.23764 * 241.15084 * 25 24 15 28 28 C 1.43641 * 122.75459 * 173.61710 * 9 7 6 29 29 N 1.34402 * 108.45469 * 0.23866 * 6 5 4 30 30 N 1.28760 * 109.52441 * 359.59212 * 29 6 5 31 31 H 1.08002 * 119.99814 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00253 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.99814 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.46967 * 5.00195 * 3 2 1 35 35 H 1.09003 * 109.47197 * 245.00079 * 3 2 1 36 36 H 1.07996 * 126.58135 * 359.97438 * 5 4 3 37 37 H 1.08996 * 110.21851 * 352.62800 * 10 9 7 38 38 H 1.09000 * 110.33101 * 230.72206 * 10 9 7 39 39 H 1.09001 * 108.98203 * 220.47765 * 11 10 9 40 40 H 1.09004 * 108.98374 * 339.27922 * 11 10 9 41 41 H 1.08999 * 110.25011 * 31.18467 * 14 12 11 42 42 H 1.09001 * 110.24110 * 269.30864 * 14 12 11 43 43 H 0.96997 * 120.00629 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.78356 * 260.67412 * 24 15 14 45 45 H 1.09003 * 109.77342 * 139.89461 * 24 15 14 46 46 H 1.08998 * 108.90883 * 79.19456 * 27 25 24 47 47 H 1.08998 * 108.83734 * 320.60806 * 27 25 24 48 48 H 1.08988 * 108.43007 * 359.29110 * 28 9 7 49 49 H 1.09002 * 108.42240 * 116.56016 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3230 1.5496 1.0741 6 6 4.7902 1.4858 2.3561 7 6 6.1943 1.6640 2.7721 8 8 7.0674 1.7760 1.9333 9 7 6.5093 1.7023 4.0820 10 6 5.4746 1.7112 5.1641 11 6 5.6074 0.3594 5.8719 12 6 6.3958 0.4704 7.1545 13 1 5.9114 1.1858 7.8191 14 6 6.4889 -0.8876 7.8694 15 7 7.7651 -0.8638 8.6020 16 6 8.0337 -1.5155 9.7760 17 1 7.2282 -1.9520 10.3479 18 6 9.3412 -1.6151 10.2312 19 7 10.3437 -1.4096 9.4033 20 14 9.6783 -2.0408 12.0184 21 1 9.7774 -3.5152 12.1659 22 1 10.9553 -1.4138 12.4444 23 1 8.5701 -1.5320 12.8660 24 6 8.6989 -0.0177 7.8494 25 6 7.8725 0.8916 6.9238 26 1 8.0305 1.9426 7.1659 27 6 8.2441 0.6056 5.4794 28 6 7.8653 1.7389 4.5544 29 7 3.7552 1.2276 3.1737 30 7 2.6730 1.1352 2.4821 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8499 -0.9353 0.0004 34 1 1.3586 2.1317 0.0896 35 1 2.6213 1.4025 -0.9314 36 1 4.9066 1.7375 0.1850 37 1 4.4791 1.8142 4.7325 38 1 5.6666 2.5237 5.8649 39 1 4.6116 -0.0210 6.0996 40 1 6.1107 -0.3417 5.2059 41 1 6.4880 -1.6983 7.1408 42 1 5.6577 -1.0056 8.5646 43 1 11.2574 -1.4795 9.7212 44 1 9.3648 -0.6423 7.2541 45 1 9.2828 0.5914 8.5394 46 1 7.7322 -0.3007 5.1558 47 1 9.3203 0.4441 5.4182 48 1 8.5314 1.7168 3.6920 49 1 8.0213 2.6803 5.0812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946810685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:53 Heat of formation + Delta-G solvation = 107.270348 kcal Electronic energy + Delta-G solvation = -30532.292002 eV Core-core repulsion = 26497.701043 eV Total energy + Delta-G solvation = -4034.590959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.25141 -41.31235 -39.77192 -37.27809 -36.89311 -34.83517 -33.88057 -33.46250 -32.55000 -31.82208 -29.27930 -28.78483 -27.99296 -26.26870 -24.93922 -24.12594 -23.35635 -22.95109 -22.11727 -21.28156 -20.55434 -19.68600 -18.94949 -18.69116 -17.52091 -17.13549 -17.02925 -16.75896 -16.36142 -16.29525 -16.06072 -15.56614 -15.41033 -15.13403 -14.95153 -14.59863 -14.45932 -14.38457 -13.93002 -13.73459 -13.47649 -13.31991 -13.20821 -12.97523 -12.91403 -12.70292 -12.57828 -12.38453 -12.35918 -12.12247 -12.00170 -11.72113 -11.70824 -11.37739 -11.35882 -11.19842 -10.95690 -10.89427 -10.62579 -10.55870 -10.30699 -9.63276 -8.86783 -7.90162 -5.22204 0.17582 0.61488 0.81321 1.44867 1.46881 1.57024 1.61086 1.96960 2.20679 2.50154 3.11039 3.27234 3.41408 3.63636 3.74314 3.78434 3.84337 3.91507 3.98173 4.00996 4.06781 4.14099 4.21787 4.34942 4.44723 4.54990 4.56242 4.61679 4.70055 4.74622 4.77077 4.80425 4.95667 4.97807 5.00779 5.04320 5.18767 5.26565 5.27389 5.33559 5.42772 5.48569 5.56065 5.58885 5.62920 5.69428 5.73612 5.78357 6.20381 6.37162 6.86180 7.07823 7.12219 7.77601 8.47258 9.22563 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.002250 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.263931 B =12439.249510 C =13335.899596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.198 4.198 3 C 0.143 3.857 4 N -0.346 5.346 5 C 0.112 3.888 6 C -0.123 4.123 7 C 0.608 3.392 8 O -0.572 6.572 9 N -0.595 5.595 10 C 0.102 3.898 11 C -0.110 4.110 12 C -0.081 4.081 13 H 0.077 0.923 14 C 0.133 3.867 15 N -0.620 5.620 16 C -0.248 4.248 17 H 0.078 0.922 18 C -0.064 4.064 19 N -0.943 5.943 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.186 3.814 25 C -0.090 4.090 26 H 0.087 0.913 27 C -0.113 4.113 28 C 0.119 3.881 29 N -0.218 5.218 30 N -0.083 5.083 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.237 0.763 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.000 1.000 45 H 0.010 0.990 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 10.279 -23.608 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.217 4.217 3 C 0.025 3.975 4 N -0.130 5.130 5 C -0.046 4.046 6 C -0.262 4.262 7 C 0.396 3.604 8 O -0.451 6.451 9 N -0.325 5.325 10 C -0.019 4.019 11 C -0.148 4.148 12 C -0.101 4.101 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.345 5.345 16 C -0.377 4.377 17 H 0.096 0.904 18 C -0.258 4.258 19 N -0.591 5.591 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.194 1.194 24 C 0.060 3.940 25 C -0.109 4.109 26 H 0.105 0.895 27 C -0.152 4.152 28 C -0.005 4.005 29 N -0.091 5.091 30 N -0.063 5.063 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.166 0.834 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.018 0.982 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.537 9.993 -22.997 32.411 hybrid contribution 1.609 -0.728 0.535 1.846 sum -18.928 9.264 -22.461 30.800 Atomic orbital electron populations 1.24196 0.95363 1.03729 0.94777 1.22874 0.96750 0.97385 1.04729 1.21594 0.92190 0.98345 0.85367 1.50825 1.06983 1.46286 1.08925 1.23843 0.84798 0.95528 1.00436 1.21329 0.94420 1.18532 0.91902 1.16898 0.85906 0.75812 0.81738 1.90767 1.49469 1.53303 1.51583 1.47851 1.08445 1.70880 1.05321 1.23019 0.93361 0.97223 0.88346 1.21501 1.00188 0.97925 0.95182 1.21717 0.94851 0.96714 0.96773 0.90460 1.21508 0.88472 0.95657 0.93577 1.44711 1.10463 1.54898 1.24437 1.19360 0.92429 1.29633 0.96232 0.90422 1.25671 0.95372 1.02376 1.02352 1.70210 0.98068 1.56321 1.34500 0.85161 0.77102 0.77483 0.80066 1.21154 1.21863 1.19391 1.20849 0.90888 0.90553 0.91710 1.22071 0.95109 0.99358 0.94358 0.89461 1.21383 1.01097 0.98783 0.93925 1.20402 0.82983 0.98744 0.98353 1.74487 0.96773 1.10883 1.26994 1.81967 1.17149 1.22179 0.85008 0.86464 0.87189 0.87629 0.86159 0.83362 0.74631 0.85616 0.89354 0.90359 0.92535 0.97733 0.93599 0.94283 0.98170 0.97195 0.92473 0.91678 0.90481 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 14.32 67.79 0.97 0.21 16 2 C -0.20 -1.40 9.72 25.65 0.25 -1.15 16 3 C 0.14 0.62 6.98 85.63 0.60 1.21 16 4 N -0.35 -4.58 3.68 -350.81 -1.29 -5.87 16 5 C 0.11 1.62 11.28 83.85 0.95 2.57 16 6 C -0.12 -2.77 6.76 40.81 0.28 -2.49 16 7 C 0.61 16.68 7.74 86.69 0.67 17.35 16 8 O -0.57 -18.05 16.41 -4.01 -0.07 -18.12 16 9 N -0.59 -15.96 2.67 -827.47 -2.21 -18.17 16 10 C 0.10 2.48 5.92 85.81 0.51 2.99 16 11 C -0.11 -3.10 4.57 29.99 0.14 -2.96 16 12 C -0.08 -2.75 2.62 -10.42 -0.03 -2.77 16 13 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 14 C 0.13 5.75 6.71 86.51 0.58 6.33 16 15 N -0.62 -33.31 3.37 -696.52 -2.35 -35.66 16 16 C -0.25 -14.44 10.20 84.03 0.86 -13.59 16 17 H 0.08 4.35 7.89 -2.91 -0.02 4.33 16 18 C -0.06 -3.75 5.29 84.86 0.45 -3.30 16 19 N -0.94 -58.78 11.17 21.65 0.24 -58.54 16 20 Si 0.97 46.95 29.59 68.60 2.03 48.98 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.19 9.37 4.99 86.61 0.43 9.81 16 25 C -0.09 -3.29 3.13 -10.10 -0.03 -3.32 16 26 H 0.09 2.89 7.78 -2.39 -0.02 2.88 16 27 C -0.11 -3.76 4.52 29.60 0.13 -3.63 16 28 C 0.12 3.32 5.69 86.29 0.49 3.81 16 29 N -0.22 -5.20 8.91 -50.00 -0.45 -5.64 16 30 N -0.08 -1.75 13.63 37.02 0.50 -1.25 16 31 H 0.12 0.27 7.84 -2.91 -0.02 0.25 16 32 H 0.11 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.12 0.15 7.79 -2.38 -0.02 0.13 16 35 H 0.15 -0.37 8.08 -2.39 -0.02 -0.39 16 36 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.13 2.98 4.53 -2.45 -0.01 2.97 16 38 H 0.09 1.94 7.84 -2.39 -0.02 1.92 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 1.81 5.57 -2.38 -0.01 1.80 16 41 H 0.00 0.22 7.96 -2.39 -0.02 0.20 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.00 0.02 7.02 -2.39 -0.02 0.00 16 45 H 0.01 0.54 7.55 -2.39 -0.02 0.53 16 46 H 0.06 2.06 5.78 -2.39 -0.01 2.04 16 47 H 0.06 2.28 7.65 -2.39 -0.02 2.26 16 48 H 0.08 2.25 7.02 -2.39 -0.02 2.23 16 49 H 0.08 1.94 7.71 -2.39 -0.02 1.92 16 Total: -1.00 -78.80 386.12 4.61 -74.19 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.96 Total: 9.03 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.24 Total: 11.06 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.54 Total: -125.14 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.07 Total: -18.12 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.80 4.61 -74.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946810685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.458 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds