Wall clock time and date at job start Wed Apr 1 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46936 * 2 1 4 4 C 1.34778 * 120.00126 * 82.97981 * 3 2 1 5 5 O 1.21286 * 120.00002 * 3.67526 * 4 3 2 6 6 C 1.50695 * 120.00040 * 183.68016 * 4 3 2 7 7 H 1.08994 * 109.50585 * 305.90167 * 6 4 3 8 8 C 1.53122 * 109.50255 * 65.97934 * 6 4 3 9 9 C 1.53123 * 109.21099 * 177.56242 * 8 6 4 10 10 C 1.53041 * 109.27503 * 302.44130 * 9 8 6 11 11 N 1.46841 * 109.57680 * 59.08180 * 10 9 8 12 12 C 1.46906 * 110.99858 * 174.18928 * 11 10 9 13 13 C 1.52999 * 109.46732 * 54.20313 * 12 11 10 14 14 F 1.39899 * 109.47223 * 295.31088 * 13 12 11 15 15 F 1.39902 * 109.47305 * 55.31235 * 13 12 11 16 16 C 1.46844 * 111.20364 * 298.28904 * 11 10 9 17 17 C 1.46502 * 119.99928 * 262.97798 * 3 2 1 18 18 C 1.53946 * 113.74291 * 29.76516 * 17 3 2 19 19 N 1.47577 * 86.11551 * 222.04634 * 18 17 3 20 20 C 1.36937 * 134.48915 * 204.63324 * 19 18 17 21 21 H 1.08003 * 119.99753 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00225 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99531 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46982 * 59.99567 * 24 22 20 26 26 H 1.48488 * 109.47367 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46873 * 299.99888 * 24 22 20 28 28 C 1.47578 * 91.01562 * 24.64181 * 19 18 17 29 29 H 1.09003 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47723 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46818 * 60.00351 * 1 2 3 32 32 H 1.09001 * 109.47723 * 239.99903 * 2 1 3 33 33 H 1.09004 * 109.47336 * 119.99606 * 2 1 3 34 34 H 1.09000 * 109.52381 * 297.49735 * 8 6 4 35 35 H 1.09000 * 109.52466 * 57.62860 * 8 6 4 36 36 H 1.09000 * 109.50467 * 62.31983 * 9 8 6 37 37 H 1.09001 * 109.49857 * 182.43815 * 9 8 6 38 38 H 1.09001 * 109.41063 * 299.06550 * 10 9 8 39 39 H 1.08997 * 109.45253 * 179.12846 * 10 9 8 40 40 H 1.09000 * 109.47065 * 174.19863 * 12 11 10 41 41 H 1.08994 * 109.47456 * 294.20226 * 12 11 10 42 42 H 1.09009 * 109.46778 * 175.31282 * 13 12 11 43 43 H 1.09004 * 109.46152 * 301.72954 * 16 11 10 44 44 H 1.08998 * 109.45794 * 181.74989 * 16 11 10 45 45 H 1.09002 * 112.94264 * 161.49741 * 17 3 2 46 46 H 1.09005 * 113.76529 * 336.34935 * 18 17 3 47 47 H 1.08993 * 113.76873 * 107.73925 * 18 17 3 48 48 H 0.97001 * 119.99546 * 180.02562 * 23 22 20 49 49 H 1.09003 * 113.76937 * 221.05852 * 28 19 18 50 50 H 1.09005 * 113.77114 * 89.66196 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1084 2.0642 1.1584 5 8 1.8490 1.5147 2.2081 6 6 2.5313 3.5105 1.1495 7 1 3.4802 3.6090 0.6224 8 6 1.4642 4.3509 0.4425 9 6 1.8711 5.8262 0.4908 10 6 2.0524 6.2529 1.9493 11 7 3.0836 5.4200 2.5811 12 6 3.3813 5.8915 3.9402 13 6 2.0849 5.9668 4.7492 14 9 1.2426 6.9345 4.1914 15 9 1.4464 4.7223 4.7239 16 6 2.6919 4.0048 2.5890 17 6 2.4087 2.0202 -1.2592 18 6 1.6366 1.4982 -2.4846 19 7 2.9341 1.5232 -3.1872 20 6 3.3131 1.6218 -4.4994 21 1 4.3611 1.6164 -4.7606 22 6 2.3504 1.7287 -5.4937 23 7 1.0734 1.7349 -5.1753 24 14 2.8674 1.8639 -7.2837 25 1 3.6463 0.6588 -7.6663 26 1 1.6596 1.9651 -8.1415 27 1 3.7076 3.0748 -7.4661 28 6 3.6591 1.3992 -1.9077 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.3773 4.0307 -0.5958 35 1 0.5059 4.2207 0.9453 36 1 2.8096 5.9627 -0.0467 37 1 1.0938 6.4334 0.0269 38 1 1.1096 6.1303 2.4824 39 1 2.3571 7.2988 1.9863 40 1 4.0707 5.1984 4.4223 41 1 3.8363 6.8807 3.8901 42 1 2.3152 6.2362 5.7801 43 1 1.7461 3.8927 3.1191 44 1 3.4613 3.4180 3.0908 45 1 2.4437 3.1075 -1.1910 46 1 1.2279 0.4964 -2.3522 47 1 0.9090 2.2069 -2.8800 48 1 0.4006 1.8092 -5.8702 49 1 4.5464 2.0289 -1.8427 50 1 3.8446 0.3683 -1.6060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951560559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:16 Heat of formation + Delta-G solvation = -61.661933 kcal Electronic energy + Delta-G solvation = -32871.253456 eV Core-core repulsion = 28378.647858 eV Total energy + Delta-G solvation = -4492.605599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.42732 -47.32170 -40.42427 -38.61764 -37.60320 -34.50144 -34.22854 -32.06639 -31.33985 -30.11980 -29.11217 -27.46829 -24.88504 -24.54564 -24.41751 -23.37072 -22.46175 -22.24992 -20.29860 -19.74220 -18.40566 -17.82773 -17.70929 -17.23149 -16.73503 -16.51242 -15.87739 -15.40066 -15.17001 -14.93669 -14.74081 -14.32709 -14.29437 -13.99001 -13.76016 -13.54905 -13.43505 -13.33370 -13.09501 -12.79404 -12.57772 -12.40626 -12.29925 -12.04722 -11.97184 -11.90040 -11.61271 -11.54093 -11.28297 -11.09691 -10.90802 -10.83684 -10.79602 -10.62749 -10.59147 -10.33522 -10.26438 -10.10344 -9.59574 -9.28352 -8.83979 -8.37200 -8.13415 -6.95881 -5.83443 -3.16385 2.92171 3.20360 3.36703 3.40830 3.42140 3.46945 3.70741 3.99843 4.19063 4.38565 4.42258 4.65373 4.79033 4.93801 5.01359 5.06090 5.16570 5.21874 5.26874 5.32472 5.41705 5.46413 5.47793 5.58252 5.64187 5.69557 5.73980 5.75102 5.78373 5.88784 5.94194 5.97166 6.08031 6.20306 6.23680 6.27733 6.35873 6.40573 6.48027 6.59565 6.77737 6.83868 6.92942 7.12387 7.18281 7.45636 7.85387 7.90564 8.51366 8.97867 9.63940 10.50337 11.33508 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002990 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.512604 B = 9361.619765 C =10345.701365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.592 5.592 4 C 0.521 3.479 5 O -0.554 6.554 6 C -0.101 4.101 7 H 0.101 0.899 8 C -0.121 4.121 9 C -0.115 4.115 10 C 0.039 3.961 11 N -0.531 5.531 12 C 0.012 3.988 13 C 0.220 3.780 14 F -0.202 7.202 15 F -0.195 7.195 16 C 0.055 3.945 17 C 0.070 3.930 18 C 0.158 3.842 19 N -0.606 5.606 20 C -0.225 4.225 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.106 3.894 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 8.610 19.009 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.324 5.324 4 C 0.308 3.692 5 O -0.433 6.433 6 C -0.123 4.123 7 H 0.120 0.880 8 C -0.159 4.159 9 C -0.153 4.153 10 C -0.088 4.088 11 N -0.253 5.253 12 C -0.118 4.118 13 C 0.164 3.836 14 F -0.183 7.183 15 F -0.177 7.177 16 C -0.073 4.073 17 C -0.034 4.034 18 C 0.032 3.968 19 N -0.332 5.332 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.021 4.021 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.136 0.864 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.201 8.373 18.874 20.765 hybrid contribution -0.545 -0.197 -0.703 0.911 sum 1.656 8.177 18.170 19.994 Atomic orbital electron populations 1.22138 0.96008 1.01826 1.02446 1.21346 0.94397 0.82624 1.02606 1.48135 1.63456 1.13715 1.07074 1.20488 0.76991 0.88318 0.83373 1.90642 1.50946 1.70642 1.31034 1.21249 1.01318 0.91730 0.98009 0.88044 1.21788 0.97547 0.94794 1.01756 1.21590 1.02340 0.95620 0.95707 1.22553 0.93891 0.96888 0.95509 1.61970 1.44032 1.03557 1.15789 1.23405 0.94325 1.04684 0.89401 1.23009 0.87481 0.72884 1.00233 1.92943 1.74339 1.63775 1.87284 1.92936 1.84260 1.43179 1.97295 1.22325 1.02532 0.86764 0.95657 1.24398 0.98487 0.98469 0.82003 1.22654 0.90713 0.98523 0.84895 1.45687 1.01925 1.85107 1.00513 1.18940 0.92376 1.43823 0.80064 0.90133 1.24783 0.95241 1.02138 0.98008 1.69794 0.98890 1.55994 1.31982 0.86187 0.77158 0.78009 0.84318 1.21179 1.21532 1.20983 1.23007 0.94849 0.97575 0.86664 0.92131 0.92719 0.91726 0.89875 0.90949 0.89540 0.91780 0.90741 0.90878 0.92783 0.90548 0.87594 0.87493 0.87466 0.90748 0.90379 0.86373 0.94558 0.90519 0.93489 0.93470 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.97 37.16 0.37 -2.11 16 2 C 0.11 1.78 5.14 -4.04 -0.02 1.76 16 3 N -0.59 -9.70 2.70 -167.91 -0.45 -10.15 16 4 C 0.52 8.49 6.93 -10.99 -0.08 8.41 16 5 O -0.55 -10.35 15.64 5.55 0.09 -10.27 16 6 C -0.10 -1.40 1.85 -91.69 -0.17 -1.57 16 7 H 0.10 1.39 7.69 -51.93 -0.40 0.99 16 8 C -0.12 -1.59 4.88 -26.60 -0.13 -1.72 16 9 C -0.11 -1.30 6.10 -26.65 -0.16 -1.46 16 10 C 0.04 0.41 4.13 -3.83 -0.02 0.40 16 11 N -0.53 -5.62 4.86 -234.67 -1.14 -6.76 16 12 C 0.01 0.09 5.94 -3.82 -0.02 0.06 16 13 C 0.22 1.73 5.22 37.16 0.19 1.92 16 14 F -0.20 -1.96 13.99 2.25 0.03 -1.93 16 15 F -0.20 -2.23 13.93 2.25 0.03 -2.20 16 16 C 0.05 0.70 3.48 -3.83 -0.01 0.68 16 17 C 0.07 1.25 3.54 -70.15 -0.25 1.00 16 18 C 0.16 3.48 6.40 -2.98 -0.02 3.46 16 19 N -0.61 -14.76 3.70 -178.11 -0.66 -15.42 16 20 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 21 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 22 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 23 N -0.92 -26.24 11.38 55.49 0.63 -25.61 16 24 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.11 2.09 8.48 -2.98 -0.03 2.06 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.03 7.12 -51.93 -0.37 0.66 16 32 H 0.08 1.36 6.15 -51.93 -0.32 1.04 16 33 H 0.07 1.13 7.59 -51.93 -0.39 0.74 16 34 H 0.09 1.24 5.32 -51.93 -0.28 0.96 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.64 5.79 -51.93 -0.30 0.34 16 39 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.11 0.65 7.99 -51.93 -0.41 0.23 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.07 1.08 5.21 -51.93 -0.27 0.81 16 44 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 45 H 0.12 2.01 4.29 -51.93 -0.22 1.78 16 46 H 0.04 0.82 5.48 -51.93 -0.28 0.53 16 47 H 0.08 1.88 7.15 -51.93 -0.37 1.51 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -31.49 380.11 -9.15 -40.63 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.78 Total: 3.02 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.60 Total: 6.45 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -1.62 Total: -57.95 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.06 Total: -4.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.49 -9.15 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951560559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds