Wall clock time and date at job start Wed Apr 1 2020 04:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 N 1.46503 * 109.47186 * 119.99329 * 2 1 3 5 5 C 1.34773 * 120.00289 * 274.99992 * 4 2 1 6 6 O 1.21275 * 120.00003 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99945 * 179.97438 * 5 4 2 8 8 H 1.09001 * 110.36400 * 42.35806 * 7 5 4 9 9 C 1.54376 * 110.41373 * 280.00468 * 7 5 4 10 10 C 1.54264 * 105.06041 * 217.36519 * 9 7 5 11 11 C 1.54377 * 105.05951 * 0.02562 * 10 9 7 12 12 N 1.48559 * 104.59648 * 23.84862 * 11 10 9 13 13 C 1.38410 * 110.99929 * 200.95974 * 12 11 10 14 14 N 1.32488 * 119.21336 * 115.15372 * 13 12 11 15 15 C 1.32277 * 120.74086 * 179.71863 * 14 13 12 16 16 C 1.38605 * 119.19207 * 0.54105 * 15 14 13 17 17 C 1.38599 * 118.56141 * 359.73079 * 16 15 14 18 18 N 1.32278 * 119.19618 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.47310 * 239.99899 * 2 1 3 20 20 C 1.53946 * 113.84014 * 326.34918 * 19 2 1 21 21 N 1.47580 * 86.11645 * 90.74977 * 20 19 2 22 22 C 1.36940 * 134.49194 * 204.64076 * 21 20 19 23 23 H 1.08004 * 119.99910 * 180.02562 * 22 21 20 24 24 C 1.38813 * 120.00130 * 0.02562 * 22 21 20 25 25 N 1.31623 * 119.99843 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00040 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47395 * 89.99952 * 26 24 22 28 28 H 1.48496 * 109.47269 * 210.00118 * 26 24 22 29 29 H 1.48507 * 109.47337 * 329.99895 * 26 24 22 30 30 C 1.47585 * 91.01539 * 24.64210 * 21 20 19 31 31 H 1.09005 * 109.47387 * 299.99831 * 1 2 3 32 32 H 1.08996 * 109.47692 * 60.00437 * 1 2 3 33 33 H 1.09007 * 109.46890 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.98988 * 95.00470 * 4 2 1 35 35 H 1.08991 * 110.32798 * 336.26668 * 9 7 5 36 36 H 1.08999 * 110.32359 * 98.47366 * 9 7 5 37 37 H 1.09006 * 110.32222 * 118.89814 * 10 9 7 38 38 H 1.08998 * 110.32516 * 241.00100 * 10 9 7 39 39 H 1.09003 * 110.41276 * 142.62574 * 11 10 9 40 40 H 1.09006 * 110.41008 * 264.94990 * 11 10 9 41 41 H 1.07998 * 120.40616 * 180.29595 * 15 14 13 42 42 H 1.08004 * 120.72068 * 179.75801 * 16 15 14 43 43 H 1.08007 * 120.40808 * 180.02562 * 17 16 15 44 44 H 1.09002 * 112.94549 * 194.66377 * 19 2 1 45 45 H 1.08996 * 113.77105 * 205.05389 * 20 19 2 46 46 H 1.09002 * 113.76556 * 336.45321 * 20 19 2 47 47 H 0.96992 * 119.99795 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.76681 * 221.05446 * 30 21 20 49 49 H 1.08997 * 113.86988 * 89.67359 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0181 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6489 -0.7285 3.5878 8 1 3.4838 -1.3819 3.3346 9 6 1.5104 -1.5391 4.2434 10 6 1.7399 -1.3964 5.7622 11 6 2.9974 -0.5111 5.8964 12 7 3.0529 0.2556 4.6251 13 6 4.3312 0.7300 4.3874 14 7 5.0034 0.2797 3.3382 15 6 6.2248 0.7166 3.0794 16 6 6.8037 1.6475 3.9275 17 6 6.0747 2.0931 5.0188 18 7 4.8558 1.6192 5.2176 19 6 2.0400 -0.7213 -1.2492 20 6 1.1424 -1.8857 -1.7055 21 7 0.4435 -0.8882 -2.5389 22 6 -0.8147 -0.7949 -3.0715 23 1 -1.0874 0.0654 -3.6649 24 6 -1.7395 -1.8058 -2.8488 25 7 -1.4073 -2.8539 -2.1252 26 14 -3.4558 -1.6781 -3.5747 27 1 -3.4709 -2.3012 -4.9226 28 1 -4.4201 -2.3832 -2.6927 29 1 -3.8411 -0.2482 -3.6861 30 6 1.6450 -0.0317 -2.5677 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1526 35 1 0.5416 -1.1237 3.9662 36 1 1.5726 -2.5865 3.9479 37 1 0.8836 -0.9109 6.2305 38 1 1.9129 -2.3739 6.2124 39 1 2.8968 0.1662 6.7445 40 1 3.8878 -1.1298 6.0085 41 1 6.7660 0.3494 2.2199 42 1 7.8010 2.0181 3.7418 43 1 6.4966 2.8185 5.6988 44 1 3.0972 -0.9798 -1.1888 45 1 1.6690 -2.6472 -2.2806 46 1 0.5255 -2.3028 -0.9095 47 1 -2.0536 -3.5601 -1.9692 48 1 1.4294 1.0313 -2.4602 49 1 2.3204 -0.2471 -3.3957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969877449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:09 Heat of formation + Delta-G solvation = 105.390926 kcal Electronic energy + Delta-G solvation = -31169.598629 eV Core-core repulsion = 27134.926172 eV Total energy + Delta-G solvation = -4034.672457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55702 -39.89977 -38.80353 -37.57632 -34.24618 -33.93620 -33.31790 -32.11423 -30.45650 -30.00860 -28.71070 -27.51693 -24.86516 -24.80458 -24.48470 -23.96756 -22.58640 -21.31641 -21.10155 -19.82541 -18.62530 -18.06767 -17.52551 -16.98705 -16.75166 -16.10640 -15.62438 -15.32899 -15.06743 -14.93976 -14.82906 -14.35330 -14.20238 -13.90628 -13.71363 -13.66081 -13.12984 -13.02484 -12.73127 -12.56705 -12.30751 -11.82401 -11.60991 -11.51588 -11.22363 -11.12390 -11.05859 -11.02185 -10.94646 -10.80345 -10.71034 -10.52388 -10.40507 -10.28861 -9.81266 -9.56390 -9.45733 -9.39331 -9.24647 -8.71402 -8.65088 -8.50673 -6.78876 -5.73639 -3.04298 0.72174 0.91271 2.81413 3.03070 3.41089 3.47094 3.47957 3.51788 3.59745 3.85624 4.29213 4.39078 4.49134 4.51021 4.59855 4.74084 4.88923 4.90734 4.95216 5.08697 5.21944 5.28881 5.36018 5.40812 5.44792 5.45755 5.55196 5.62512 5.64935 5.78136 5.89086 5.94476 6.00500 6.16597 6.24120 6.34933 6.48816 6.51747 6.57605 6.69017 6.81255 6.84881 7.01576 7.10924 7.30302 7.33832 7.52363 7.66312 7.91426 7.98256 8.02367 8.66356 9.08876 9.74838 10.64731 11.43214 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002758 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.332862 B =10148.575426 C =11126.384076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.177 3.823 3 H 0.072 0.928 4 N -0.716 5.716 5 C 0.532 3.468 6 O -0.530 6.530 7 C 0.057 3.943 8 H 0.100 0.900 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.054 3.946 12 N -0.417 5.417 13 C 0.493 3.507 14 N -0.549 5.549 15 C 0.174 3.826 16 C -0.262 4.262 17 C 0.170 3.830 18 N -0.524 5.524 19 C -0.153 4.153 20 C 0.165 3.835 21 N -0.605 5.605 22 C -0.217 4.217 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.920 5.920 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.126 3.874 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.397 0.603 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.168 0.832 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.064 0.936 45 H 0.022 0.978 46 H 0.079 0.921 47 H 0.252 0.748 48 H 0.044 0.956 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.091 2.141 17.011 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 H 0.090 0.910 4 N -0.367 5.367 5 C 0.316 3.684 6 O -0.406 6.406 7 C -0.055 4.055 8 H 0.117 0.883 9 C -0.156 4.156 10 C -0.160 4.160 11 C -0.072 4.072 12 N -0.137 5.137 13 C 0.137 3.863 14 N -0.268 5.268 15 C 0.007 3.993 16 C -0.285 4.285 17 C 0.002 3.998 18 N -0.241 5.241 19 C -0.173 4.173 20 C 0.039 3.961 21 N -0.331 5.331 22 C -0.345 4.345 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.567 5.567 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.001 4.001 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.185 0.815 42 H 0.164 0.836 43 H 0.186 0.814 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.192 3.014 17.191 23.139 hybrid contribution 0.675 -0.607 -0.998 1.349 sum 15.867 2.407 16.193 22.799 Atomic orbital electron populations 1.22136 0.93304 1.04026 1.01009 1.20561 0.95404 0.95117 0.81586 0.91001 1.46053 1.67053 1.13886 1.09661 1.19807 0.77769 0.87167 0.83673 1.90688 1.49528 1.15820 1.84544 1.22625 0.99205 0.92458 0.91169 0.88254 1.22342 0.98450 1.00135 0.94713 1.22352 0.97687 0.99754 0.96252 1.23123 0.98215 0.95315 0.90571 1.61575 1.15677 1.32140 1.04263 1.21158 0.88859 0.89431 0.86806 1.68349 1.09136 1.28308 1.21030 1.23080 0.89512 0.90220 0.96483 1.22741 1.03720 1.03243 0.98845 1.23112 0.88298 0.94147 0.94197 1.68023 1.13065 1.11567 1.31475 1.23494 0.98338 1.00797 0.94641 1.22350 0.89903 0.90181 0.93631 1.45998 1.06652 1.20108 1.60380 1.18969 0.85675 1.03795 1.26044 0.90492 1.24693 0.98094 0.96642 1.00746 1.69794 1.34184 1.09854 1.42894 0.86206 0.84397 0.77378 0.78324 1.21834 1.21729 1.20698 1.22528 0.89114 0.95466 0.92998 0.95310 0.89843 0.90667 0.77015 0.89728 0.89443 0.89956 0.90134 0.88244 0.92925 0.81477 0.83583 0.81364 0.91802 0.95977 0.90246 0.93823 0.93798 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.21 37.16 0.30 -2.81 16 2 C 0.18 3.27 2.69 -67.93 -0.18 3.09 16 3 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.72 -11.37 5.08 -53.81 -0.27 -11.64 16 5 C 0.53 8.92 6.47 -10.99 -0.07 8.85 16 6 O -0.53 -11.24 16.21 5.56 0.09 -11.15 16 7 C 0.06 0.75 2.24 -67.21 -0.15 0.60 16 8 H 0.10 1.20 7.11 -51.93 -0.37 0.83 16 9 C -0.12 -1.25 6.54 -25.35 -0.17 -1.41 16 10 C -0.12 -1.04 7.00 -25.35 -0.18 -1.22 16 11 C 0.05 0.54 6.28 -2.18 -0.01 0.53 16 12 N -0.42 -5.81 4.73 -164.82 -0.78 -6.59 16 13 C 0.49 6.95 6.77 -322.82 -2.19 4.76 16 14 N -0.55 -7.20 8.15 -13.93 -0.11 -7.31 16 15 C 0.17 1.70 11.30 -17.22 -0.19 1.51 16 16 C -0.26 -2.08 10.16 -39.31 -0.40 -2.48 16 17 C 0.17 1.58 11.30 -17.23 -0.19 1.38 16 18 N -0.52 -6.82 10.26 -13.93 -0.14 -6.96 16 19 C -0.15 -2.80 4.07 -89.69 -0.36 -3.16 16 20 C 0.16 3.65 6.52 -2.97 -0.02 3.63 16 21 N -0.60 -14.78 2.18 -177.91 -0.39 -15.16 16 22 C -0.22 -5.90 9.81 -15.06 -0.15 -6.05 16 23 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 25 N -0.92 -26.15 11.38 55.49 0.63 -25.52 16 26 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.13 2.54 8.13 -2.97 -0.02 2.51 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.96 6.15 -51.93 -0.32 1.64 16 33 H 0.07 1.76 6.19 -51.93 -0.32 1.44 16 34 H 0.40 5.40 8.60 -40.82 -0.35 5.04 16 35 H 0.08 1.04 7.85 -51.93 -0.41 0.64 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.48 7.97 -51.93 -0.41 0.07 16 41 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 1.91 5.49 -51.93 -0.28 1.62 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -35.19 392.36 -11.65 -46.84 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.48 Total: 5.09 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -4.08 Total: 9.49 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.07 Total: -73.19 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.19 -11.65 -46.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969877449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.233 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds