Wall clock time and date at job start Wed Apr 1 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47583 * 2 1 4 4 N 1.46503 * 109.46887 * 120.00198 * 2 1 3 5 5 C 1.34782 * 119.99822 * 274.99463 * 4 2 1 6 6 O 1.21281 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99933 * 179.97438 * 5 4 2 8 8 C 1.53124 * 109.52504 * 299.68710 * 7 5 4 9 9 C 1.53032 * 109.27816 * 182.44270 * 8 7 5 10 10 N 1.46846 * 109.52775 * 59.17738 * 9 8 7 11 11 C 1.46898 * 111.00044 * 174.16277 * 10 9 8 12 12 C 1.52996 * 109.47324 * 46.82716 * 11 10 9 13 13 F 1.39897 * 109.47131 * 292.90430 * 12 11 10 14 14 F 1.39897 * 109.47300 * 52.90865 * 12 11 10 15 15 C 1.46846 * 111.19681 * 298.26102 * 10 9 8 16 16 C 1.53031 * 109.52483 * 61.73799 * 15 10 9 17 17 C 1.53001 * 109.47130 * 239.99626 * 2 1 3 18 18 C 1.53496 * 114.20430 * 60.00542 * 17 2 1 19 19 N 1.47065 * 87.98641 * 87.51662 * 18 17 2 20 20 C 1.36941 * 136.06042 * 207.08078 * 19 18 17 21 21 H 1.08003 * 119.99785 * 4.36690 * 20 19 18 22 22 C 1.38814 * 120.00297 * 184.36472 * 20 19 18 23 23 N 1.31619 * 120.00019 * 172.82692 * 22 20 19 24 24 Si 1.86797 * 119.99808 * 352.83008 * 22 20 19 25 25 H 1.48500 * 109.46989 * 174.43328 * 24 22 20 26 26 H 1.48507 * 109.47176 * 294.42763 * 24 22 20 27 27 H 1.48501 * 109.47691 * 54.42690 * 24 22 20 28 28 C 1.47068 * 87.88442 * 27.34462 * 19 18 17 29 29 H 1.08997 * 109.47220 * 300.00165 * 1 2 3 30 30 H 1.09007 * 109.47088 * 60.00001 * 1 2 3 31 31 H 1.08993 * 109.47590 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00323 * 95.00273 * 4 2 1 33 33 H 1.09001 * 109.52589 * 59.87596 * 7 5 4 34 34 H 1.08998 * 109.50232 * 302.38432 * 8 7 5 35 35 H 1.09002 * 109.50407 * 62.49866 * 8 7 5 36 36 H 1.09010 * 109.46128 * 299.16074 * 9 8 7 37 37 H 1.09002 * 109.45720 * 179.19257 * 9 8 7 38 38 H 1.09002 * 109.47274 * 166.83135 * 11 10 9 39 39 H 1.09007 * 109.47046 * 286.82477 * 11 10 9 40 40 H 1.09006 * 109.47282 * 172.90503 * 12 11 10 41 41 H 1.09005 * 109.46155 * 301.71767 * 15 10 9 42 42 H 1.09000 * 109.45260 * 181.75546 * 15 10 9 43 43 H 1.08996 * 109.50388 * 180.87951 * 16 15 10 44 44 H 1.08998 * 109.50469 * 60.76362 * 16 15 10 45 45 H 1.08996 * 113.41750 * 286.80498 * 17 2 1 46 46 H 1.08998 * 113.46786 * 332.73513 * 18 17 2 47 47 H 1.09003 * 113.52342 * 202.30457 * 18 17 2 48 48 H 0.97000 * 119.99951 * 354.84236 * 23 22 20 49 49 H 1.08998 * 113.46920 * 87.43695 * 28 19 18 50 50 H 1.09006 * 113.46719 * 217.87787 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1584 2.4117 7 6 2.6487 -0.7288 3.5877 8 6 1.6998 -1.8787 3.9374 9 6 2.1807 -2.5577 5.2217 10 7 2.2124 -1.5763 6.3136 11 6 2.5363 -2.2221 7.5926 12 6 3.7335 -3.1559 7.4038 13 9 3.3656 -4.2250 6.5799 14 9 4.7860 -2.4506 6.8106 15 6 3.1526 -0.4869 6.0211 16 6 2.7008 0.2540 4.7607 17 6 2.0399 -0.7213 -1.2492 18 6 1.5898 -0.0847 -2.5714 19 7 2.7723 0.7864 -2.4945 20 6 3.1106 2.0323 -2.9511 21 1 2.3773 2.6369 -3.4640 22 6 4.3960 2.5182 -2.7547 23 7 4.7637 3.6517 -3.3136 24 14 5.6039 1.5633 -1.6971 25 1 6.9361 2.2168 -1.7544 26 1 5.1229 1.5423 -0.2922 27 1 5.7130 0.1716 -2.2037 28 6 3.4341 -0.2723 -1.7171 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 1.1526 33 1 3.6469 -1.1238 3.3988 34 1 0.6937 -1.4873 4.0874 35 1 1.6913 -2.6037 3.1235 36 1 3.1815 -2.9610 5.0666 37 1 1.4991 -3.3678 5.4812 38 1 2.7828 -1.4603 8.3322 39 1 1.6771 -2.7979 7.9368 40 1 4.0530 -3.5377 8.3735 41 1 4.1489 -0.8998 5.8623 42 1 3.1769 0.2070 6.8614 43 1 3.4074 1.0527 4.5351 44 1 1.7104 0.6790 4.9236 45 1 1.9117 -1.8029 -1.2076 46 1 0.6466 0.4561 -2.4938 47 1 1.6124 -0.7735 -3.4158 48 1 4.1631 4.1094 -3.9224 49 1 3.9432 -1.0113 -2.3358 50 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970331607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:25 Heat of formation + Delta-G solvation = -99.577177 kcal Electronic energy + Delta-G solvation = -32018.549866 eV Core-core repulsion = 27524.300139 eV Total energy + Delta-G solvation = -4494.249727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.06819 -47.96428 -41.49723 -40.43382 -39.18825 -36.21061 -35.03670 -34.51651 -32.12514 -31.58636 -30.01756 -29.58791 -27.12170 -26.07847 -25.16435 -24.18530 -23.51727 -22.88285 -21.65224 -20.98529 -20.43593 -19.47847 -18.58824 -18.31317 -18.12010 -17.74594 -17.39141 -17.02515 -16.36455 -16.23484 -15.89133 -15.83939 -15.51228 -15.28507 -15.18863 -14.97495 -14.64437 -14.47465 -14.32517 -14.22595 -14.09025 -13.53334 -13.41539 -13.37876 -13.28266 -13.14142 -12.83985 -12.75954 -12.63377 -12.53934 -12.26207 -12.22040 -12.09328 -11.99878 -11.73576 -11.62964 -11.41949 -11.32912 -11.04584 -10.90046 -10.66622 -10.07992 -9.21579 -9.20559 -8.64331 -5.46854 1.29460 1.41824 1.60238 1.65690 2.16400 2.49350 2.70272 3.00732 3.07811 3.19596 3.41346 3.44963 3.59714 3.63768 3.76998 3.79108 3.84478 3.92165 4.21527 4.24865 4.33361 4.38782 4.43327 4.46971 4.52953 4.56870 4.59947 4.66504 4.69719 4.73196 4.75181 4.76758 4.78772 4.85383 4.91043 4.93639 5.05130 5.14079 5.17879 5.18201 5.27030 5.32949 5.40688 5.61967 5.94080 5.99979 6.01597 6.61333 6.69138 7.32004 7.32788 8.27056 8.88758 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.002704 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.118301 B =10353.062737 C =10959.730865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 H 0.038 0.962 4 N -0.708 5.708 5 C 0.511 3.489 6 O -0.589 6.589 7 C -0.101 4.101 8 C -0.099 4.099 9 C 0.051 3.949 10 N -0.542 5.542 11 C 0.009 3.991 12 C 0.215 3.785 13 F -0.214 7.214 14 F -0.219 7.219 15 C 0.047 3.953 16 C -0.095 4.095 17 C -0.107 4.107 18 C 0.126 3.874 19 N -0.665 5.665 20 C -0.282 4.282 21 H 0.049 0.951 22 C -0.090 4.090 23 N -0.976 5.976 24 Si 1.110 2.890 25 H -0.306 1.306 26 H -0.294 1.294 27 H -0.248 1.248 28 C 0.093 3.907 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.416 0.584 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.138 0.862 46 H 0.050 0.950 47 H 0.067 0.933 48 H 0.246 0.754 49 H 0.066 0.934 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -23.922 26.324 36.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 H 0.056 0.944 4 N -0.360 5.360 5 C 0.299 3.701 6 O -0.469 6.469 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.076 4.076 10 N -0.266 5.266 11 C -0.120 4.120 12 C 0.160 3.840 13 F -0.195 7.195 14 F -0.200 7.200 15 C -0.080 4.080 16 C -0.133 4.133 17 C -0.127 4.127 18 C 0.001 3.999 19 N -0.394 5.394 20 C -0.410 4.410 21 H 0.067 0.933 22 C -0.281 4.281 23 N -0.622 5.622 24 Si 0.938 3.062 25 H -0.235 1.235 26 H -0.223 1.223 27 H -0.173 1.173 28 C -0.032 4.032 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.254 0.746 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.155 0.845 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.778 -22.635 26.887 35.618 hybrid contribution -0.448 0.507 -1.645 1.779 sum -6.226 -22.128 25.242 34.140 Atomic orbital electron populations 1.21992 0.93528 1.03460 1.01376 1.20376 0.94836 0.95387 0.83213 0.94362 1.45927 1.66852 1.14580 1.08672 1.21258 0.76578 0.86734 0.85569 1.90705 1.51894 1.18508 1.85827 1.21411 1.01709 0.97553 0.91560 1.21591 0.98217 0.95572 0.98323 1.22438 1.01135 0.93912 0.90125 1.62019 1.50448 1.11287 1.02804 1.23604 0.96516 0.98368 0.93536 1.23333 0.86662 0.82508 0.91518 1.92948 1.92019 1.58598 1.75966 1.92891 1.60833 1.79566 1.86753 1.22394 0.94700 0.93453 0.97498 1.21330 1.02033 0.96788 0.93190 1.23030 0.95195 1.01154 0.93277 1.22653 0.90775 0.91299 0.95175 1.46159 1.16211 1.12401 1.64656 1.20014 0.96833 0.91203 1.32982 0.93288 1.26925 0.98344 0.99307 1.03533 1.71000 1.38744 1.19098 1.33348 0.83239 0.73298 0.75343 0.74307 1.23450 1.22265 1.17276 1.23079 0.96223 0.90179 0.93682 0.94084 0.92029 0.89076 0.74595 0.87708 0.91501 0.88567 0.93554 0.88677 0.86114 0.85673 0.83643 0.92476 0.89443 0.92642 0.92183 0.84479 0.93186 0.91525 0.94527 0.91619 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.29 71.98 0.67 -3.28 16 2 C 0.17 5.36 2.43 44.99 0.11 5.47 16 3 H 0.04 1.75 7.36 -2.39 -0.02 1.73 16 4 N -0.71 -18.24 4.98 -442.54 -2.21 -20.45 16 5 C 0.51 15.49 7.12 87.65 0.62 16.12 16 6 O -0.59 -24.60 15.64 -3.03 -0.05 -24.64 16 7 C -0.10 -2.19 2.59 -11.46 -0.03 -2.22 16 8 C -0.10 -1.53 5.26 30.65 0.16 -1.37 16 9 C 0.05 0.69 3.94 86.32 0.34 1.03 16 10 N -0.54 -7.44 4.86 -896.37 -4.35 -11.80 16 11 C 0.01 0.06 6.01 86.30 0.52 0.58 16 12 C 0.21 1.65 5.13 71.98 0.37 2.02 16 13 F -0.21 -2.54 14.02 44.97 0.63 -1.91 16 14 F -0.22 -3.11 13.78 44.97 0.62 -2.49 16 15 C 0.05 0.79 5.04 86.32 0.43 1.22 16 16 C -0.09 -2.21 4.68 30.64 0.14 -2.07 16 17 C -0.11 -3.14 3.73 -10.37 -0.04 -3.18 16 18 C 0.13 4.53 8.08 83.18 0.67 5.20 16 19 N -0.66 -32.72 3.50 -737.92 -2.58 -35.30 16 20 C -0.28 -17.27 11.08 84.03 0.93 -16.34 16 21 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 22 C -0.09 -5.71 5.50 84.86 0.47 -5.24 16 23 N -0.98 -66.70 13.70 21.65 0.30 -66.40 16 24 Si 1.11 57.78 25.10 68.60 1.72 59.50 16 25 H -0.31 -16.25 7.11 99.48 0.71 -15.55 16 26 H -0.29 -15.15 6.74 99.48 0.67 -14.48 16 27 H -0.25 -11.12 6.09 99.48 0.61 -10.51 16 28 C 0.09 3.67 5.27 83.27 0.44 4.11 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.76 6.50 -2.38 -0.02 1.74 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.42 7.03 8.09 -92.71 -0.75 6.28 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.04 7.67 -2.39 -0.02 1.02 16 36 H 0.05 0.70 5.69 -2.38 -0.01 0.68 16 37 H 0.09 1.08 7.74 -2.39 -0.02 1.06 16 38 H 0.12 0.45 7.84 -2.39 -0.02 0.43 16 39 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.15 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.06 1.01 5.57 -2.38 -0.01 0.99 16 42 H 0.09 1.28 7.95 -2.39 -0.02 1.26 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 45 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.05 1.79 6.43 -2.39 -0.02 1.77 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.25 16.80 8.73 -92.71 -0.81 15.99 16 49 H 0.07 2.37 7.80 -2.39 -0.02 2.36 16 50 H 0.03 1.38 4.50 -2.38 -0.01 1.37 16 Total: -1.00 -87.66 381.91 -0.08 -87.74 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.03 Total: 13.69 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.81 Total: 2.05 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -8.84 Total: -133.94 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.25 Total: -4.40 kcal Atomic # 14 Polarization: 57.78 SS G_CDS: 1.72 Total: 59.50 kcal Total: -87.66 -0.08 -87.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970331607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.836 kcal (2) G-P(sol) polarization free energy of solvation -87.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds