Wall clock time and date at job start Wed Apr 1 2020 04:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46812 * 2 1 4 4 C 1.34782 * 119.99932 * 84.42409 * 3 2 1 5 5 O 1.21281 * 119.99564 * 4.51338 * 4 3 2 6 6 C 1.50694 * 120.00046 * 184.51484 * 4 3 2 7 7 H 1.09000 * 109.53440 * 51.42742 * 6 4 3 8 8 C 1.53120 * 109.50753 * 291.32396 * 6 4 3 9 9 C 1.53117 * 109.16368 * 182.40594 * 8 6 4 10 10 C 1.53036 * 109.27833 * 57.65399 * 9 8 6 11 11 N 1.46851 * 109.52426 * 300.82208 * 10 9 8 12 12 C 1.46897 * 110.99681 * 185.84103 * 11 10 9 13 13 C 1.52993 * 109.47194 * 75.80318 * 12 11 10 14 14 F 1.39897 * 109.47392 * 294.90144 * 13 12 11 15 15 F 1.39901 * 109.47432 * 54.90197 * 13 12 11 16 16 C 1.46846 * 111.19736 * 61.74046 * 11 10 9 17 17 C 1.46504 * 120.00265 * 264.41649 * 3 2 1 18 18 C 1.53940 * 113.73690 * 36.27461 * 17 3 2 19 19 N 1.47586 * 86.11677 * 222.04371 * 18 17 3 20 20 C 1.36934 * 134.49473 * 204.63888 * 19 18 17 21 21 H 1.07995 * 119.99709 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99779 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99754 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46732 * 60.00041 * 24 22 20 26 26 H 1.48498 * 109.46735 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46887 * 299.99882 * 24 22 20 28 28 C 1.47588 * 91.01139 * 24.64207 * 19 18 17 29 29 H 1.08994 * 109.46878 * 304.62364 * 1 2 3 30 30 H 1.09007 * 109.46557 * 64.62640 * 1 2 3 31 31 H 1.09000 * 109.46617 * 184.62155 * 1 2 3 32 32 H 1.09001 * 109.47159 * 240.00588 * 2 1 3 33 33 H 1.08993 * 109.47274 * 119.99782 * 2 1 3 34 34 H 1.09004 * 109.52152 * 62.49503 * 8 6 4 35 35 H 1.09002 * 109.51996 * 302.31375 * 8 6 4 36 36 H 1.08999 * 109.50233 * 177.59986 * 9 8 6 37 37 H 1.08998 * 109.49660 * 297.67293 * 9 8 6 38 38 H 1.09004 * 109.45817 * 60.83649 * 10 9 8 39 39 H 1.09000 * 109.46009 * 180.81758 * 10 9 8 40 40 H 1.08998 * 109.46632 * 195.80395 * 12 11 10 41 41 H 1.08999 * 109.46832 * 315.80113 * 12 11 10 42 42 H 1.09000 * 109.47155 * 174.90079 * 13 12 11 43 43 H 1.09004 * 109.45864 * 58.27540 * 16 11 10 44 44 H 1.08992 * 109.46280 * 178.23913 * 16 11 10 45 45 H 1.08996 * 112.94074 * 167.99992 * 17 3 2 46 46 H 1.09004 * 113.76999 * 336.34569 * 18 17 3 47 47 H 1.09000 * 113.76981 * 107.74022 * 18 17 3 48 48 H 0.96999 * 119.99796 * 179.97438 * 23 22 20 49 49 H 1.08995 * 113.76689 * 221.06115 * 28 19 18 50 50 H 1.08999 * 113.77024 * 89.65612 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1360 2.0544 1.1617 5 8 1.9163 1.4918 2.2134 6 6 2.5404 3.5061 1.1538 7 1 1.9005 4.0590 0.4661 8 6 3.9992 3.6279 0.7047 9 6 4.4200 5.0992 0.7571 10 6 4.2208 5.6314 2.1780 11 7 2.8097 5.4934 2.5605 12 6 2.5540 6.1199 3.8643 13 6 2.5144 7.6405 3.7005 14 9 3.7771 8.1008 3.3122 15 9 1.5733 7.9799 2.7225 16 6 2.3957 4.0845 2.5632 17 6 2.3788 2.0308 -1.2627 18 6 1.4732 1.6361 -2.4433 19 7 2.7132 1.5652 -3.2405 20 6 3.0052 1.6806 -4.5733 21 1 4.0261 1.5860 -4.9126 22 6 1.9891 1.9203 -5.4882 23 7 0.7449 2.0361 -5.0746 24 14 2.3875 2.0786 -7.3064 25 1 3.0138 0.8208 -7.7871 26 1 1.1372 2.3306 -8.0669 27 1 3.3281 3.2095 -7.5104 28 6 3.5122 1.3196 -2.0241 29 1 -0.3633 0.5839 0.8456 30 1 -0.3633 0.4404 -0.9286 31 1 -0.3632 -1.0244 0.0828 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.0985 3.2567 -0.3153 35 1 4.6350 3.0433 1.3696 36 1 5.4703 5.1874 0.4793 37 1 3.8102 5.6770 0.0626 38 1 4.8419 5.0619 2.8695 39 1 4.5058 6.6828 2.2153 40 1 1.5974 5.7713 4.2535 41 1 3.3491 5.8499 4.5593 42 1 2.2355 8.1009 4.6483 43 1 3.0254 3.5224 3.2530 44 1 1.3555 4.0123 2.8804 45 1 2.5259 3.1060 -1.1606 46 1 0.9780 0.6737 -2.3145 47 1 0.7928 2.4271 -2.7587 48 1 0.0350 2.2040 -5.7138 49 1 4.4597 1.8580 -2.0048 50 1 3.6158 0.2643 -1.7721 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951560558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:11 Heat of formation + Delta-G solvation = -93.416912 kcal Electronic energy + Delta-G solvation = -32386.561911 eV Core-core repulsion = 27892.579313 eV Total energy + Delta-G solvation = -4493.982598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.76273 -47.77763 -41.78207 -39.88462 -39.01910 -36.02755 -35.12258 -33.97262 -32.47491 -31.34861 -30.00155 -29.34910 -26.65163 -25.68760 -25.32668 -24.97158 -23.56676 -22.97238 -21.61593 -20.90982 -19.63307 -18.92746 -18.54493 -18.22421 -18.12502 -17.42762 -17.11187 -16.71946 -16.60559 -15.96689 -15.85902 -15.65379 -15.52259 -14.96738 -14.86663 -14.73403 -14.55673 -14.40468 -14.16581 -14.13973 -13.84509 -13.53536 -13.46920 -13.32214 -13.29011 -13.20645 -12.89211 -12.76877 -12.66373 -12.55425 -12.32667 -12.17400 -12.06664 -11.99018 -11.88194 -11.78446 -11.57936 -11.47502 -11.20277 -10.85289 -10.59001 -9.59550 -9.39151 -8.92231 -7.89601 -5.23347 1.48597 1.50981 1.56635 1.57167 1.92339 2.49295 2.69870 3.09190 3.29150 3.38250 3.49216 3.54814 3.63812 3.74730 3.78808 3.85526 3.99541 4.12734 4.17556 4.20121 4.24849 4.34810 4.38344 4.41589 4.52660 4.53455 4.58669 4.58769 4.68491 4.73024 4.78170 4.84722 4.87540 4.89414 4.97387 4.98399 5.07367 5.19718 5.23600 5.29578 5.36843 5.41649 5.50213 5.63529 5.91739 5.92113 6.01370 6.44353 6.92190 7.13950 7.61226 8.53807 9.26703 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003044 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.362633 B = 9195.267736 C =10525.160077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.112 3.888 3 N -0.592 5.592 4 C 0.524 3.476 5 O -0.575 6.575 6 C -0.100 4.100 7 H 0.098 0.902 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.041 3.959 11 N -0.548 5.548 12 C 0.000 4.000 13 C 0.263 3.737 14 F -0.218 7.218 15 F -0.217 7.217 16 C 0.091 3.909 17 C 0.110 3.890 18 C 0.155 3.845 19 N -0.633 5.633 20 C -0.234 4.234 21 H 0.086 0.914 22 C -0.061 4.061 23 N -0.950 5.950 24 Si 0.976 3.024 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.112 3.888 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.156 0.844 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.032 0.968 47 H 0.043 0.957 48 H 0.249 0.751 49 H 0.065 0.935 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 7.519 20.612 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.323 5.323 4 C 0.313 3.687 5 O -0.455 6.455 6 C -0.122 4.122 7 H 0.116 0.884 8 C -0.151 4.151 9 C -0.149 4.149 10 C -0.086 4.086 11 N -0.273 5.273 12 C -0.129 4.129 13 C 0.209 3.791 14 F -0.199 7.199 15 F -0.198 7.198 16 C -0.037 4.037 17 C 0.006 3.994 18 C 0.029 3.971 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.201 1.201 28 C -0.014 4.014 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.173 0.827 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.738 7.518 20.444 22.292 hybrid contribution 0.196 -0.626 -1.028 1.219 sum 4.934 6.893 19.416 21.186 Atomic orbital electron populations 1.22102 0.95411 1.02859 1.01382 1.21396 0.94856 0.82169 1.02620 1.48103 1.63720 1.14161 1.06276 1.20835 0.75854 0.89270 0.82745 1.90623 1.52577 1.70821 1.31462 1.21277 0.99758 0.91238 0.99925 0.88385 1.21711 0.92814 0.98280 1.02274 1.21544 1.02280 0.94335 0.96716 1.22520 0.86990 1.02765 0.96359 1.61793 1.21272 1.15530 1.28711 1.23346 1.05641 0.92589 0.91331 1.22501 0.71726 0.94564 0.90276 1.92861 1.43484 1.90531 1.93036 1.92971 1.65622 1.93646 1.67599 1.21650 1.01058 0.86795 0.94208 1.23707 0.96656 0.98075 0.80988 1.22593 0.90421 0.98089 0.86019 1.45981 1.04969 1.83327 1.01711 1.19317 0.93757 1.41484 0.81679 0.89601 1.25573 0.95230 1.02603 1.02060 1.69982 0.99535 1.56212 1.34092 0.85190 0.76427 0.78176 0.79747 1.20538 1.22258 1.20078 1.23121 0.95504 0.97999 0.84754 0.93211 0.93295 0.90058 0.90501 0.90125 0.90704 0.91469 0.89470 0.91790 0.94060 0.88701 0.86540 0.89798 0.82717 0.94046 0.90543 0.85866 0.94999 0.93880 0.94256 0.91687 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.98 71.98 0.72 -3.89 16 2 C 0.11 3.35 5.15 86.38 0.45 3.80 16 3 N -0.59 -18.49 2.70 -803.52 -2.17 -20.67 16 4 C 0.52 15.94 6.95 87.65 0.61 16.55 16 5 O -0.57 -19.84 15.61 -3.03 -0.05 -19.88 16 6 C -0.10 -2.58 1.84 -11.49 -0.02 -2.60 16 7 H 0.10 2.71 7.38 -2.39 -0.02 2.69 16 8 C -0.11 -2.60 4.88 30.67 0.15 -2.45 16 9 C -0.11 -2.28 6.09 30.65 0.19 -2.10 16 10 C 0.04 0.78 5.23 86.32 0.45 1.23 16 11 N -0.55 -11.01 4.42 -896.38 -3.96 -14.97 16 12 C 0.00 -0.01 5.38 86.30 0.46 0.46 16 13 C 0.26 3.50 5.58 71.98 0.40 3.90 16 14 F -0.22 -3.80 14.59 44.97 0.66 -3.14 16 15 F -0.22 -4.59 17.17 44.97 0.77 -3.82 16 16 C 0.09 2.06 4.06 86.33 0.35 2.42 16 17 C 0.11 3.83 3.14 46.75 0.15 3.98 16 18 C 0.15 6.96 6.53 86.48 0.56 7.52 16 19 N -0.63 -30.70 3.70 -717.35 -2.65 -33.36 16 20 C -0.23 -12.62 10.70 84.03 0.90 -11.72 16 21 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 22 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 23 N -0.95 -55.71 11.38 21.65 0.25 -55.47 16 24 Si 0.98 44.61 29.55 68.60 2.03 46.64 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 C 0.11 4.18 8.13 86.48 0.70 4.88 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.59 6.51 -2.38 -0.02 1.57 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.39 6.15 -2.39 -0.01 2.37 16 33 H 0.08 2.33 7.53 -2.39 -0.02 2.31 16 34 H 0.07 1.88 4.89 -2.38 -0.01 1.86 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.09 1.82 5.38 -2.39 -0.01 1.81 16 40 H 0.12 1.27 7.79 -2.39 -0.02 1.25 16 41 H 0.08 0.86 8.00 -2.39 -0.02 0.84 16 42 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.04 0.97 7.98 -2.38 -0.02 0.95 16 44 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 45 H 0.12 4.12 5.01 -2.39 -0.01 4.11 16 46 H 0.03 1.47 5.24 -2.39 -0.01 1.46 16 47 H 0.04 2.22 7.15 -2.39 -0.02 2.21 16 48 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 49 H 0.06 2.21 7.72 -2.39 -0.02 2.19 16 50 H 0.05 1.64 7.09 -2.39 -0.02 1.62 16 Total: -1.00 -67.81 384.49 2.35 -65.46 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.95 Total: 20.14 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.54 Total: 19.06 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -8.54 Total: -124.46 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 1.43 Total: -6.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.81 2.35 -65.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951560558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.954 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds