Wall clock time and date at job start Wed Apr 1 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 N 1.46503 * 109.47186 * 119.99329 * 2 1 3 5 5 C 1.34773 * 120.00289 * 274.99992 * 4 2 1 6 6 O 1.21275 * 120.00003 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99945 * 179.97438 * 5 4 2 8 8 H 1.09001 * 110.36400 * 42.35806 * 7 5 4 9 9 C 1.54376 * 110.41373 * 280.00468 * 7 5 4 10 10 C 1.54264 * 105.06041 * 217.36519 * 9 7 5 11 11 C 1.54377 * 105.05951 * 0.02562 * 10 9 7 12 12 N 1.48559 * 104.59648 * 23.84862 * 11 10 9 13 13 C 1.38410 * 110.99929 * 200.95974 * 12 11 10 14 14 N 1.32488 * 119.21336 * 115.15372 * 13 12 11 15 15 C 1.32277 * 120.74086 * 179.71863 * 14 13 12 16 16 C 1.38605 * 119.19207 * 0.54105 * 15 14 13 17 17 C 1.38599 * 118.56141 * 359.73079 * 16 15 14 18 18 N 1.32278 * 119.19618 * 0.02562 * 17 16 15 19 19 C 1.52999 * 109.47310 * 239.99899 * 2 1 3 20 20 C 1.53946 * 113.84014 * 326.34918 * 19 2 1 21 21 N 1.47580 * 86.11645 * 90.74977 * 20 19 2 22 22 C 1.36940 * 134.49194 * 204.64076 * 21 20 19 23 23 H 1.08004 * 119.99910 * 180.02562 * 22 21 20 24 24 C 1.38813 * 120.00130 * 0.02562 * 22 21 20 25 25 N 1.31623 * 119.99843 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00040 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47395 * 89.99952 * 26 24 22 28 28 H 1.48496 * 109.47269 * 210.00118 * 26 24 22 29 29 H 1.48507 * 109.47337 * 329.99895 * 26 24 22 30 30 C 1.47585 * 91.01539 * 24.64210 * 21 20 19 31 31 H 1.09005 * 109.47387 * 299.99831 * 1 2 3 32 32 H 1.08996 * 109.47692 * 60.00437 * 1 2 3 33 33 H 1.09007 * 109.46890 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.98988 * 95.00470 * 4 2 1 35 35 H 1.08991 * 110.32798 * 336.26668 * 9 7 5 36 36 H 1.08999 * 110.32359 * 98.47366 * 9 7 5 37 37 H 1.09006 * 110.32222 * 118.89814 * 10 9 7 38 38 H 1.08998 * 110.32516 * 241.00100 * 10 9 7 39 39 H 1.09003 * 110.41276 * 142.62574 * 11 10 9 40 40 H 1.09006 * 110.41008 * 264.94990 * 11 10 9 41 41 H 1.07998 * 120.40616 * 180.29595 * 15 14 13 42 42 H 1.08004 * 120.72068 * 179.75801 * 16 15 14 43 43 H 1.08007 * 120.40808 * 180.02562 * 17 16 15 44 44 H 1.09002 * 112.94549 * 194.66377 * 19 2 1 45 45 H 1.08996 * 113.77105 * 205.05389 * 20 19 2 46 46 H 1.09002 * 113.76556 * 336.45321 * 20 19 2 47 47 H 0.96992 * 119.99795 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.76681 * 221.05446 * 30 21 20 49 49 H 1.08997 * 113.86988 * 89.67359 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0181 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6489 -0.7285 3.5878 8 1 3.4838 -1.3819 3.3346 9 6 1.5104 -1.5391 4.2434 10 6 1.7399 -1.3964 5.7622 11 6 2.9974 -0.5111 5.8964 12 7 3.0529 0.2556 4.6251 13 6 4.3312 0.7300 4.3874 14 7 5.0034 0.2797 3.3382 15 6 6.2248 0.7166 3.0794 16 6 6.8037 1.6475 3.9275 17 6 6.0747 2.0931 5.0188 18 7 4.8558 1.6192 5.2176 19 6 2.0400 -0.7213 -1.2492 20 6 1.1424 -1.8857 -1.7055 21 7 0.4435 -0.8882 -2.5389 22 6 -0.8147 -0.7949 -3.0715 23 1 -1.0874 0.0654 -3.6649 24 6 -1.7395 -1.8058 -2.8488 25 7 -1.4073 -2.8539 -2.1252 26 14 -3.4558 -1.6781 -3.5747 27 1 -3.4709 -2.3012 -4.9226 28 1 -4.4201 -2.3832 -2.6927 29 1 -3.8411 -0.2482 -3.6861 30 6 1.6450 -0.0317 -2.5677 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1526 35 1 0.5416 -1.1237 3.9662 36 1 1.5726 -2.5865 3.9479 37 1 0.8836 -0.9109 6.2305 38 1 1.9129 -2.3739 6.2124 39 1 2.8968 0.1662 6.7445 40 1 3.8878 -1.1298 6.0085 41 1 6.7660 0.3494 2.2199 42 1 7.8010 2.0181 3.7418 43 1 6.4966 2.8185 5.6988 44 1 3.0972 -0.9798 -1.1888 45 1 1.6690 -2.6472 -2.2806 46 1 0.5255 -2.3028 -0.9095 47 1 -2.0536 -3.5601 -1.9692 48 1 1.4294 1.0313 -2.4602 49 1 2.3204 -0.2471 -3.3957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969877449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:08 Heat of formation + Delta-G solvation = 82.676250 kcal Electronic energy + Delta-G solvation = -31170.583612 eV Core-core repulsion = 27134.926172 eV Total energy + Delta-G solvation = -4035.657439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39639 -41.16090 -40.17604 -38.83545 -35.80201 -34.72138 -34.18572 -33.99448 -31.81084 -30.77089 -29.97968 -29.39347 -26.60005 -25.96384 -25.53486 -25.11645 -23.85260 -22.61008 -22.07388 -21.09847 -20.07649 -18.97033 -18.72044 -18.50483 -18.03686 -17.10420 -16.83167 -16.68992 -16.52869 -15.97456 -15.96545 -15.66084 -15.51017 -15.40482 -14.84488 -14.48056 -14.41077 -14.29893 -13.93414 -13.76690 -13.55538 -13.42120 -13.02105 -12.90451 -12.80205 -12.60476 -12.52303 -12.38900 -12.34749 -12.04405 -11.94048 -11.87937 -11.68578 -11.62690 -11.37571 -11.18229 -11.08409 -10.79569 -10.61989 -10.19409 -9.99246 -9.49036 -8.75861 -7.82630 -5.12226 -0.01870 0.19807 1.46626 1.47489 1.54912 1.68966 1.91505 2.45258 2.51539 2.76237 3.10447 3.37550 3.44626 3.50551 3.64557 3.75360 3.79532 3.81851 3.93912 3.98855 4.10652 4.14080 4.29184 4.38004 4.39683 4.41928 4.56011 4.60764 4.69507 4.75955 4.79086 4.87241 4.87833 4.94651 5.03301 5.04781 5.11238 5.11893 5.15524 5.29286 5.32257 5.44415 5.55440 5.59620 5.70730 5.72267 5.78305 6.03848 6.25546 6.67213 7.02122 7.13861 7.35893 7.69589 8.65943 9.33406 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.002758 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.332862 B =10148.575426 C =11126.384076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.188 3.812 3 H 0.063 0.937 4 N -0.706 5.706 5 C 0.532 3.468 6 O -0.579 6.579 7 C 0.066 3.934 8 H 0.112 0.888 9 C -0.117 4.117 10 C -0.113 4.113 11 C 0.055 3.945 12 N -0.445 5.445 13 C 0.468 3.532 14 N -0.573 5.573 15 C 0.156 3.844 16 C -0.244 4.244 17 C 0.157 3.843 18 N -0.553 5.553 19 C -0.122 4.122 20 C 0.166 3.834 21 N -0.630 5.630 22 C -0.222 4.222 23 H 0.074 0.926 24 C -0.056 4.056 25 N -0.942 5.942 26 Si 0.962 3.038 27 H -0.290 1.290 28 H -0.296 1.296 29 H -0.276 1.276 30 C 0.123 3.877 31 H 0.019 0.981 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.202 0.798 44 H 0.101 0.899 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.246 0.754 48 H 0.047 0.953 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.527 1.962 17.637 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.081 0.919 4 N -0.357 5.357 5 C 0.318 3.682 6 O -0.458 6.458 7 C -0.046 4.046 8 H 0.130 0.870 9 C -0.156 4.156 10 C -0.151 4.151 11 C -0.070 4.070 12 N -0.165 5.165 13 C 0.112 3.888 14 N -0.293 5.293 15 C -0.010 4.010 16 C -0.267 4.267 17 C -0.009 4.009 18 N -0.271 5.271 19 C -0.142 4.142 20 C 0.041 3.959 21 N -0.357 5.357 22 C -0.351 4.351 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.592 5.592 26 Si 0.792 3.208 27 H -0.217 1.217 28 H -0.223 1.223 29 H -0.201 1.201 30 C -0.002 4.002 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.212 0.788 42 H 0.204 0.796 43 H 0.219 0.781 44 H 0.119 0.881 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.679 2.829 17.815 25.257 hybrid contribution 0.032 -0.438 -1.199 1.277 sum 17.711 2.391 16.616 24.403 Atomic orbital electron populations 1.21879 0.95550 1.01809 0.99253 1.20242 0.93309 0.95117 0.82972 0.91874 1.45885 1.66494 1.14448 1.08865 1.20500 0.76473 0.86640 0.84550 1.90658 1.51680 1.18101 1.85334 1.22560 1.00156 0.92242 0.89617 0.86997 1.22406 0.96228 1.00863 0.96104 1.22366 0.96953 1.01040 0.94738 1.23187 0.99238 0.95314 0.89251 1.61608 1.16554 1.32984 1.05403 1.21293 0.89323 0.90456 0.87775 1.68315 1.10589 1.29374 1.21022 1.23714 0.88880 0.90694 0.97715 1.23150 1.04892 1.01448 0.97202 1.23807 0.87408 0.94371 0.95316 1.68019 1.14881 1.12096 1.32147 1.23211 0.99498 0.98044 0.93417 1.22275 0.90074 0.90826 0.92765 1.46277 1.07098 1.21699 1.60603 1.19214 0.87262 1.03417 1.25201 0.90820 1.25330 1.01073 0.96832 1.01770 1.69938 1.34733 1.10294 1.44198 0.85324 0.80811 0.77340 0.77352 1.21709 1.22268 1.20103 1.22727 0.87725 0.95299 0.94478 0.96200 0.92313 0.92925 0.75383 0.92101 0.86936 0.90037 0.87070 0.88431 0.92027 0.78760 0.79649 0.78109 0.88102 0.96413 0.92435 0.94514 0.93475 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.21 71.98 0.59 -4.95 16 2 C 0.19 6.91 2.69 44.99 0.12 7.03 16 3 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 4 N -0.71 -22.03 5.08 -442.54 -2.25 -24.28 16 5 C 0.53 17.89 6.47 87.66 0.57 18.45 16 6 O -0.58 -25.14 16.21 -3.02 -0.05 -25.19 16 7 C 0.07 1.68 2.24 44.31 0.10 1.78 16 8 H 0.11 2.55 7.11 -2.39 -0.02 2.54 16 9 C -0.12 -2.38 6.54 31.49 0.21 -2.17 16 10 C -0.11 -1.75 7.00 31.49 0.22 -1.53 16 11 C 0.06 1.07 6.28 86.45 0.54 1.62 16 12 N -0.44 -12.34 4.73 -675.37 -3.20 -15.53 16 13 C 0.47 12.97 6.77 261.49 1.77 14.74 16 14 N -0.57 -14.38 8.15 -197.99 -1.61 -15.99 16 15 C 0.16 2.70 11.30 84.71 0.96 3.66 16 16 C -0.24 -3.15 10.16 22.44 0.23 -2.92 16 17 C 0.16 2.60 11.30 84.71 0.96 3.56 16 18 N -0.55 -14.04 10.26 -197.99 -2.03 -16.08 16 19 C -0.12 -4.28 4.07 -10.13 -0.04 -4.32 16 20 C 0.17 7.29 6.52 86.48 0.56 7.85 16 21 N -0.63 -30.78 2.18 -716.78 -1.56 -32.34 16 22 C -0.22 -12.19 9.81 84.03 0.82 -11.37 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 25 N -0.94 -54.56 11.38 21.65 0.25 -54.31 16 26 Si 0.96 45.91 29.55 68.60 2.03 47.94 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 29 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 30 C 0.12 4.81 8.13 86.48 0.70 5.51 16 31 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 2.84 6.15 -2.39 -0.01 2.82 16 33 H 0.05 2.54 6.19 -2.38 -0.01 2.52 16 34 H 0.41 10.63 8.60 -92.71 -0.80 9.84 16 35 H 0.06 1.52 7.85 -2.39 -0.02 1.50 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.06 7.97 -2.38 -0.02 1.04 16 41 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 2.80 5.49 -2.39 -0.01 2.79 16 47 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 48 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 49 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -79.42 392.36 0.52 -78.90 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.17 Total: 22.63 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: 8.78 Total: 34.26 kcal Atomic # 7 Polarization: -148.13 SS G_CDS: -10.40 Total: -158.54 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.42 0.52 -78.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969877449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.572 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds