Wall clock time and date at job start Wed Apr 1 2020 04:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46812 * 2 1 4 4 C 1.34782 * 119.99932 * 84.42409 * 3 2 1 5 5 O 1.21281 * 119.99564 * 4.51338 * 4 3 2 6 6 C 1.50694 * 120.00046 * 184.51484 * 4 3 2 7 7 H 1.09000 * 109.53440 * 51.42742 * 6 4 3 8 8 C 1.53120 * 109.50753 * 291.32396 * 6 4 3 9 9 C 1.53117 * 109.16368 * 182.40594 * 8 6 4 10 10 C 1.53036 * 109.27833 * 57.65399 * 9 8 6 11 11 N 1.46851 * 109.52426 * 300.82208 * 10 9 8 12 12 C 1.46897 * 110.99681 * 185.84103 * 11 10 9 13 13 C 1.52993 * 109.47194 * 75.80318 * 12 11 10 14 14 F 1.39897 * 109.47392 * 294.90144 * 13 12 11 15 15 F 1.39901 * 109.47432 * 54.90197 * 13 12 11 16 16 C 1.46846 * 111.19736 * 61.74046 * 11 10 9 17 17 C 1.46504 * 120.00265 * 264.41649 * 3 2 1 18 18 C 1.53940 * 113.73690 * 36.27461 * 17 3 2 19 19 N 1.47586 * 86.11677 * 222.04371 * 18 17 3 20 20 C 1.36934 * 134.49473 * 204.63888 * 19 18 17 21 21 H 1.07995 * 119.99709 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99779 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99754 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46732 * 60.00041 * 24 22 20 26 26 H 1.48498 * 109.46735 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46887 * 299.99882 * 24 22 20 28 28 C 1.47588 * 91.01139 * 24.64207 * 19 18 17 29 29 H 1.08994 * 109.46878 * 304.62364 * 1 2 3 30 30 H 1.09007 * 109.46557 * 64.62640 * 1 2 3 31 31 H 1.09000 * 109.46617 * 184.62155 * 1 2 3 32 32 H 1.09001 * 109.47159 * 240.00588 * 2 1 3 33 33 H 1.08993 * 109.47274 * 119.99782 * 2 1 3 34 34 H 1.09004 * 109.52152 * 62.49503 * 8 6 4 35 35 H 1.09002 * 109.51996 * 302.31375 * 8 6 4 36 36 H 1.08999 * 109.50233 * 177.59986 * 9 8 6 37 37 H 1.08998 * 109.49660 * 297.67293 * 9 8 6 38 38 H 1.09004 * 109.45817 * 60.83649 * 10 9 8 39 39 H 1.09000 * 109.46009 * 180.81758 * 10 9 8 40 40 H 1.08998 * 109.46632 * 195.80395 * 12 11 10 41 41 H 1.08999 * 109.46832 * 315.80113 * 12 11 10 42 42 H 1.09000 * 109.47155 * 174.90079 * 13 12 11 43 43 H 1.09004 * 109.45864 * 58.27540 * 16 11 10 44 44 H 1.08992 * 109.46280 * 178.23913 * 16 11 10 45 45 H 1.08996 * 112.94074 * 167.99992 * 17 3 2 46 46 H 1.09004 * 113.76999 * 336.34569 * 18 17 3 47 47 H 1.09000 * 113.76981 * 107.74022 * 18 17 3 48 48 H 0.96999 * 119.99796 * 179.97438 * 23 22 20 49 49 H 1.08995 * 113.76689 * 221.06115 * 28 19 18 50 50 H 1.08999 * 113.77024 * 89.65612 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1360 2.0544 1.1617 5 8 1.9163 1.4918 2.2134 6 6 2.5404 3.5061 1.1538 7 1 1.9005 4.0590 0.4661 8 6 3.9992 3.6279 0.7047 9 6 4.4200 5.0992 0.7571 10 6 4.2208 5.6314 2.1780 11 7 2.8097 5.4934 2.5605 12 6 2.5540 6.1199 3.8643 13 6 2.5144 7.6405 3.7005 14 9 3.7771 8.1008 3.3122 15 9 1.5733 7.9799 2.7225 16 6 2.3957 4.0845 2.5632 17 6 2.3788 2.0308 -1.2627 18 6 1.4732 1.6361 -2.4433 19 7 2.7132 1.5652 -3.2405 20 6 3.0052 1.6806 -4.5733 21 1 4.0261 1.5860 -4.9126 22 6 1.9891 1.9203 -5.4882 23 7 0.7449 2.0361 -5.0746 24 14 2.3875 2.0786 -7.3064 25 1 3.0138 0.8208 -7.7871 26 1 1.1372 2.3306 -8.0669 27 1 3.3281 3.2095 -7.5104 28 6 3.5122 1.3196 -2.0241 29 1 -0.3633 0.5839 0.8456 30 1 -0.3633 0.4404 -0.9286 31 1 -0.3632 -1.0244 0.0828 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.0985 3.2567 -0.3153 35 1 4.6350 3.0433 1.3696 36 1 5.4703 5.1874 0.4793 37 1 3.8102 5.6770 0.0626 38 1 4.8419 5.0619 2.8695 39 1 4.5058 6.6828 2.2153 40 1 1.5974 5.7713 4.2535 41 1 3.3491 5.8499 4.5593 42 1 2.2355 8.1009 4.6483 43 1 3.0254 3.5224 3.2530 44 1 1.3555 4.0123 2.8804 45 1 2.5259 3.1060 -1.1606 46 1 0.9780 0.6737 -2.3145 47 1 0.7928 2.4271 -2.7587 48 1 0.0350 2.2040 -5.7138 49 1 4.4597 1.8580 -2.0048 50 1 3.6158 0.2643 -1.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951560558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:12 Heat of formation + Delta-G solvation = -74.235205 kcal Electronic energy + Delta-G solvation = -32385.730130 eV Core-core repulsion = 27892.579313 eV Total energy + Delta-G solvation = -4493.150817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.08677 -47.07001 -40.50420 -38.69082 -37.65667 -34.52982 -34.22180 -32.06676 -31.38964 -30.20855 -29.20721 -27.48489 -25.03226 -24.54070 -24.30426 -23.37588 -22.50803 -22.13412 -20.18522 -19.76365 -18.29426 -17.88184 -17.48962 -17.29229 -16.68246 -16.50126 -15.82444 -15.63816 -15.03167 -14.83819 -14.71438 -14.43836 -14.08383 -13.93575 -13.89530 -13.63885 -13.41903 -13.36611 -13.21269 -12.79670 -12.60594 -12.59726 -12.34664 -12.11339 -12.03752 -11.65747 -11.64146 -11.46848 -11.32722 -11.14965 -10.95263 -10.85951 -10.77390 -10.62940 -10.59742 -10.37415 -10.28183 -10.11799 -9.60305 -9.33763 -8.84832 -8.59543 -8.17669 -6.96983 -5.83606 -3.16952 2.85400 3.14018 3.36795 3.40935 3.42366 3.53784 3.69695 4.01952 4.24940 4.40064 4.57522 4.65473 4.72598 4.88703 5.00178 5.06159 5.13072 5.16243 5.22290 5.29083 5.33858 5.43058 5.44930 5.52171 5.59433 5.63720 5.65997 5.68979 5.76333 5.84889 5.85869 5.93618 6.00694 6.14382 6.17727 6.21782 6.30798 6.40264 6.42991 6.57184 6.72296 6.81717 6.88998 7.11892 7.17257 7.45576 7.80363 7.90173 8.44507 8.97310 9.63551 10.49306 11.33207 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003044 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.362633 B = 9195.267736 C =10525.160077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.591 5.591 4 C 0.521 3.479 5 O -0.557 6.557 6 C -0.103 4.103 7 H 0.106 0.894 8 C -0.120 4.120 9 C -0.114 4.114 10 C 0.038 3.962 11 N -0.533 5.533 12 C 0.003 3.997 13 C 0.270 3.730 14 F -0.206 7.206 15 F -0.194 7.194 16 C 0.081 3.919 17 C 0.076 3.924 18 C 0.155 3.845 19 N -0.605 5.605 20 C -0.226 4.226 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.108 3.892 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.038 0.962 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 7.109 19.164 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.309 3.691 5 O -0.436 6.436 6 C -0.124 4.124 7 H 0.124 0.876 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.090 4.090 11 N -0.258 5.258 12 C -0.127 4.127 13 C 0.216 3.784 14 F -0.187 7.187 15 F -0.175 7.175 16 C -0.046 4.046 17 C -0.028 4.028 18 C 0.029 3.971 19 N -0.332 5.332 20 C -0.354 4.354 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.020 4.020 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.133 0.867 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.369 7.111 18.961 20.529 hybrid contribution 0.601 -0.465 -0.668 1.012 sum 3.970 6.645 18.293 19.864 Atomic orbital electron populations 1.22186 0.95905 1.01768 1.02703 1.21340 0.94476 0.82517 1.02596 1.48142 1.63552 1.13848 1.06725 1.20475 0.76662 0.88519 0.83431 1.90631 1.51824 1.70165 1.31016 1.21270 0.99193 0.93099 0.98881 0.87584 1.21776 0.93657 0.97328 1.03005 1.21558 1.01685 0.95535 0.96356 1.22547 0.86975 1.02657 0.96774 1.61811 1.21009 1.16431 1.26533 1.23189 1.04321 0.92701 0.92451 1.21967 0.72728 0.94341 0.89371 1.92889 1.42624 1.90408 1.92796 1.93017 1.64729 1.93452 1.66329 1.21808 1.01321 0.85982 0.95534 1.24259 0.99248 0.97787 0.81528 1.22706 0.90807 0.99388 0.84170 1.45682 1.03126 1.83043 1.01318 1.18924 0.93479 1.42833 0.80119 0.90137 1.24786 0.95236 1.01943 0.98121 1.69792 0.98840 1.54566 1.33346 0.86190 0.76991 0.77984 0.84518 1.21178 1.21507 1.20965 1.23005 0.94808 0.97219 0.86930 0.92717 0.91461 0.92160 0.89992 0.90851 0.89650 0.91893 0.90921 0.90480 0.94826 0.88841 0.87777 0.91561 0.87239 0.93685 0.90135 0.86743 0.94479 0.90481 0.93453 0.93480 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.98 37.16 0.37 -2.08 16 2 C 0.11 1.74 5.15 -4.04 -0.02 1.72 16 3 N -0.59 -9.44 2.70 -167.91 -0.45 -9.90 16 4 C 0.52 8.19 6.95 -10.99 -0.08 8.11 16 5 O -0.56 -9.96 15.61 5.56 0.09 -9.87 16 6 C -0.10 -1.37 1.84 -91.69 -0.17 -1.54 16 7 H 0.11 1.48 7.38 -51.93 -0.38 1.10 16 8 C -0.12 -1.47 4.88 -26.61 -0.13 -1.60 16 9 C -0.11 -1.25 6.09 -26.65 -0.16 -1.42 16 10 C 0.04 0.39 5.23 -3.83 -0.02 0.37 16 11 N -0.53 -5.79 4.42 -234.68 -1.04 -6.83 16 12 C 0.00 0.02 5.38 -3.83 -0.02 0.00 16 13 C 0.27 2.11 5.58 37.15 0.21 2.32 16 14 F -0.21 -1.99 14.59 2.25 0.03 -1.96 16 15 F -0.19 -2.17 17.17 2.25 0.04 -2.13 16 16 C 0.08 0.98 4.06 -3.83 -0.02 0.96 16 17 C 0.08 1.33 3.14 -70.15 -0.22 1.11 16 18 C 0.16 3.41 6.53 -2.97 -0.02 3.39 16 19 N -0.60 -14.63 3.70 -178.09 -0.66 -15.29 16 20 C -0.23 -6.08 10.70 -15.06 -0.16 -6.25 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 23 N -0.92 -26.27 11.38 55.49 0.63 -25.64 16 24 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.11 2.06 8.13 -2.97 -0.02 2.03 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.07 6.51 -51.93 -0.34 0.74 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 33 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 34 H 0.09 1.13 4.89 -51.93 -0.25 0.88 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.98 5.38 -51.93 -0.28 0.70 16 40 H 0.10 0.69 7.79 -51.93 -0.40 0.29 16 41 H 0.07 0.44 8.00 -51.93 -0.42 0.03 16 42 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.04 0.57 7.98 -51.93 -0.41 0.15 16 44 H 0.08 0.99 7.93 -51.93 -0.41 0.57 16 45 H 0.11 1.93 5.01 -51.93 -0.26 1.67 16 46 H 0.04 0.83 5.24 -51.93 -0.27 0.56 16 47 H 0.08 1.91 7.15 -51.93 -0.37 1.54 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 50 H 0.04 0.68 7.09 -51.93 -0.37 0.32 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -31.37 384.49 -8.94 -40.30 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.79 Total: 2.06 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.56 Total: 6.94 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -1.52 Total: -57.65 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.37 -8.94 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951560558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.933 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds