Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47412 * 2 1 4 4 N 1.46501 * 109.47273 * 240.00273 * 2 1 3 5 5 C 1.34770 * 119.99882 * 84.99933 * 4 2 1 6 6 O 1.21282 * 120.00310 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99947 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.49822 * 299.92147 * 7 5 4 9 9 C 1.53118 * 109.50038 * 60.00295 * 7 5 4 10 10 C 1.53117 * 109.15937 * 177.59832 * 9 7 5 11 11 C 1.53043 * 109.27695 * 302.34046 * 10 9 7 12 12 N 1.46848 * 109.51929 * 59.18044 * 11 10 9 13 13 C 1.46904 * 110.99825 * 174.15835 * 12 11 10 14 14 C 1.53001 * 109.46790 * 76.14428 * 13 12 11 15 15 F 1.39898 * 109.47565 * 305.99183 * 14 13 12 16 16 F 1.39908 * 109.46839 * 65.98780 * 14 13 12 17 17 C 1.46842 * 111.19957 * 298.25792 * 12 11 10 18 18 C 1.53003 * 109.47457 * 120.00001 * 2 1 3 19 19 C 1.53500 * 114.20470 * 300.00502 * 18 2 1 20 20 N 1.47073 * 87.98192 * 220.33637 * 19 18 2 21 21 C 1.36933 * 136.05728 * 207.07672 * 20 19 18 22 22 H 1.07996 * 120.00349 * 352.86973 * 21 20 19 23 23 C 1.38815 * 119.99850 * 172.86422 * 21 20 19 24 24 N 1.31618 * 119.99963 * 178.13042 * 23 21 20 25 25 Si 1.86807 * 120.00021 * 358.12939 * 23 21 20 26 26 H 1.48496 * 109.46925 * 176.57874 * 25 23 21 27 27 H 1.48498 * 109.46857 * 296.57985 * 25 23 21 28 28 H 1.48504 * 109.46747 * 56.57832 * 25 23 21 29 29 C 1.47074 * 87.88304 * 27.34272 * 20 19 18 30 30 H 1.08996 * 109.46927 * 59.99430 * 1 2 3 31 31 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46773 * 299.99697 * 1 2 3 33 33 H 0.97000 * 119.99691 * 264.99814 * 4 2 1 34 34 H 1.09010 * 109.52031 * 297.49663 * 9 7 5 35 35 H 1.08991 * 109.52667 * 57.62850 * 9 7 5 36 36 H 1.09005 * 109.50838 * 62.27986 * 10 9 7 37 37 H 1.09001 * 109.50653 * 182.36295 * 10 9 7 38 38 H 1.09001 * 109.46151 * 179.19222 * 11 10 9 39 39 H 1.08997 * 109.46403 * 299.17517 * 11 10 9 40 40 H 1.08994 * 109.46956 * 196.14695 * 13 12 11 41 41 H 1.08996 * 109.47212 * 316.15091 * 13 12 11 42 42 H 1.09004 * 109.46965 * 185.98512 * 14 13 12 43 43 H 1.09001 * 109.46326 * 301.72708 * 17 12 11 44 44 H 1.09003 * 109.45930 * 181.76341 * 17 12 11 45 45 H 1.08999 * 113.41029 * 73.19792 * 18 2 1 46 46 H 1.09000 * 113.46830 * 105.55983 * 19 18 2 47 47 H 1.08995 * 113.46430 * 335.11643 * 19 18 2 48 48 H 0.96998 * 119.99986 * 354.99362 * 24 23 21 49 49 H 1.08999 * 113.46656 * 87.43557 * 29 20 19 50 50 H 1.09004 * 113.46420 * 217.87412 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6489 -0.7287 -3.5878 8 1 3.6486 -1.1202 -3.3996 9 6 1.7041 -1.8832 -3.9324 10 6 2.1875 -2.5618 -5.2171 11 6 2.2481 -1.5270 -6.3430 12 7 3.1650 -0.4440 -5.9653 13 6 3.3552 0.4967 -7.0775 14 6 2.1225 1.3944 -7.2025 15 9 0.9760 0.6001 -7.3104 16 9 2.0212 2.2078 -6.0686 17 6 2.6961 0.2529 -4.7609 18 6 2.0401 -0.7212 1.2492 19 6 1.5898 -0.0846 2.5714 20 7 2.9390 -0.3447 3.0960 21 6 3.4926 -0.5604 4.3297 22 1 2.8906 -0.4466 5.2191 23 6 4.8275 -0.9255 4.4372 24 7 5.3693 -1.0971 5.6243 25 14 5.8550 -1.1735 2.8969 26 1 7.2573 -1.4759 3.2807 27 1 5.3021 -2.3049 2.1099 28 1 5.8223 0.0634 2.0757 29 6 3.4329 -0.2643 1.7130 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 1.7008 -2.6069 -3.1173 35 1 0.6957 -1.4969 -4.0807 36 1 3.1801 -2.9821 -5.0554 37 1 1.4953 -3.3580 -5.4908 38 1 2.6056 -2.0039 -7.2557 39 1 1.2526 -1.1170 -6.5135 40 1 4.2347 1.1116 -6.8869 41 1 3.4947 -0.0598 -8.0043 42 1 2.2166 2.0193 -8.0906 43 1 1.6985 0.6545 -4.9388 44 1 3.3791 1.0690 -4.5245 45 1 1.9119 -1.8029 1.2075 46 1 0.8095 -0.6494 3.0816 47 1 1.3549 0.9761 2.4845 48 1 4.8578 -0.8983 6.4242 49 1 3.6838 0.7492 1.3999 50 1 4.2229 -0.9821 1.4918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970344415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = -71.861544 kcal Electronic energy + Delta-G solvation = -31920.211604 eV Core-core repulsion = 27427.163717 eV Total energy + Delta-G solvation = -4493.047887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.52124 -47.39839 -40.41932 -39.09092 -38.15540 -34.99518 -34.42616 -32.41197 -31.54306 -30.37522 -29.31508 -27.73901 -25.51643 -24.69358 -24.59379 -23.46926 -22.53045 -21.23669 -20.58720 -20.08121 -19.26589 -18.09946 -17.77031 -17.49105 -17.18148 -16.62419 -16.37731 -15.73504 -15.37532 -15.26092 -15.04214 -14.69499 -14.34314 -13.98993 -13.93148 -13.88447 -13.67703 -13.51369 -13.31783 -13.13199 -13.04364 -12.75488 -12.60551 -12.25950 -12.20554 -12.00504 -11.87207 -11.79812 -11.55108 -11.39535 -11.19110 -11.01448 -10.94546 -10.69224 -10.60064 -10.51483 -10.22333 -9.60976 -9.18598 -9.07575 -8.90775 -8.84524 -8.62565 -7.13852 -6.30818 -3.23059 2.69668 3.01268 3.34840 3.40389 3.45283 3.56513 3.66822 3.85589 4.05791 4.25549 4.39532 4.50447 4.59904 4.61100 4.70259 4.81550 4.88492 4.96676 4.99040 5.11481 5.12627 5.17789 5.26366 5.35319 5.46165 5.46413 5.49894 5.57531 5.60809 5.63256 5.72620 5.76712 5.86526 5.89761 6.00631 6.03210 6.18294 6.23252 6.27220 6.31370 6.41668 6.53844 6.60688 6.64518 6.91815 7.13095 7.58571 8.24117 8.30073 8.98162 9.50722 10.36973 11.21574 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002503 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.917507 B =11181.947746 C =11590.337811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.720 5.720 5 C 0.519 3.481 6 O -0.540 6.540 7 C -0.106 4.106 8 H 0.105 0.895 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.033 3.967 12 N -0.531 5.531 13 C 0.011 3.989 14 C 0.220 3.780 15 F -0.203 7.203 16 F -0.194 7.194 17 C 0.065 3.935 18 C -0.140 4.140 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.302 4.302 22 H 0.081 0.919 23 C -0.025 4.025 24 N -0.936 5.936 25 Si 1.076 2.924 26 H -0.296 1.296 27 H -0.293 1.293 28 H -0.290 1.290 29 C 0.105 3.895 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.260 0.740 49 H 0.043 0.957 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -0.822 -31.154 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.107 0.893 4 N -0.371 5.371 5 C 0.304 3.696 6 O -0.417 6.417 7 C -0.128 4.128 8 H 0.123 0.877 9 C -0.150 4.150 10 C -0.152 4.152 11 C -0.094 4.094 12 N -0.254 5.254 13 C -0.119 4.119 14 C 0.164 3.836 15 F -0.185 7.185 16 F -0.175 7.175 17 C -0.063 4.063 18 C -0.160 4.160 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.428 4.428 22 H 0.099 0.901 23 C -0.224 4.224 24 N -0.578 5.578 25 Si 0.910 3.090 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.218 1.218 29 C -0.020 4.020 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.387 -0.690 -31.293 31.945 hybrid contribution -2.241 0.541 0.531 2.366 sum -8.628 -0.150 -30.762 31.949 Atomic orbital electron populations 1.22105 0.95296 1.01902 1.02250 1.20999 0.93848 0.97449 0.83008 0.89298 1.46121 1.67180 1.14088 1.09674 1.20461 0.77481 0.87220 0.84420 1.90708 1.49935 1.15937 1.85082 1.21347 1.01633 0.96759 0.93064 0.87692 1.21575 0.98645 0.96399 0.98418 1.21565 1.02236 0.97289 0.94089 1.22531 0.96163 0.92382 0.98348 1.61988 1.48855 1.10984 1.03601 1.23426 0.96121 0.95213 0.97115 1.22930 0.84967 0.87587 0.88069 1.92900 1.53976 1.75138 1.96454 1.93044 1.96476 1.74052 1.53976 1.22240 1.01284 0.95010 0.87741 1.23545 0.98957 1.00304 0.93156 1.22248 0.89887 0.97181 0.89873 1.46026 1.03589 1.83992 1.02126 1.20175 0.96205 1.44835 0.81608 0.90106 1.25743 0.94380 0.98627 1.03610 1.70914 1.39330 1.50448 0.97125 0.83626 0.75438 0.76120 0.73857 1.22382 1.22152 1.21793 1.22839 0.94516 0.98309 0.86353 0.92611 0.92605 0.91349 0.76670 0.90938 0.91586 0.90793 0.90969 0.90679 0.92226 0.87284 0.87692 0.87345 0.92110 0.89489 0.88410 0.93418 0.94268 0.92953 0.93967 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.29 37.16 0.35 -1.64 16 2 C 0.15 2.18 2.47 -67.93 -0.17 2.01 16 3 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 4 N -0.72 -8.95 4.98 -53.80 -0.27 -9.22 16 5 C 0.52 6.92 7.12 -10.98 -0.08 6.84 16 6 O -0.54 -9.24 15.65 5.56 0.09 -9.16 16 7 C -0.11 -1.09 2.69 -91.69 -0.25 -1.34 16 8 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.11 -0.93 5.16 -26.61 -0.14 -1.06 16 10 C -0.11 -0.79 6.09 -26.65 -0.16 -0.95 16 11 C 0.03 0.24 5.02 -3.83 -0.02 0.22 16 12 N -0.53 -4.37 4.86 -234.67 -1.14 -5.51 16 13 C 0.01 0.06 6.00 -3.82 -0.02 0.04 16 14 C 0.22 1.47 5.14 37.16 0.19 1.66 16 15 F -0.20 -1.77 13.90 2.25 0.03 -1.74 16 16 F -0.19 -2.03 13.94 2.25 0.03 -2.00 16 17 C 0.06 0.69 2.54 -3.84 -0.01 0.68 16 18 C -0.14 -2.33 3.67 -89.97 -0.33 -2.66 16 19 C 0.14 2.63 7.33 -8.49 -0.06 2.56 16 20 N -0.63 -15.69 3.67 -184.57 -0.68 -16.37 16 21 C -0.30 -8.86 11.09 -15.06 -0.17 -9.02 16 22 H 0.08 2.49 8.05 -52.49 -0.42 2.06 16 23 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 24 N -0.94 -29.94 13.70 55.49 0.76 -29.18 16 25 Si 1.08 27.37 24.98 -169.99 -4.25 23.13 16 26 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 27 H -0.29 -6.95 6.70 56.52 0.38 -6.57 16 28 H -0.29 -7.01 6.49 56.52 0.37 -6.64 16 29 C 0.11 2.24 5.61 -8.36 -0.05 2.20 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 33 H 0.40 4.07 8.07 -40.82 -0.33 3.74 16 34 H 0.07 0.51 7.65 -51.92 -0.40 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.45 7.96 -51.93 -0.41 0.03 16 39 H 0.06 0.50 5.54 -51.93 -0.29 0.21 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.36 7.87 -51.93 -0.41 -0.05 16 42 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.77 5.66 -51.93 -0.29 0.47 16 44 H 0.09 1.05 7.79 -51.93 -0.40 0.65 16 45 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 49 H 0.04 0.91 7.93 -51.93 -0.41 0.50 16 50 H 0.05 1.03 3.85 -51.93 -0.20 0.83 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -35.86 384.13 -8.84 -44.70 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.19 Total: 0.85 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.01 Total: -1.31 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.33 Total: -60.27 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.06 Total: -3.74 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.25 Total: 23.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.86 -8.84 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970344415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.160 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds