Wall clock time and date at job start Wed Apr 1 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46936 * 2 1 4 4 C 1.34778 * 120.00126 * 82.97981 * 3 2 1 5 5 O 1.21286 * 120.00002 * 3.67526 * 4 3 2 6 6 C 1.50695 * 120.00040 * 183.68016 * 4 3 2 7 7 H 1.08994 * 109.50585 * 305.90167 * 6 4 3 8 8 C 1.53122 * 109.50255 * 65.97934 * 6 4 3 9 9 C 1.53123 * 109.21099 * 177.56242 * 8 6 4 10 10 C 1.53041 * 109.27503 * 302.44130 * 9 8 6 11 11 N 1.46841 * 109.57680 * 59.08180 * 10 9 8 12 12 C 1.46906 * 110.99858 * 174.18928 * 11 10 9 13 13 C 1.52999 * 109.46732 * 54.20313 * 12 11 10 14 14 F 1.39899 * 109.47223 * 295.31088 * 13 12 11 15 15 F 1.39902 * 109.47305 * 55.31235 * 13 12 11 16 16 C 1.46844 * 111.20364 * 298.28904 * 11 10 9 17 17 C 1.46502 * 119.99928 * 262.97798 * 3 2 1 18 18 C 1.53946 * 113.74291 * 29.76516 * 17 3 2 19 19 N 1.47577 * 86.11551 * 222.04634 * 18 17 3 20 20 C 1.36937 * 134.48915 * 204.63324 * 19 18 17 21 21 H 1.08003 * 119.99753 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00225 * 0.02562 * 20 19 18 23 23 N 1.31621 * 119.99531 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46982 * 59.99567 * 24 22 20 26 26 H 1.48488 * 109.47367 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46873 * 299.99888 * 24 22 20 28 28 C 1.47578 * 91.01562 * 24.64181 * 19 18 17 29 29 H 1.09003 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47723 * 300.00097 * 1 2 3 31 31 H 1.09003 * 109.46818 * 60.00351 * 1 2 3 32 32 H 1.09001 * 109.47723 * 239.99903 * 2 1 3 33 33 H 1.09004 * 109.47336 * 119.99606 * 2 1 3 34 34 H 1.09000 * 109.52381 * 297.49735 * 8 6 4 35 35 H 1.09000 * 109.52466 * 57.62860 * 8 6 4 36 36 H 1.09000 * 109.50467 * 62.31983 * 9 8 6 37 37 H 1.09001 * 109.49857 * 182.43815 * 9 8 6 38 38 H 1.09001 * 109.41063 * 299.06550 * 10 9 8 39 39 H 1.08997 * 109.45253 * 179.12846 * 10 9 8 40 40 H 1.09000 * 109.47065 * 174.19863 * 12 11 10 41 41 H 1.08994 * 109.47456 * 294.20226 * 12 11 10 42 42 H 1.09009 * 109.46778 * 175.31282 * 13 12 11 43 43 H 1.09004 * 109.46152 * 301.72954 * 16 11 10 44 44 H 1.08998 * 109.45794 * 181.74989 * 16 11 10 45 45 H 1.09002 * 112.94264 * 161.49741 * 17 3 2 46 46 H 1.09005 * 113.76529 * 336.34935 * 18 17 3 47 47 H 1.08993 * 113.76873 * 107.73925 * 18 17 3 48 48 H 0.97001 * 119.99546 * 180.02562 * 23 22 20 49 49 H 1.09003 * 113.76937 * 221.05852 * 28 19 18 50 50 H 1.09005 * 113.77114 * 89.66196 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1084 2.0642 1.1584 5 8 1.8490 1.5147 2.2081 6 6 2.5313 3.5105 1.1495 7 1 3.4802 3.6090 0.6224 8 6 1.4642 4.3509 0.4425 9 6 1.8711 5.8262 0.4908 10 6 2.0524 6.2529 1.9493 11 7 3.0836 5.4200 2.5811 12 6 3.3813 5.8915 3.9402 13 6 2.0849 5.9668 4.7492 14 9 1.2426 6.9345 4.1914 15 9 1.4464 4.7223 4.7239 16 6 2.6919 4.0048 2.5890 17 6 2.4087 2.0202 -1.2592 18 6 1.6366 1.4982 -2.4846 19 7 2.9341 1.5232 -3.1872 20 6 3.3131 1.6218 -4.4994 21 1 4.3611 1.6164 -4.7606 22 6 2.3504 1.7287 -5.4937 23 7 1.0734 1.7349 -5.1753 24 14 2.8674 1.8639 -7.2837 25 1 3.6463 0.6588 -7.6663 26 1 1.6596 1.9651 -8.1415 27 1 3.7076 3.0748 -7.4661 28 6 3.6591 1.3992 -1.9077 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.3773 4.0307 -0.5958 35 1 0.5059 4.2207 0.9453 36 1 2.8096 5.9627 -0.0467 37 1 1.0938 6.4334 0.0269 38 1 1.1096 6.1303 2.4824 39 1 2.3571 7.2988 1.9863 40 1 4.0707 5.1984 4.4223 41 1 3.8363 6.8807 3.8901 42 1 2.3152 6.2362 5.7801 43 1 1.7461 3.8927 3.1191 44 1 3.4613 3.4180 3.0908 45 1 2.4437 3.1075 -1.1910 46 1 1.2279 0.4964 -2.3522 47 1 0.9090 2.2069 -2.8800 48 1 0.4006 1.8092 -5.8702 49 1 4.5464 2.0289 -1.8427 50 1 3.8446 0.3683 -1.6060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951560559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:15 Heat of formation + Delta-G solvation = -81.441968 kcal Electronic energy + Delta-G solvation = -32872.111183 eV Core-core repulsion = 28378.647858 eV Total energy + Delta-G solvation = -4493.463326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.10802 -48.02563 -41.74708 -39.83863 -38.98565 -36.03325 -35.14698 -33.98183 -32.46644 -31.30769 -29.90396 -29.34294 -26.58141 -25.66272 -25.41629 -25.02336 -23.53534 -23.14326 -21.63822 -21.00536 -19.70142 -18.91758 -18.54443 -18.41390 -18.18950 -17.34468 -17.29704 -16.71857 -16.45929 -16.30321 -15.82107 -15.71279 -15.44097 -15.17589 -14.90637 -14.61637 -14.42389 -14.40110 -14.28959 -14.11666 -13.75511 -13.65971 -13.38417 -13.30182 -13.22806 -13.02708 -12.86113 -12.72493 -12.65775 -12.57315 -12.47541 -12.20061 -12.07307 -12.01416 -11.89313 -11.74789 -11.64559 -11.47878 -11.33338 -10.84833 -10.59620 -9.58971 -9.18951 -8.91863 -7.89578 -5.23263 1.48951 1.51264 1.57426 1.58511 1.94318 2.49829 2.69801 3.06354 3.29531 3.37637 3.44429 3.53775 3.61493 3.74347 3.78022 3.88453 3.90630 3.99808 4.16377 4.20290 4.25148 4.38929 4.40053 4.42007 4.52887 4.54284 4.61036 4.70610 4.74228 4.78481 4.79362 4.85376 4.88167 4.93119 4.97786 4.99186 5.09980 5.14665 5.24608 5.28313 5.37116 5.42311 5.50155 5.63734 5.91989 5.95163 6.00957 6.45913 6.92457 7.16372 7.61113 8.54025 9.26780 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.002990 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.512604 B = 9361.619765 C =10345.701365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.592 5.592 4 C 0.521 3.479 5 O -0.576 6.576 6 C -0.097 4.097 7 H 0.107 0.893 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.043 3.957 11 N -0.535 5.535 12 C 0.010 3.990 13 C 0.210 3.790 14 F -0.214 7.214 15 F -0.219 7.219 16 C 0.064 3.936 17 C 0.103 3.897 18 C 0.160 3.840 19 N -0.633 5.633 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.061 4.061 23 N -0.950 5.950 24 Si 0.977 3.023 25 H -0.280 1.280 26 H -0.296 1.296 27 H -0.274 1.274 28 C 0.109 3.891 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.131 0.869 46 H 0.030 0.970 47 H 0.046 0.954 48 H 0.249 0.751 49 H 0.064 0.936 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 9.773 20.060 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.011 4.011 3 N -0.323 5.323 4 C 0.310 3.690 5 O -0.456 6.456 6 C -0.119 4.119 7 H 0.125 0.875 8 C -0.154 4.154 9 C -0.150 4.150 10 C -0.084 4.084 11 N -0.258 5.258 12 C -0.119 4.119 13 C 0.155 3.845 14 F -0.196 7.196 15 F -0.201 7.201 16 C -0.064 4.064 17 C -0.001 4.001 18 C 0.034 3.966 19 N -0.360 5.360 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.254 4.254 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.200 1.200 28 C -0.018 4.018 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.829 9.539 19.960 22.451 hybrid contribution -1.028 -0.583 -0.942 1.511 sum 2.801 8.956 19.019 21.208 Atomic orbital electron populations 1.22051 0.95380 1.02861 1.01258 1.21394 0.94896 0.82341 1.02485 1.48105 1.63516 1.13986 1.06680 1.20921 0.76204 0.89184 0.82670 1.90631 1.51912 1.71360 1.31663 1.21265 1.01472 0.89927 0.99222 0.87456 1.21714 0.96986 0.96214 1.00446 1.21589 1.02624 0.94136 0.96620 1.22515 0.93548 0.97707 0.94618 1.61959 1.43488 1.02223 1.18093 1.23609 0.94391 1.06330 0.87593 1.23477 0.86866 0.71633 1.02503 1.92917 1.74839 1.64098 1.87702 1.92892 1.84792 1.44903 1.97463 1.22146 1.01601 0.88371 0.94274 1.23906 0.96138 0.98819 0.81230 1.22523 0.89895 0.97578 0.86638 1.45987 1.03650 1.85277 1.01050 1.19324 0.92718 1.42684 0.81557 0.89663 1.25570 0.95330 1.02689 1.01830 1.69979 0.99699 1.57511 1.32599 0.85182 0.76501 0.78240 0.79572 1.20645 1.22212 1.20001 1.23133 0.95774 0.98328 0.84516 0.90086 0.93392 0.93207 0.90455 0.90429 0.90965 0.92802 0.90559 0.90057 0.94024 0.88852 0.86132 0.84979 0.83346 0.92535 0.90593 0.85174 0.95214 0.93574 0.94227 0.91764 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 9.97 71.98 0.72 -3.98 16 2 C 0.11 3.49 5.14 86.38 0.44 3.93 16 3 N -0.59 -19.18 2.70 -803.52 -2.17 -21.35 16 4 C 0.52 16.74 6.93 87.66 0.61 17.34 16 5 O -0.58 -21.31 15.64 -3.05 -0.05 -21.35 16 6 C -0.10 -2.60 1.85 -11.49 -0.02 -2.62 16 7 H 0.11 2.76 7.69 -2.39 -0.02 2.75 16 8 C -0.12 -3.00 4.88 30.68 0.15 -2.85 16 9 C -0.11 -2.38 6.10 30.65 0.19 -2.20 16 10 C 0.04 0.85 4.13 86.33 0.36 1.20 16 11 N -0.53 -10.22 4.86 -896.35 -4.36 -14.57 16 12 C 0.01 0.12 5.94 86.30 0.51 0.63 16 13 C 0.21 2.83 5.22 71.98 0.38 3.21 16 14 F -0.21 -3.78 13.99 44.97 0.63 -3.15 16 15 F -0.22 -4.80 13.93 44.97 0.63 -4.17 16 16 C 0.06 1.56 3.48 86.33 0.30 1.86 16 17 C 0.10 3.64 3.54 46.75 0.17 3.81 16 18 C 0.16 7.17 6.40 86.48 0.55 7.72 16 19 N -0.63 -30.89 3.70 -717.42 -2.65 -33.54 16 20 C -0.23 -12.67 10.70 84.03 0.90 -11.77 16 21 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 23 N -0.95 -55.34 11.38 21.65 0.25 -55.10 16 24 Si 0.98 44.43 29.55 68.60 2.03 46.46 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.11 4.16 8.48 86.48 0.73 4.89 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.62 7.12 -2.39 -0.02 1.61 16 32 H 0.08 2.52 6.15 -2.39 -0.01 2.51 16 33 H 0.08 2.37 7.59 -2.38 -0.02 2.36 16 34 H 0.07 2.06 5.32 -2.39 -0.01 2.05 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 0.94 5.79 -2.39 -0.01 0.92 16 39 H 0.09 1.52 8.09 -2.39 -0.02 1.51 16 40 H 0.12 1.10 7.99 -2.39 -0.02 1.08 16 41 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.15 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.06 1.62 5.21 -2.38 -0.01 1.61 16 44 H 0.08 1.87 8.01 -2.39 -0.02 1.85 16 45 H 0.13 4.34 4.29 -2.39 -0.01 4.33 16 46 H 0.03 1.38 5.48 -2.38 -0.01 1.37 16 47 H 0.05 2.35 7.15 -2.39 -0.02 2.33 16 48 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.04 1.59 7.60 -2.38 -0.02 1.57 16 Total: -1.00 -68.31 380.11 1.70 -66.61 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.95 Total: 21.87 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 6.45 Total: 18.30 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -8.93 Total: -124.56 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 1.26 Total: -7.32 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.31 1.70 -66.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951560559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.836 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds