Wall clock time and date at job start Wed Apr 1 2020 04:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47412 * 2 1 4 4 N 1.46501 * 109.47273 * 240.00273 * 2 1 3 5 5 C 1.34770 * 119.99882 * 84.99933 * 4 2 1 6 6 O 1.21282 * 120.00310 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99947 * 180.02562 * 5 4 2 8 8 H 1.08997 * 109.49822 * 299.92147 * 7 5 4 9 9 C 1.53118 * 109.50038 * 60.00295 * 7 5 4 10 10 C 1.53117 * 109.15937 * 177.59832 * 9 7 5 11 11 C 1.53043 * 109.27695 * 302.34046 * 10 9 7 12 12 N 1.46848 * 109.51929 * 59.18044 * 11 10 9 13 13 C 1.46904 * 110.99825 * 174.15835 * 12 11 10 14 14 C 1.53001 * 109.46790 * 76.14428 * 13 12 11 15 15 F 1.39898 * 109.47565 * 305.99183 * 14 13 12 16 16 F 1.39908 * 109.46839 * 65.98780 * 14 13 12 17 17 C 1.46842 * 111.19957 * 298.25792 * 12 11 10 18 18 C 1.53003 * 109.47457 * 120.00001 * 2 1 3 19 19 C 1.53500 * 114.20470 * 300.00502 * 18 2 1 20 20 N 1.47073 * 87.98192 * 220.33637 * 19 18 2 21 21 C 1.36933 * 136.05728 * 207.07672 * 20 19 18 22 22 H 1.07996 * 120.00349 * 352.86973 * 21 20 19 23 23 C 1.38815 * 119.99850 * 172.86422 * 21 20 19 24 24 N 1.31618 * 119.99963 * 178.13042 * 23 21 20 25 25 Si 1.86807 * 120.00021 * 358.12939 * 23 21 20 26 26 H 1.48496 * 109.46925 * 176.57874 * 25 23 21 27 27 H 1.48498 * 109.46857 * 296.57985 * 25 23 21 28 28 H 1.48504 * 109.46747 * 56.57832 * 25 23 21 29 29 C 1.47074 * 87.88304 * 27.34272 * 20 19 18 30 30 H 1.08996 * 109.46927 * 59.99430 * 1 2 3 31 31 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46773 * 299.99697 * 1 2 3 33 33 H 0.97000 * 119.99691 * 264.99814 * 4 2 1 34 34 H 1.09010 * 109.52031 * 297.49663 * 9 7 5 35 35 H 1.08991 * 109.52667 * 57.62850 * 9 7 5 36 36 H 1.09005 * 109.50838 * 62.27986 * 10 9 7 37 37 H 1.09001 * 109.50653 * 182.36295 * 10 9 7 38 38 H 1.09001 * 109.46151 * 179.19222 * 11 10 9 39 39 H 1.08997 * 109.46403 * 299.17517 * 11 10 9 40 40 H 1.08994 * 109.46956 * 196.14695 * 13 12 11 41 41 H 1.08996 * 109.47212 * 316.15091 * 13 12 11 42 42 H 1.09004 * 109.46965 * 185.98512 * 14 13 12 43 43 H 1.09001 * 109.46326 * 301.72708 * 17 12 11 44 44 H 1.09003 * 109.45930 * 181.76341 * 17 12 11 45 45 H 1.08999 * 113.41029 * 73.19792 * 18 2 1 46 46 H 1.09000 * 113.46830 * 105.55983 * 19 18 2 47 47 H 1.08995 * 113.46430 * 335.11643 * 19 18 2 48 48 H 0.96998 * 119.99986 * 354.99362 * 24 23 21 49 49 H 1.08999 * 113.46656 * 87.43557 * 29 20 19 50 50 H 1.09004 * 113.46420 * 217.87412 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6489 -0.7287 -3.5878 8 1 3.6486 -1.1202 -3.3996 9 6 1.7041 -1.8832 -3.9324 10 6 2.1875 -2.5618 -5.2171 11 6 2.2481 -1.5270 -6.3430 12 7 3.1650 -0.4440 -5.9653 13 6 3.3552 0.4967 -7.0775 14 6 2.1225 1.3944 -7.2025 15 9 0.9760 0.6001 -7.3104 16 9 2.0212 2.2078 -6.0686 17 6 2.6961 0.2529 -4.7609 18 6 2.0401 -0.7212 1.2492 19 6 1.5898 -0.0846 2.5714 20 7 2.9390 -0.3447 3.0960 21 6 3.4926 -0.5604 4.3297 22 1 2.8906 -0.4466 5.2191 23 6 4.8275 -0.9255 4.4372 24 7 5.3693 -1.0971 5.6243 25 14 5.8550 -1.1735 2.8969 26 1 7.2573 -1.4759 3.2807 27 1 5.3021 -2.3049 2.1099 28 1 5.8223 0.0634 2.0757 29 6 3.4329 -0.2643 1.7130 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 1.7008 -2.6069 -3.1173 35 1 0.6957 -1.4969 -4.0807 36 1 3.1801 -2.9821 -5.0554 37 1 1.4953 -3.3580 -5.4908 38 1 2.6056 -2.0039 -7.2557 39 1 1.2526 -1.1170 -6.5135 40 1 4.2347 1.1116 -6.8869 41 1 3.4947 -0.0598 -8.0043 42 1 2.2166 2.0193 -8.0906 43 1 1.6985 0.6545 -4.9388 44 1 3.3791 1.0690 -4.5245 45 1 1.9119 -1.8029 1.2075 46 1 0.8095 -0.6494 3.0816 47 1 1.3549 0.9761 2.4845 48 1 4.8578 -0.8983 6.4242 49 1 3.6838 0.7492 1.3999 50 1 4.2229 -0.9821 1.4918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970344415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:26 Heat of formation + Delta-G solvation = -98.923865 kcal Electronic energy + Delta-G solvation = -31921.385114 eV Core-core repulsion = 27427.163717 eV Total energy + Delta-G solvation = -4494.221397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.12058 -48.02713 -41.45848 -40.40441 -39.14453 -36.30186 -35.09752 -34.49054 -32.44059 -31.45063 -29.90925 -29.48482 -27.12042 -25.74113 -25.27261 -24.82225 -23.08391 -22.68929 -21.56841 -21.10687 -20.58126 -19.59406 -18.76528 -18.36830 -18.03477 -17.63856 -17.34517 -17.07325 -16.47244 -16.11919 -15.90208 -15.81066 -15.55251 -15.23046 -15.11762 -14.88799 -14.66589 -14.54724 -14.30405 -14.19975 -13.94257 -13.60285 -13.55464 -13.37538 -13.21499 -13.16796 -13.11769 -12.73830 -12.58628 -12.50904 -12.41524 -12.24920 -12.13801 -11.78849 -11.75164 -11.63828 -11.33520 -11.27025 -11.09947 -10.81260 -10.64959 -10.04230 -9.24777 -9.22089 -8.67092 -5.50641 1.35774 1.46956 1.66318 1.67410 2.10250 2.51840 2.72792 2.96808 3.06408 3.16143 3.40365 3.43581 3.58586 3.61649 3.81868 3.84896 3.86540 3.93737 4.18902 4.21826 4.24210 4.36916 4.38313 4.43705 4.53279 4.54826 4.62629 4.64091 4.65360 4.72194 4.74935 4.78575 4.83557 4.86253 4.94967 4.99397 5.02770 5.11337 5.16483 5.20654 5.27616 5.41358 5.43274 5.58261 5.90953 5.92797 6.02259 6.59803 6.67375 7.29081 7.30509 8.24624 8.88037 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002503 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.917507 B =11181.947746 C =11590.337811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.066 0.934 4 N -0.711 5.711 5 C 0.517 3.483 6 O -0.583 6.583 7 C -0.100 4.100 8 H 0.117 0.883 9 C -0.108 4.108 10 C -0.111 4.111 11 C 0.031 3.969 12 N -0.534 5.534 13 C 0.009 3.991 14 C 0.209 3.791 15 F -0.216 7.216 16 F -0.220 7.220 17 C 0.074 3.926 18 C -0.103 4.103 19 C 0.131 3.869 20 N -0.662 5.662 21 C -0.291 4.291 22 H 0.049 0.951 23 C -0.086 4.086 24 N -0.971 5.971 25 Si 1.114 2.886 26 H -0.305 1.305 27 H -0.261 1.261 28 H -0.274 1.274 29 C 0.095 3.905 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.246 0.754 49 H 0.040 0.960 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 -2.490 -34.665 35.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.084 0.916 4 N -0.362 5.362 5 C 0.304 3.696 6 O -0.462 6.462 7 C -0.122 4.122 8 H 0.135 0.865 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.096 4.096 12 N -0.257 5.257 13 C -0.120 4.120 14 C 0.154 3.846 15 F -0.198 7.198 16 F -0.202 7.202 17 C -0.054 4.054 18 C -0.122 4.122 19 C 0.005 3.995 20 N -0.391 5.391 21 C -0.418 4.418 22 H 0.067 0.933 23 C -0.277 4.277 24 N -0.617 5.617 25 Si 0.941 3.059 26 H -0.233 1.233 27 H -0.188 1.188 28 H -0.200 1.200 29 C -0.030 4.030 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.165 0.835 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.137 0.863 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.803 -2.379 -34.844 35.581 hybrid contribution -2.230 1.152 1.620 2.988 sum -9.033 -1.227 -33.223 34.451 Atomic orbital electron populations 1.22034 0.93559 1.03163 1.02072 1.20742 0.95024 0.96020 0.82725 0.91602 1.45994 1.66732 1.14703 1.08808 1.21016 0.76563 0.86742 0.85251 1.90695 1.51822 1.17970 1.85742 1.21354 1.02519 0.97026 0.91305 0.86545 1.21583 0.97322 0.95807 0.99913 1.21578 1.02866 0.97348 0.93045 1.22602 0.95434 0.92166 0.99380 1.62003 1.48632 1.11488 1.03599 1.23605 0.95770 0.95148 0.97457 1.23451 0.84715 0.88052 0.88385 1.92872 1.54844 1.75578 1.96465 1.92994 1.96591 1.74862 1.55753 1.21993 0.99382 0.94753 0.89266 1.23247 0.94993 1.01284 0.92711 1.22472 0.87881 0.98137 0.90986 1.46176 1.06598 1.84365 1.01940 1.20061 0.95937 1.42920 0.82918 0.93302 1.27093 0.96141 0.99063 1.05436 1.71014 1.39756 1.53344 0.97544 0.83188 0.73594 0.77799 0.71316 1.23324 1.18767 1.20031 1.23049 0.97123 0.98367 0.84428 0.93348 0.90590 0.91043 0.74924 0.89240 0.92848 0.90259 0.89373 0.88748 0.93526 0.86558 0.84808 0.83538 0.94541 0.91609 0.86342 0.92391 0.93330 0.94488 0.94203 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.29 71.98 0.67 -2.73 16 2 C 0.16 4.23 2.47 44.99 0.11 4.34 16 3 H 0.07 2.10 7.32 -2.38 -0.02 2.08 16 4 N -0.71 -15.82 4.98 -442.52 -2.20 -18.03 16 5 C 0.52 13.14 7.12 87.66 0.62 13.76 16 6 O -0.58 -20.00 15.65 -3.04 -0.05 -20.05 16 7 C -0.10 -1.89 2.69 -11.49 -0.03 -1.93 16 8 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 9 C -0.11 -1.51 5.16 30.67 0.16 -1.35 16 10 C -0.11 -1.18 6.09 30.65 0.19 -1.00 16 11 C 0.03 0.38 5.02 86.33 0.43 0.81 16 12 N -0.53 -7.76 4.86 -896.37 -4.35 -12.11 16 13 C 0.01 0.09 6.00 86.30 0.52 0.60 16 14 C 0.21 2.53 5.14 71.98 0.37 2.90 16 15 F -0.22 -3.56 13.90 44.97 0.63 -2.94 16 16 F -0.22 -4.68 13.94 44.97 0.63 -4.05 16 17 C 0.07 1.55 2.54 86.33 0.22 1.77 16 18 C -0.10 -3.12 3.67 -10.37 -0.04 -3.16 16 19 C 0.13 4.84 7.33 83.18 0.61 5.45 16 20 N -0.66 -32.37 3.67 -737.84 -2.71 -35.08 16 21 C -0.29 -17.29 11.09 84.03 0.93 -16.36 16 22 H 0.05 3.13 8.05 -2.91 -0.02 3.11 16 23 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 24 N -0.97 -63.91 13.70 21.65 0.30 -63.61 16 25 Si 1.11 54.58 24.98 68.60 1.71 56.30 16 26 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 27 H -0.26 -11.35 6.70 99.48 0.67 -10.68 16 28 H -0.27 -12.52 6.49 99.48 0.65 -11.88 16 29 C 0.09 3.84 5.61 83.27 0.47 4.30 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.58 7.48 -2.39 -0.02 1.56 16 33 H 0.41 6.84 8.07 -92.71 -0.75 6.09 16 34 H 0.09 0.94 7.65 -2.38 -0.02 0.92 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.79 7.96 -2.39 -0.02 0.77 16 39 H 0.05 0.71 5.54 -2.39 -0.01 0.70 16 40 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.13 0.46 7.87 -2.39 -0.02 0.44 16 42 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.04 0.94 5.66 -2.39 -0.01 0.92 16 44 H 0.07 1.62 7.79 -2.39 -0.02 1.60 16 45 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 48 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 49 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 50 H 0.05 1.90 3.85 -2.39 -0.01 1.89 16 Total: -1.00 -81.34 384.13 -0.29 -81.64 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.06 Total: 15.28 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.70 Total: 2.64 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -8.97 Total: -128.83 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 1.25 Total: -6.98 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.71 Total: 56.30 kcal Total: -81.34 -0.29 -81.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970344415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.285 kcal (2) G-P(sol) polarization free energy of solvation -81.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds